Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23096358 .. 23097090

Gene Structure 733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g19800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGGCTTCCCCGGCAGTCATCTCCCAACCGCGCTCCTCCAAGACCGAGTCTTATGTCGATAACAAGCGCAAGGAGGACATCCGCCAGGCCAACATCACCGCCGCCCGCGCCGTCGCCGATGCCGTCCGAACCAGCCTGGGACCCAAGGGCATGGACAAGATGATCTCCACCGCCAACGGCGAGGTTATCATCACCAACGACGGCGCCACGATTCTTAACAAGATGGAGGTCCTCCAACCAGCCGCCAAGATGCTTGTCGAGCTTTCCAAGTCCCAGGACGCCGCCGCCGGCGACGGCACCACTACCGTCGTCGTCATTGGCGGCGCTCTCCTGAAACAGTGCCAGGTCCTTCTGTCCCACGGCATTCACCCGACTGTGATCTCCGACTCTCTCTACAAGGCTTCCACCAAAGCGGTCGACGTCTTGACCGCCATGGCCGTCCCCGTCGAGCTCACGGACCGTGATTCGCTTGTCAAGTCTGCAAGCACGTCGCTCAACAGCAAGGTGGTGAGCCAGTACTCGACTCTGCTCGCGCCGATGGCCGTGGACGCCGTGCTCTCCGTGGTGGACCCAGCGAAGCCAGAGGTGGTGGACCTGAGGGATATCAGGATCGTGAAGAAGCTTGGAGGAACCGTGGACGATACTGAGACGGTGAAGGGACTTGTTTTCGATAAGAAGGCGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

230

Amino Acids

24.12

Weight (kDa)

7.77

Isoelectric Point (pI)

33.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	423
AccB1I	GGYRCC	2 cut(s)	203, 296
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	3 cut(s)	31, 108, 533
AclWI	GGATC	1 cut(s)	617
AcoI	YGGCCR	2 cut(s)	435, 540
AcyI	GRCGYC	4 cut(s)	204, 279, 420, 549
AfaI	GTAC	1 cut(s)	518
AjiI	CACGTC	1 cut(s)	489
AjnI	CCWGG	4 cut(s)	84, 135, 273, 342
AluBI	AGCT	3 cut(s)	262, 451, 622
AluI	AGCT	3 cut(s)	262, 451, 622
Alw21I	GWGCWC	2 cut(s)	453, 558
Alw26I	GTCTC	1 cut(s)	641
AlwI	GGATC	1 cut(s)	617
AoxI	GGCC	3 cut(s)	87, 435, 540
AspLEI	GCGC	6 cut(s)	33, 69, 110, 206, 326, 535
AspS9I	GGNCC	6 cut(s)	140, 229, 346, 457, 568, 592
AsuC2I	CCSGG	1 cut(s)	11
AsuHPI	GGTGA	5 cut(s)	88, 184, 359, 520, 664
AvaII	GGWCC	6 cut(s)	140, 229, 346, 457, 568, 592
AxyI	CCTNAGG	1 cut(s)	596
BanI	GGYRCC	2 cut(s)	203, 296
BanII	GRGCYC	1 cut(s)	453
Bbv12I	GWGCWC	2 cut(s)	453, 558
BccI	CCATC	2 cut(s)	217, 532
BceAI	ACGGC	9 cut(s)	95, 107, 193, 217, 310, 376, 422, 527, 536
BcgI	CGANNNNNNTGC	2 cut(s)	471, 505
BciT130I	CCWGG	4 cut(s)	86, 137, 275, 344
BcnI	CCSGG	1 cut(s)	11
BcoDI	GTCTC	1 cut(s)	641
