pycom06g18870

Transmembrane Fragile-X-F protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
22452714 .. 22453843
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 474 bp
ATGACTGCTTCGGGTTTTTGCACCGTGGTTCTAGGCTACTGGGCTGGTGGTCGATTGATGAAAGAAGTCGAGAAGAAGATGCCAGACTGTTTCATGAGGGGGCTTCAGGATAACACTTTTTCTGGTTATCCACCTGAGATAGTGAAGAAAATGCCCAAGAAGGATCGATCACTGAGGAGGTATGGAGACTTCAAGCAGCTCTTGGTGAACAGACAGAAATCACCAAATACAGCCAGCAGGAGTACGAAAGACTTCAAAATGAAAAAGTGTTATGTCGCGTTTGCTTCGAGGGAGAGATCAGTGTGGTCCTGCTACCATGTCGACATCGTGTCCTTTGCAGTTCCTGCTCTGACAAGTGTAAAAAGTGCCCGATATGCCGTGAATCAATCGAGAAGCGCTTACCTGTCTATGATGTTTAGGTTTAAATCCTCCCTGCATCGAATTTTGTTTACAATATGGAACTGGGGTACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Tmemb_185A zf-C3HC4_3

Protein Analysis

158

Amino Acids

18.17

Weight (kDa)

10.17

Isoelectric Point (pI)

