pycom06g21000

Protein kinase domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
23824637 .. 23825565
929 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 465 bp
ATGTCACCGAATATCTTGGATCGAGCTGCATTCAGCAAAGCTATTCAAGCTCATGATCTACATACAGGCATGGATGTATGTGTGAAAATTATAAAGAACAACAAAGACTTCTTTGATCAGAGCCTTGATGAGATAAAGCTTCTCAAATACGTCAATAAGGATGATCCTGGTGACAAGTACCACATTCTTCGTTTGTACGATTACTTCTACTATCGAGAACATTTGTTAATAGTATGTGAACTTCTCAAAGCAAACTTGTATGAATTTCATAAGTTTAATCGGGAGTCAGGAGGGGAGGTCTACTTCACAATGCCACGACTGCAGTCAATTACAATTCAGTGTCTAGAAGCGCTTCAGTTTTTACATGGCCTTGGCATGATACATTGTGACTTGAAACCTGAGAATATACTGGTAAAAAGCTACAGTAGATGTGAGGTCAAAGTCATTGATCGATCTTGGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase

Protein Analysis

155

Amino Acids

18.18

Weight (kDa)

6.37

Isoelectric Point (pI)

49.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 10 - 150 3.3e-20 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 16 - 149 1.4e-10 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 92
AccI GTMKAC 1 cut(s) 300
AclWI GGATC 2 cut(s) 27, 158
AcsI RAATTY 1 cut(s) 263
AcuI CTGAAG 1 cut(s) 338
AfaI GTAC 2 cut(s) 179, 197
AfeI AGCGCT 1 cut(s) 351
AgsI TTSAA 2 cut(s) 47, 394
AjnI CCWGG 1 cut(s) 166
AluBI AGCT 5 cut(s) 26, 41, 50, 139, 420
AluI AGCT 5 cut(s) 26, 41, 50, 139, 420
AlwI GGATC 2 cut(s) 27, 158
Aor51HI AGCGCT 1 cut(s) 351
AoxI GGCC 1 cut(s) 367
ApeKI GCWGC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 263
Asp700I GAANNNNTTC 1 cut(s) 351
AspLEI GCGC 1 cut(s) 352
AsuHPI GGTGA 1 cut(s) 182
BarI GAAGNNNNNNTAC 4 cut(s) 188, 220, 225, 257
BbvI GCAGC 1 cut(s) 13
BciT130I CCWGG 1 cut(s) 168
BclI TGATCA 1 cut(s) 115
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 2 cut(s) 320, 421
BfoI RGCGCY 1 cut(s) 353
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 1 cut(s) 168
BmrFI CCNGG 1 cut(s) 168
BoxI GACNNNNGTC 1 cut(s) 322
Bsa29I ATCGAT 1 cut(s) 451
BsaJI CCNNGG 1 cut(s) 370
BsaXI ACNNNNNCTCC 2 cut(s) 282, 312
Bse1I ACTGG 1 cut(s) 414
BseBI CCWGG 1 cut(s) 168
BseCI ATCGAT 1 cut(s) 451
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 2 cut(s) 79, 166
BseMII CTCAG 1 cut(s) 390
BseNI ACTGG 1 cut(s) 414
BseXI GCAGC 1 cut(s) 13
BshFI GGCC 1 cut(s) 369
BshVI ATCGAT 1 cut(s) 451
BsmI GAATGC 1 cut(s) 29
BsnI GGCC 1 cut(s) 369
Bsp143I GATC 6 cut(s) 19, 55, 115, 163, 448, 452
BspANI GGCC 1 cut(s) 369
BspCNI CTCAG 1 cut(s) 391
BspDI ATCGAT 1 cut(s) 451
BspHI TCATGA 1 cut(s) 52
BspMAI CTGCAG 1 cut(s) 324
BspPI GGATC 2 cut(s) 27, 158
BsrI ACTGG 1 cut(s) 414
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 6 cut(s) 19, 55, 115, 163, 448, 452
BssT1I CCWWGG 1 cut(s) 370
Bst2UI CCWGG 1 cut(s) 168
Bst4CI ACNGT 1 cut(s) 425
BstDEI CTNAG 1 cut(s) 399
BstF5I GGATG 2 cut(s) 79, 166
BstH2I RGCGCY 1 cut(s) 353
BstHHI GCGC 1 cut(s) 352
BstKTI GATC 6 cut(s) 22, 58, 118, 166, 451, 455
BstMBI GATC 6 cut(s) 19, 55, 115, 163, 448, 452
BstMWI GCNNNNNNNGC 2 cut(s) 47, 319
BstNI CCWGG 1 cut(s) 168
BstPAI GACNNNNGTC 1 cut(s) 322
BstSCI CCNGG 1 cut(s) 166
BstSFI CTRYAG 2 cut(s) 320, 421
BstV1I GCAGC 1 cut(s) 13
Bsu15I ATCGAT 1 cut(s) 451
BsuRI GGCC 1 cut(s) 369
BsuTUI ATCGAT 1 cut(s) 451
BtsCI GGATG 2 cut(s) 79, 166
BtsIMutI CAGTG 1 cut(s) 344
CciI TCATGA 1 cut(s) 52
CfoI GCGC 1 cut(s) 352
ClaI ATCGAT 1 cut(s) 451
Csp6I GTAC 2 cut(s) 178, 196
CviAII CATG 4 cut(s) 53, 70, 365, 376