BfoI	RGCGCY	2 cut(s)	207, 327
BisI	GCNGC	5 cut(s)	102, 243, 282, 285, 322
BlsI	GCNGC	5 cut(s)	103, 244, 283, 286, 323
BmcAI	AGTACT	1 cut(s)	518
Bme1390I	CCNGG	5 cut(s)	11, 86, 137, 275, 344
Bme18I	GGWCC	6 cut(s)	140, 229, 346, 457, 568, 592
BmgBI	CACGTC	1 cut(s)	489
BmgT120I	GGNCC	6 cut(s)	140, 229, 346, 457, 568, 592
BmiI	GGNNCC	6 cut(s)	141, 142, 205, 298, 570, 631
BmrFI	CCNGG	5 cut(s)	11, 86, 137, 275, 344
BmsI	GCATC	3 cut(s)	109, 240, 672
BpuMI	CCSGG	1 cut(s)	11
BsaHI	GRCGYC	4 cut(s)	204, 279, 420, 549
BsaJI	CCNNGG	9 cut(s)	9, 136, 144, 273, 358, 432, 543, 561, 633
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bse118I	RCCGGY	1 cut(s)	287
Bse1I	ACTGG	1 cut(s)	514
Bse21I	CCTNAGG	1 cut(s)	596
BseBI	CCWGG	4 cut(s)	86, 137, 275, 344
BseDI	CCNNGG	9 cut(s)	9, 136, 144, 273, 358, 432, 543, 561, 633
BseGI	GGATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	587, 636
BseNI	ACTGG	1 cut(s)	514
BseRI	GAGGAG	1 cut(s)	25
BseYI	CCCAGC	1 cut(s)	571
Bsh1236I	CGCG	3 cut(s)	31, 108, 533
Bsh1285I	CGRYCG	1 cut(s)	417
BshFI	GGCC	3 cut(s)	89, 437, 542
BshNI	GGYRCC	2 cut(s)	203, 296
BsiEI	CGRYCG	1 cut(s)	417
BsiHKAI	GWGCWC	2 cut(s)	453, 558
BsiSI	CCGG	2 cut(s)	11, 288
BslFI	GGGAC	5 cut(s)	153, 256, 340, 425, 672
BsmAI	GTCTC	1 cut(s)	641
BsmBI	CGTCTC	1 cut(s)	641
BsmFI	GGGAC	5 cut(s)	153, 256, 340, 425, 672
BsmI	GAATGC	1 cut(s)	363
BsnI	GGCC	3 cut(s)	89, 437, 542
Bsp1286I	GDGCHC	2 cut(s)	453, 558
Bsp143I	GATC	3 cut(s)	162, 378, 609
Bsp19I	CCATGG	1 cut(s)	432
BspANI	GGCC	3 cut(s)	89, 437, 542
BspCNI	CTCAG	2 cut(s)	588, 637
BspFNI	CGCG	3 cut(s)	31, 108, 533
BspLI	GGNNCC	6 cut(s)	141, 142, 205, 298, 570, 631
BspPI	GGATC	1 cut(s)	617
BspT107I	GGYRCC	2 cut(s)	203, 296
BsrFI	RCCGGY	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	287
BssECI	CCNNGG	9 cut(s)	9, 136, 144, 273, 358, 432, 543, 561, 633
BssMI	GATC	3 cut(s)	162, 378, 609
BssNI	GRCGYC	4 cut(s)	204, 279, 420, 549
BssT1I	CCWWGG	2 cut(s)	144, 432
Bst2UI	CCWGG	4 cut(s)	86, 137, 275, 344
Bst4CI	ACNGT	6 cut(s)	307, 339, 376, 461, 634, 652
BstACI	GRCGYC	4 cut(s)	204, 279, 420, 549
BstC8I	GCNNGC	4 cut(s)	106, 289, 484, 531
BstDEI	CTNAG	2 cut(s)	596, 645
