pycom06g19550

Wall-associated receptor kinase C-terminal

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
22939924 .. 22940474
551 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 444 bp
ATGGAGTTCCTCCAATCGATAACCCGCCGACGCTATATGCCCTCGCTGGAACCCATGTGGACCATCTTCCTCGTCGTCATCTTCATCGGCTTGATGTTCGAGTTTCTCTTTGACTGGAAATCTTTGCTCCTTGCTGAGTTTTTTGTGATGGCTCGAGGACTCGAGTACTTGCATTTTGACATAAAACCGCATACTATTCTTTTGGACGATAACTTTTGCCCCAAGATTTCTGACTTTGGGCTTTCGAAACTTTGCCTCAAGAAGGAGAGTACTGTGTTGATGTTGGATGCAAGAGGGACGATTGGCTATATTGCTCCGGAAGTGGTTTGTAGAATCTTTGGAGGAGTTTCAGTTAAGTCCGATGTCTACAGCTATGGAATGATGGTTCCGGAGATGGCTGGAGGAAAAAAAGAACGTCCACGCCTGAGCGAGCCACACGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.

Protein Analysis

148

Amino Acids

16.98

Weight (kDa)

6.31

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 55 - 138 4.9e-13 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 57 - 136 1.4e-15 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 366
AccIII TCCGGA 2 cut(s) 316, 388
AciI CCGC 2 cut(s) 25, 188
AfaI GTAC 2 cut(s) 167, 271
AfiI CCNNNNNNNGG 1 cut(s) 262
AleI CACNNNNGTG 1 cut(s) 439
AloI GAACNNNNNNTCC 2 cut(s) 369, 401
AluBI AGCT 1 cut(s) 372
AluI AGCT 1 cut(s) 372
Ama87I CYCGRG 2 cut(s) 153, 161
Aor13HI TCCGGA 2 cut(s) 316, 388
AspS9I GGNCC 1 cut(s) 60
AsuII TTCGAA 1 cut(s) 245
AvaI CYCGRG 2 cut(s) 153, 161
AvaII GGWCC 1 cut(s) 60
BauI CACGAG 1 cut(s) 437
BccI CCATC 4 cut(s) 71, 142, 376, 388
BfmI CTRYAG 1 cut(s) 367
BmcAI AGTACT 2 cut(s) 167, 271
Bme18I GGWCC 1 cut(s) 60
BmeT110I CYCGRG 2 cut(s) 153, 161
BmgT120I GGNCC 1 cut(s) 60
BmiI GGNNCC 2 cut(s) 51, 387
BmsI GCATC 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 420
Bpu10I CCTNAGC 1 cut(s) 425
Bpu14I TTCGAA 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 242
Bsa29I ATCGAT 1 cut(s) 17
BsaWI WCCGGW 2 cut(s) 316, 388
BsaXI ACNNNNNCTCC 2 cut(s) 336, 366
Bsc4I CCNNNNNNNGG 1 cut(s) 262
Bse1I ACTGG 1 cut(s) 119
BseAI TCCGGA 2 cut(s) 316, 388
BseCI ATCGAT 1 cut(s) 17
BseGI GGATG 1 cut(s) 292
BseLI CCNNNNNNNGG 1 cut(s) 262
BseMII CTCAG 2 cut(s) 126, 416
BseNI ACTGG 1 cut(s) 119
BseRI GAGGAG 1 cut(s) 357
BshVI ATCGAT 1 cut(s) 17
BsiHKCI CYCGRG 2 cut(s) 153, 161
BsiSI CCGG 2 cut(s) 317, 389
BslFI GGGAC 1 cut(s) 310
BslI CCNNNNNNNGG 1 cut(s) 262
BsmFI GGGAC 1 cut(s) 310
BsoBI CYCGRG 2 cut(s) 153, 161
Bsp119I TTCGAA 1 cut(s) 245
Bsp13I TCCGGA 2 cut(s) 316, 388
BspACI CCGC 2 cut(s) 25, 188
BspCNI CTCAG 2 cut(s) 127, 417
BspDI ATCGAT 1 cut(s) 17
BspEI TCCGGA 2 cut(s) 316, 388
BspLI GGNNCC 2 cut(s) 51, 387
BspT104I TTCGAA 1 cut(s) 245
BsrI ACTGG 1 cut(s) 119
BssSI CACGAG 1 cut(s) 437
Bst2BI CACGAG 1 cut(s) 437
Bst4CI ACNGT 1 cut(s) 274
BstBI TTCGAA 1 cut(s) 245
BstC8I GCNNGC 1 cut(s) 431
BstDEI CTNAG 2 cut(s) 135, 425
BstENI CCTNNNNNAGG 1 cut(s) 260
BstF5I GGATG 1 cut(s) 292
BstSFI CTRYAG 1 cut(s) 367
Bsu15I ATCGAT 1 cut(s) 17