54.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 321
AccII CGCG 1 cut(s) 278
AclWI GGATC 1 cut(s) 171
AcsI RAATTY 1 cut(s) 441
AcuI CTGAAG 1 cut(s) 89
AfaI GTAC 2 cut(s) 244, 469
AfeI AGCGCT 1 cut(s) 397
AgsI TTSAA 2 cut(s) 193, 256
AhdI GACNNNNNGTC 1 cut(s) 328
AluBI AGCT 1 cut(s) 199
AluI AGCT 1 cut(s) 199
Alw26I GTCTC 1 cut(s) 180
AlwI GGATC 1 cut(s) 171
AlwNI CAGNNNCTG 1 cut(s) 344
Aor51HI AGCGCT 1 cut(s) 397
ApeKI GCWGC 1 cut(s) 196
ApoI RAATTY 1 cut(s) 441
Asp700I GAANNNNTTC 1 cut(s) 251
AspLEI GCGC 1 cut(s) 398
AspS9I GGNCC 1 cut(s) 306
AsuHPI GGTGA 2 cut(s) 213, 217
AvaII GGWCC 1 cut(s) 306
BaeGI GKGCMC 1 cut(s) 370
BarI GAAGNNNNNNTAC 2 cut(s) 173, 205
BbvI GCAGC 1 cut(s) 208
BceAI ACGGC 1 cut(s) 362
BcoDI GTCTC 1 cut(s) 180
BfaI CTAG 1 cut(s) 32
BfoI RGCGCY 1 cut(s) 399
BisI GCNGC 1 cut(s) 197
BlsI GCNGC 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 306
BmeRI GACNNNNNGTC 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 306
BmrI ACTGGG 2 cut(s) 49, 472
BmsI GCATC 2 cut(s) 69, 445
BmuI ACTGGG 2 cut(s) 49, 472
Bsa29I ATCGAT 1 cut(s) 166
BsaJI CCNNGG 1 cut(s) 24
Bse1I ACTGG 2 cut(s) 44, 467
BseCI ATCGAT 1 cut(s) 166
BseDI CCNNGG 1 cut(s) 24
BseMII CTCAG 2 cut(s) 126, 164
BseNI ACTGG 2 cut(s) 44, 467
BseRI GAGGAG 1 cut(s) 190
BseSI GKGCMC 1 cut(s) 370
BseXI GCAGC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 278
BshVI ATCGAT 1 cut(s) 166
BsmAI GTCTC 1 cut(s) 180
Bsp1286I GDGCHC 1 cut(s) 370
Bsp143I GATC 3 cut(s) 163, 167, 296
BspCNI CTCAG 2 cut(s) 127, 165
BspDI ATCGAT 1 cut(s) 166
BspFNI CGCG 1 cut(s) 278
BspHI TCATGA 1 cut(s) 93
BspPI GGATC 1 cut(s) 171
BsrI ACTGG 2 cut(s) 44, 467
BssECI CCNNGG 1 cut(s) 24
BssMI GATC 3 cut(s) 163, 167, 296
Bst4CI ACNGT 2 cut(s) 25, 89
BstAPI GCANNNNNTGC 1 cut(s) 344
BstC8I GCNNGC 1 cut(s) 235
BstDEI CTNAG 2 cut(s) 135, 173
BstDSI CCRYGG 1 cut(s) 24
BstFNI CGCG 1 cut(s) 278
BstH2I RGCGCY 1 cut(s) 399
BstHHI GCGC 1 cut(s) 398
BstKTI GATC 3 cut(s) 166, 170, 299
BstMAI GTCTC 1 cut(s) 180
BstMBI GATC 3 cut(s) 163, 167, 296
BstMWI GCNNNNNNNGC 2 cut(s) 344, 374
BstSLI GKGCMC 1 cut(s) 370
BstUI CGCG 1 cut(s) 278
BstV1I GCAGC 1 cut(s) 208
Bsu15I ATCGAT 1 cut(s) 166
BsuTUI ATCGAT 1 cut(s) 166
BtgI CCRYGG 1 cut(s) 24
BtsIMutI CAGTG 2 cut(s) 170, 306
Cac8I GCNNGC 1 cut(s) 235
CaiI CAGNNNCTG 1 cut(s) 344
CciI TCATGA 1 cut(s) 93
CfoI GCGC 1 cut(s) 398
Cfr13I GGNCC 1 cut(s) 306
ClaI ATCGAT 1 cut(s) 166
Csp6I GTAC 2 cut(s) 243, 468
CviAII CATG 2 cut(s) 94, 317
CviJI RGCY 5 cut(s) 36, 44, 103, 199, 233
CviKI_1 RGCY 5 cut(s) 36, 44, 103, 199, 233
CviQI GTAC 2 cut(s) 243, 468
DdeI CTNAG 2 cut(s) 135, 173
DpnI GATC 3 cut(s) 165, 169, 298
DpnII GATC 3 cut(s) 163, 167, 296
DraI TTTAAA 1 cut(s) 424
DriI GACNNNNNGTC 1 cut(s) 328
Eam1105I GACNNNNNGTC 1 cut(s) 328
Eco47I GGWCC 1 cut(s) 306
Eco47III AGCGCT 1 cut(s) 397
Eco57I CTGAAG 1 cut(s) 89
FaeI CATG 2 cut(s) 97, 320
FaiI YATR 8 cut(s) 95, 183, 273, 318, 375, 410, 457, 472
FalI AAGNNNNNCTT 2 cut(s) 185, 217
FatI CATG 2 cut(s) 93, 316
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 1 cut(s) 197
Fsp4HI GCNGC 1 cut(s) 197
FspBI CTAG 1 cut(s) 32
GlaI GCGC 1 cut(s) 397
GluI GCNGC 1 cut(s) 197
HaeII RGCGCY 1 cut(s) 399
HhaI GCGC 1 cut(s) 398
Hin1II CATG 2 cut(s) 97, 320
Hin6I GCGC 1 cut(s) 396
HinP1I GCGC 1 cut(s) 396
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HinfI GANTC 1 cut(s) 382
HphI GGTGA 2 cut(s) 213, 217
Hpy166II GTNNAC 3 cut(s) 208, 322, 450
Hpy188I TCNGA 1 cut(s) 351
Hpy188III TCNNGA 4 cut(s) 70, 94, 107, 390
Hpy8I GTNNAC 3 cut(s) 208, 322, 450
HpyAV CCTTC 1 cut(s) 154
HpyCH4III ACNGT 2 cut(s) 25, 89
HpyCH4V TGCA 3 cut(s) 21, 338, 436
HpyF10VI GCNNNNNNNGC 2 cut(s) 344, 374
HpyF3I CTNAG 2 cut(s) 135, 173
Hsp92II CATG 2 cut(s) 97, 320
HspAI GCGC 1 cut(s) 396
Kzo9I GATC 3 cut(s) 163, 167, 296
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 69, 445
MaeI CTAG 1 cut(s) 32
MalI GATC 3 cut(s) 165, 169, 298
MboI GATC 3 cut(s) 163, 167, 296
MboII GAAGA 3 cut(s) 85, 88, 157
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 1 cut(s) 441
MnlI CCTC 5 cut(s) 90, 168, 171, 282, 439
MroXI GAANNNNTTC 1 cut(s) 251
MseI TTAA 1 cut(s) 423
MvnI CGCG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 344, 374
NdeII GATC 3 cut(s) 163, 167, 296
NlaIII CATG 2 cut(s) 97, 320
PagI TCATGA 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 251
PfeI GAWTC 1 cut(s) 382
PkrI GCNGC 1 cut(s) 198
PspPI GGNCC 1 cut(s) 306
PstNI CAGNNNCTG 1 cut(s) 344
RsaI GTAC 2 cut(s) 244, 469
RsaNI GTAC 2 cut(s) 243, 468
SalI GTCGAC 1 cut(s) 320
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 1 cut(s) 197
Sau3AI GATC 3 cut(s) 163, 167, 296
Sau96I GGNCC 1 cut(s) 306
SduI GDGCHC 1 cut(s) 370
SetI ASST 5 cut(s) 136, 182, 201, 405, 422
SfaNI GCATC 2 cut(s) 69, 445
SinI GGWCC 1 cut(s) 306
Sse9I AATT 1 cut(s) 441
SspMI CTAG 1 cut(s) 32
TaaI ACNGT 2 cut(s) 25, 89
TaqI TCGA 7 cut(s) 52, 69, 166, 287, 321, 389, 439
TasI AATT 1 cut(s) 441
TfiI GAWTC 1 cut(s) 382
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 2 cut(s) 177, 306
TseI GCWGC 1 cut(s) 196
TspDTI ATGAA 3 cut(s) 74, 82, 275
TspRI CASTG 2 cut(s) 177, 306
VpaK11BI GGWCC 1 cut(s) 306
XapI RAATTY 1 cut(s) 441
XmiI GTMKAC 1 cut(s) 321
XmnI GAANNNNTTC 1 cut(s) 251
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.