BstDSI	CCRYGG	5 cut(s)	358, 432, 543, 561, 633
BstF5I	GGATG	1 cut(s)	78
BstFNI	CGCG	3 cut(s)	31, 108, 533
BstH2I	RGCGCY	2 cut(s)	207, 327
BstHHI	GCGC	6 cut(s)	33, 69, 110, 206, 326, 535
BstKTI	GATC	3 cut(s)	165, 381, 612
BstMAI	GTCTC	1 cut(s)	641
BstMBI	GATC	3 cut(s)	162, 378, 609
BstMCI	CGRYCG	1 cut(s)	417
BstMWI	GCNNNNNNNGC	5 cut(s)	11, 107, 259, 539, 548
BstNI	CCWGG	4 cut(s)	86, 137, 275, 344
BstSCI	CCNGG	5 cut(s)	9, 84, 135, 273, 342
BstUI	CGCG	3 cut(s)	31, 108, 533
BstXI	CCANNNNNNTGG	1 cut(s)	151
Bsu36I	CCTNAGG	1 cut(s)	596
BsuRI	GGCC	3 cut(s)	89, 437, 542
BtgI	CCRYGG	5 cut(s)	358, 432, 543, 561, 633
BtrI	CACGTC	1 cut(s)	489
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	344
Cac8I	GCNNGC	4 cut(s)	106, 289, 484, 531
CfoI	GCGC	6 cut(s)	33, 69, 110, 206, 326, 535
Cfr10I	RCCGGY	1 cut(s)	287
Cfr13I	GGNCC	6 cut(s)	140, 229, 346, 457, 568, 592
CpoI	CGGWCCG	1 cut(s)	457
CseI	GACGC	2 cut(s)	287, 557
Csp6I	GTAC	1 cut(s)	517
CspI	CGGWCCG	1 cut(s)	457
CviAII	CATG	2 cut(s)	151, 433
CviQI	GTAC	1 cut(s)	517
DdeI	CTNAG	2 cut(s)	596, 645
DinI	GGCGCC	1 cut(s)	205
DpnI	GATC	3 cut(s)	164, 380, 611
DpnII	GATC	3 cut(s)	162, 378, 609
EaeI	YGGCCR	2 cut(s)	435, 540
EciI	GGCGGA	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	451
Eco130I	CCWWGG	2 cut(s)	144, 432
Eco24I	GRGCYC	1 cut(s)	453
Eco32I	GATATC	1 cut(s)	604
Eco47I	GGWCC	6 cut(s)	140, 229, 346, 457, 568, 592
Eco53kI	GAGCTC	1 cut(s)	451
Eco81I	CCTNAGG	1 cut(s)	596
EcoICRI	GAGCTC	1 cut(s)	451
EcoO109I	RGGNCCY	3 cut(s)	140, 229, 346
EcoRII	CCWGG	4 cut(s)	84, 135, 273, 342
EcoRV	GATATC	1 cut(s)	604
EcoT14I	CCWWGG	2 cut(s)	144, 432
EcoT38I	GRGCYC	1 cut(s)	453
EgeI	GGCGCC	1 cut(s)	205
EheI	GGCGCC	1 cut(s)	205
ErhI	CCWWGG	2 cut(s)	144, 432
Esp3I	CGTCTC	1 cut(s)	641
FaeI	CATG	2 cut(s)	154, 436
FaiI	YATR	3 cut(s)	54, 152, 434
FaqI	GGGAC	5 cut(s)	153, 256, 340, 425, 672
FatI	CATG	2 cut(s)	150, 432
FauI	CCCGC	1 cut(s)	113
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	5 cut(s)	102, 243, 282, 285, 322
FokI	GGATG	1 cut(s)	65
FriOI	GRGCYC	1 cut(s)	453
Fsp4HI	GCNGC	5 cut(s)	102, 243, 282, 285, 322