BsuTUI ATCGAT 1 cut(s) 17
BtsCI GGATG 1 cut(s) 292
Cac8I GCNNGC 1 cut(s) 431
Cfr13I GGNCC 1 cut(s) 60
ClaI ATCGAT 1 cut(s) 17
CseI GACGC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 166, 270
CviAII CATG 1 cut(s) 55
CviJI RGCY 7 cut(s) 90, 152, 241, 306, 372, 398, 433
CviKI_1 RGCY 7 cut(s) 90, 152, 241, 306, 372, 398, 433
CviQI GTAC 2 cut(s) 166, 270
DdeI CTNAG 2 cut(s) 135, 425
Eco47I GGWCC 1 cut(s) 60
Eco88I CYCGRG 2 cut(s) 153, 161
EcoNI CCTNNNNNAGG 1 cut(s) 260
FaeI CATG 1 cut(s) 58
FaiI YATR 7 cut(s) 36, 38, 56, 182, 192, 309, 375
FaqI GGGAC 1 cut(s) 310
FatI CATG 1 cut(s) 54
FauI CCCGC 1 cut(s) 32
FblI GTMKAC 1 cut(s) 366
FokI GGATG 1 cut(s) 299
GsuI CTGGAG 1 cut(s) 420
HapII CCGG 2 cut(s) 317, 389
HgaI GACGC 1 cut(s) 39
Hin1II CATG 1 cut(s) 58
HinfI GANTC 2 cut(s) 159, 333
HpaII CCGG 2 cut(s) 317, 389
Hpy166II GTNNAC 3 cut(s) 60, 367, 419
Hpy188I TCNGA 2 cut(s) 232, 361
Hpy188III TCNNGA 3 cut(s) 259, 317, 389
Hpy8I GTNNAC 3 cut(s) 60, 367, 419
Hpy99I CGWCG 2 cut(s) 33, 77
HpyAV CCTTC 1 cut(s) 256
HpyCH4III ACNGT 1 cut(s) 274
HpyCH4IV ACGT 1 cut(s) 415
HpyCH4V TGCA 2 cut(s) 172, 290
HpyF3I CTNAG 2 cut(s) 135, 425
HpySE526I ACGT 1 cut(s) 415
Hsp92II CATG 1 cut(s) 58
Kpn2I TCCGGA 2 cut(s) 316, 388
LmnI GCTCC 2 cut(s) 132, 319
LpnPI CCDG 6 cut(s) 32, 100, 330, 384, 402, 437
LweI GCATC 1 cut(s) 277
MaeII ACGT 1 cut(s) 415
MboII GAAGA 2 cut(s) 58, 73
MlyI GAGTC 1 cut(s) 153
MmeI TCCRAC 1 cut(s) 264
MnlI CCTC 8 cut(s) 20, 52, 80, 149, 266, 287, 335, 395
MroI TCCGGA 2 cut(s) 316, 388
MseI TTAA 1 cut(s) 354
MslI CAYNNNNRTG 1 cut(s) 439
MspI CCGG 2 cut(s) 317, 389
NlaIII CATG 1 cut(s) 58
NlaIV GGNNCC 2 cut(s) 51, 387
NspV TTCGAA 1 cut(s) 245
OliI CACNNNNGTG 1 cut(s) 439
PaeR7I CTCGAG 2 cut(s) 153, 161
PfeI GAWTC 1 cut(s) 333
PleI GAGTC 1 cut(s) 153
PpsI GAGTC 1 cut(s) 153
PspN4I GGNNCC 2 cut(s) 51, 387
PspPI GGNCC 1 cut(s) 60
PspXI VCTCGAGB 2 cut(s) 153, 161
RsaI GTAC 2 cut(s) 167, 271
RsaNI GTAC 2 cut(s) 166, 270
RseI CAYNNNNRTG 1 cut(s) 439
SaqAI TTAA 1 cut(s) 354
Sau96I GGNCC 1 cut(s) 60
ScaI AGTACT 2 cut(s) 167, 271
SchI GAGTC 1 cut(s) 153
SetI ASST 2 cut(s) 374, 418
SfaNI GCATC 1 cut(s) 277
SfcI CTRYAG 1 cut(s) 367
Sfr274I CTCGAG 2 cut(s) 153, 161
SfuI TTCGAA 1 cut(s) 245
SinI GGWCC 1 cut(s) 60
SlaI CTCGAG 2 cut(s) 153, 161
SmiMI CAYNNNNRTG 1 cut(s) 439
SmlI CTYRAG 3 cut(s) 153, 161, 257
SmoI CTYRAG 3 cut(s) 153, 161, 257
SsiI CCGC 2 cut(s) 25, 188
TaaI ACNGT 1 cut(s) 274
TaiI ACGT 1 cut(s) 418
TaqI TCGA 5 cut(s) 17, 99, 154, 162, 245
TatI WGTACW 2 cut(s) 165, 269
TfiI GAWTC 1 cut(s) 333
Tru1I TTAA 1 cut(s) 354
Tru9I TTAA 1 cut(s) 354
TspDTI ATGAA 1 cut(s) 73
VpaK11BI GGWCC 1 cut(s) 60
XagI CCTNNNNNAGG 1 cut(s) 260
XhoI CTCGAG 2 cut(s) 153, 161
XmiI GTMKAC 1 cut(s) 366
ZrmI AGTACT 2 cut(s) 167, 271
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.