CviJI RGCY 7 cut(s) 26, 41, 50, 123, 139, 369, 420
CviKI_1 RGCY 7 cut(s) 26, 41, 50, 123, 139, 369, 420
CviQI GTAC 2 cut(s) 178, 196
DdeI CTNAG 1 cut(s) 399
DpnI GATC 6 cut(s) 21, 57, 117, 165, 450, 454
DpnII GATC 6 cut(s) 19, 55, 115, 163, 448, 452
Eco130I CCWWGG 1 cut(s) 370
Eco47III AGCGCT 1 cut(s) 351
Eco57I CTGAAG 1 cut(s) 338
EcoRII CCWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 370
ErhI CCWWGG 1 cut(s) 370
FaeI CATG 4 cut(s) 56, 73, 368, 379
FatI CATG 4 cut(s) 52, 69, 364, 375
FbaI TGATCA 1 cut(s) 115
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 27
FokI GGATG 2 cut(s) 86, 173
Fsp4HI GCNGC 1 cut(s) 27
FspBI CTAG 1 cut(s) 344
GlaI GCGC 1 cut(s) 351
GluI GCNGC 1 cut(s) 27
HaeII RGCGCY 1 cut(s) 353
HaeIII GGCC 1 cut(s) 369
HhaI GCGC 1 cut(s) 352
Hin1II CATG 4 cut(s) 56, 73, 368, 379
Hin6I GCGC 1 cut(s) 350
HinP1I GCGC 1 cut(s) 350
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 1 cut(s) 284
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 2 cut(s) 239, 301
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 5 cut(s) 53, 215, 281, 288, 344
Hpy8I GTNNAC 2 cut(s) 239, 301
HpyCH4III ACNGT 1 cut(s) 425
HpyCH4IV ACGT 1 cut(s) 150
HpyCH4V TGCA 2 cut(s) 29, 322
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 319
HpyF3I CTNAG 1 cut(s) 399
HpySE526I ACGT 1 cut(s) 150
Hsp92II CATG 4 cut(s) 56, 73, 368, 379
HspAI GCGC 1 cut(s) 350
Ksp22I TGATCA 1 cut(s) 115
Kzo9I GATC 6 cut(s) 19, 55, 115, 163, 448, 452
LpnPI CCDG 6 cut(s) 51, 153, 180, 273, 395, 411
Lsp1109I GCAGC 1 cut(s) 13
MaeI CTAG 1 cut(s) 344
MaeII ACGT 1 cut(s) 150
MaeIII GTNAC 3 cut(s) 3, 170, 386
MalI GATC 6 cut(s) 21, 57, 117, 165, 450, 454
MboI GATC 6 cut(s) 19, 55, 115, 163, 448, 452
MboII GAAGA 1 cut(s) 179
MluCI AATT 4 cut(s) 87, 263, 327, 333
MlyI GAGTC 1 cut(s) 293
MnlI CCTC 3 cut(s) 284, 289, 427
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 2 cut(s) 227, 276
MspR9I CCNGG 1 cut(s) 168
Mva1269I GAATGC 1 cut(s) 29
MvaI CCWGG 1 cut(s) 168
MwoI GCNNNNNNNGC 2 cut(s) 47, 319
NdeII GATC 6 cut(s) 19, 55, 115, 163, 448, 452
NlaIII CATG 4 cut(s) 56, 73, 368, 379
NmuCI GTSAC 3 cut(s) 3, 170, 386
PagI TCATGA 1 cut(s) 52
PctI GAATGC 1 cut(s) 29
PdmI GAANNNNTTC 1 cut(s) 351
PkrI GCNGC 1 cut(s) 28
PleI GAGTC 1 cut(s) 292
PpsI GAGTC 1 cut(s) 292
PshAI GACNNNNGTC 1 cut(s) 322
PsiI TTATAA 1 cut(s) 92
Psp6I CCWGG 1 cut(s) 166
PspGI CCWGG 1 cut(s) 166
PstI CTGCAG 1 cut(s) 324
RsaI GTAC 2 cut(s) 179, 197
RsaNI GTAC 2 cut(s) 178, 196
SaqAI TTAA 2 cut(s) 227, 276
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 6 cut(s) 19, 55, 115, 163, 448, 452
SchI GAGTC 1 cut(s) 293
ScrFI CCNGG 1 cut(s) 168
SetI ASST 9 cut(s) 28, 43, 52, 141, 153, 300, 400, 422, 438
SfcI CTRYAG 2 cut(s) 320, 421
Sse9I AATT 4 cut(s) 87, 263, 327, 333
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 166
StyI CCWWGG 1 cut(s) 370
TaaI ACNGT 1 cut(s) 425
TaiI ACGT 1 cut(s) 153
TaqI TCGA 3 cut(s) 22, 214, 451
TasI AATT 4 cut(s) 87, 263, 327, 333
Tru1I TTAA 2 cut(s) 227, 276
Tru9I TTAA 2 cut(s) 227, 276
TscAI CASTG 1 cut(s) 344
TseFI GTSAC 3 cut(s) 3, 170, 386
TseI GCWGC 1 cut(s) 26
Tsp45I GTSAC 3 cut(s) 3, 170, 386
TspDTI ATGAA 2 cut(s) 257, 276
TspRI CASTG 1 cut(s) 344
XapI RAATTY 1 cut(s) 263
XbaI TCTAGA 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.