GlaI	GCGC	6 cut(s)	32, 68, 109, 205, 325, 534
GluI	GCNGC	5 cut(s)	102, 243, 282, 285, 322
GsaI	CCCAGC	1 cut(s)	575
HaeII	RGCGCY	2 cut(s)	207, 327
HaeIII	GGCC	3 cut(s)	89, 437, 542
HapII	CCGG	2 cut(s)	11, 288
HgaI	GACGC	2 cut(s)	287, 557
HhaI	GCGC	6 cut(s)	33, 69, 110, 206, 326, 535
Hin1I	GRCGYC	4 cut(s)	204, 279, 420, 549
Hin1II	CATG	2 cut(s)	154, 436
Hin6I	GCGC	6 cut(s)	31, 67, 108, 204, 324, 533
HinP1I	GCGC	6 cut(s)	31, 67, 108, 204, 324, 533
HincII	GTYRAC	1 cut(s)	418
HindII	GTYRAC	1 cut(s)	418
HindIII	AAGCTT	1 cut(s)	620
HinfI	GANTC	5 cut(s)	47, 211, 386, 464, 523
HpaII	CCGG	2 cut(s)	11, 288
HphI	GGTGA	5 cut(s)	88, 184, 359, 520, 664
Hpy166II	GTNNAC	5 cut(s)	418, 547, 568, 592, 637
Hpy188I	TCNGA	2 cut(s)	128, 385
Hpy188III	TCNNGA	4 cut(s)	331, 424, 607, 613
Hpy8I	GTNNAC	5 cut(s)	418, 547, 568, 592, 637
Hpy99I	CGWCG	8 cut(s)	116, 203, 296, 311, 314, 422, 449, 493
HpyAV	CCTTC	3 cut(s)	359, 649, 670
HpyCH4III	ACNGT	6 cut(s)	307, 339, 376, 461, 634, 652
HpyCH4IV	ACGT	2 cut(s)	420, 488
HpyCH4V	TGCA	1 cut(s)	482
HpyF10VI	GCNNNNNNNGC	5 cut(s)	11, 107, 259, 539, 548
HpyF3I	CTNAG	2 cut(s)	596, 645
HpySE526I	ACGT	2 cut(s)	420, 488
Hsp92I	GRCGYC	4 cut(s)	204, 279, 420, 549
Hsp92II	CATG	2 cut(s)	154, 436
HspAI	GCGC	6 cut(s)	31, 67, 108, 204, 324, 533
KasI	GGCGCC	1 cut(s)	203
KflI	GGGWCCC	1 cut(s)	140
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	162, 378, 609
LmnI	GCTCC	1 cut(s)	38
LweI	GCATC	3 cut(s)	109, 240, 672
MaeII	ACGT	2 cut(s)	420, 488
MalI	GATC	3 cut(s)	164, 380, 611
MboI	GATC	3 cut(s)	162, 378, 609
MboII	GAAGA	1 cut(s)	628
MhlI	GDGCHC	2 cut(s)	453, 558
Mly113I	GGCGCC	1 cut(s)	204
MlyI	GAGTC	3 cut(s)	56, 380, 517
MmeI	TCCRAC	2 cut(s)	259, 408
MnlI	CCTC	8 cut(s)	46, 67, 175, 220, 242, 577, 591, 620
MreI	CGCCGGCG	1 cut(s)	287
MroNI	GCCGGC	1 cut(s)	287
MseI	TTAA	1 cut(s)	216
MspI	CCGG	2 cut(s)	11, 288
MspR9I	CCNGG	5 cut(s)	11, 86, 137, 275, 344
Mva1269I	GAATGC	1 cut(s)	363
MvaI	CCWGG	4 cut(s)	86, 137, 275, 344
MvnI	CGCG	3 cut(s)	31, 108, 533
MwoI	GCNNNNNNNGC	5 cut(s)	11, 107, 259, 539, 548
NaeI	GCCGGC	1 cut(s)	289
NarI	GGCGCC	1 cut(s)	204
NciI	CCSGG	1 cut(s)	11
NcoI	CCATGG	1 cut(s)	432
NdeII	GATC	3 cut(s)	162, 378, 609
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	154, 436
NlaIV	GGNNCC	6 cut(s)	141, 142, 205, 298, 570, 631
PcsI	WCGNNNNNNNCGW	1 cut(s)	120
PctI	GAATGC	1 cut(s)	363
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	2 cut(s)	211, 464
PflFI	GACNNNGTC	1 cut(s)	46
PkrI	GCNGC	5 cut(s)	103, 244, 283, 286, 323
PleI	GAGTC	3 cut(s)	55, 380, 517
PluTI	GGCGCC	1 cut(s)	207
PpsI	GAGTC	3 cut(s)	55, 380, 517
PpuMI	RGGWCCY	3 cut(s)	140, 229, 346
Psp124BI	GAGCTC	1 cut(s)	453
Psp5II	RGGWCCY	3 cut(s)	140, 229, 346
Psp6I	CCWGG	4 cut(s)	84, 135, 273, 342
PspFI	CCCAGC	1 cut(s)	571
PspGI	CCWGG	4 cut(s)	84, 135, 273, 342
PspN4I	GGNNCC	6 cut(s)	141, 142, 205, 298, 570, 631
PspPI	GGNCC	6 cut(s)	140, 229, 346, 457, 568, 592
PspPPI	RGGWCCY	3 cut(s)	140, 229, 346
PsyI	GACNNNGTC	1 cut(s)	46
RsaI	GTAC	1 cut(s)	518
RsaNI	GTAC	1 cut(s)	517
Rsr2I	CGGWCCG	1 cut(s)	457
RsrII	CGGWCCG	1 cut(s)	457
SacI	GAGCTC	1 cut(s)	453
SalI	GTCGAC	1 cut(s)	416
SaqAI	TTAA	1 cut(s)	216
SatI	GCNGC	5 cut(s)	102, 243, 282, 285, 322
Sau3AI	GATC	3 cut(s)	162, 378, 609
Sau96I	GGNCC	6 cut(s)	140, 229, 346, 457, 568, 592
ScaI	AGTACT	1 cut(s)	518
SchI	GAGTC	3 cut(s)	56, 380, 517
ScrFI	CCNGG	5 cut(s)	11, 86, 137, 275, 344
SduI	GDGCHC	2 cut(s)	453, 558
SfaNI	GCATC	3 cut(s)	109, 240, 672
SfoI	GGCGCC	1 cut(s)	205
SgrAI	CRCCGGYG	1 cut(s)	287
SinI	GGWCC	6 cut(s)	140, 229, 346, 457, 568, 592
SspDI	GGCGCC	1 cut(s)	203
SstI	GAGCTC	1 cut(s)	453
StyD4I	CCNGG	5 cut(s)	9, 84, 135, 273, 342
StyI	CCWWGG	2 cut(s)	144, 432
TaaI	ACNGT	6 cut(s)	307, 339, 376, 461, 634, 652
TaiI	ACGT	2 cut(s)	423, 491
TaqI	TCGA	6 cut(s)	57, 258, 417, 447, 521, 669
TaqII	GACCGA	1 cut(s)	59
TatI	WGTACW	1 cut(s)	516
TauI	GCSGC	5 cut(s)	104, 245, 284, 287, 324
TfiI	GAWTC	2 cut(s)	211, 464
Tru1I	TTAA	1 cut(s)	216
Tru9I	TTAA	1 cut(s)	216
TscAI	CASTG	1 cut(s)	344
TspGWI	ACGGA	2 cut(s)	470, 550
TspRI	CASTG	1 cut(s)	344
Tth111I	GACNNNGTC	1 cut(s)	46
VpaK11BI	GGWCC	6 cut(s)	140, 229, 346, 457, 568, 592
XmiI	GTMKAC	1 cut(s)	417
ZraI	GACGTC	1 cut(s)	421
ZrmI	AGTACT	1 cut(s)	518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.