Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

23861945 .. 23862957

Gene Structure 1013 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGTTGGTTAGTCGCAGCTTCCTCTTCCCTCCGATTTACAAACTCACCTTCTACACCCAAGCCCAACACCCACACACTCGCTTTCTCTTTCAGTCTCATCGGATTCACACTATGGCTGCGGAGGCCACCACCACATCCAATACGACGGCGAAGGTGGCGGGGATGGACTTCCCGACGAAAAAGGCCTACACTCCTCCTTGGGCGTCGCACATCAACCCCATCCCTTCTCACACCTTCCCTCTCGGACACGTAAAAACCCAATTCTCTTCTTCCTCTGCTCATGCTTACGTGATCGATCTTACGGGAATGCAGCTGAGCGGTAACAAAGTCAGAAAATTGGAGTTCTTGATGGCAGATGCGGTGGAGAAGGGTGCGGACTGTGTCGTGACGATAGGGAGCATCCAAAGCAACCACTGTCGTGCAACTGCAGTGGCTGCCAAGTATCTCAATCTTGACTGCTATCTCATTCTACGTATCTCAATCTTGCAGTTGGTTCCACAACTTGTTTTTATAATGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000096 GO:0000098 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006520 GO:0006534 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009063 GO:0009069 GO:0009071 GO:0009093 GO:0009507 GO:0009536 GO:0009692 GO:0009693 GO:0009987 GO:0010035 GO:0010038 GO:0010817 GO:0016054 GO:0016829 GO:0016846 GO:0019148 GO:0019447 GO:0019478 GO:0019752 GO:0042221 GO:0042445 GO:0042446 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043449 GO:0043450 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044273 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046416 GO:0046438 GO:0046686 GO:0046872 GO:0046914 GO:0050896 GO:0050897 GO:0065007 GO:0065008 GO:0071704 GO:1900673 GO:1900674 GO:1901564 GO:1901565 GO:1901575 GO:1901576 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

PALP

Protein Analysis

174

Amino Acids

19.27

Weight (kDa)

9.6

Isoelectric Point (pI)

32.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PALP	PF00291	105 - 157	5.6e-07	Pyridoxal-phosphate dependent enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	512
AccBSI	CCGCTC	1 cut(s)	318
AciI	CCGC	5 cut(s)	119, 158, 318, 359, 374
AcyI	GRCGYC	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	247
AleI	CACNNNNGTG	1 cut(s)	417
AluBI	AGCT	2 cut(s)	18, 313
AluI	AGCT	2 cut(s)	18, 313
Alw26I	GTCTC	1 cut(s)	99
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	123, 183
ApeKI	GCWGC	4 cut(s)	15, 116, 310, 434
AsuHPI	GGTGA	1 cut(s)	37
BbvI	GCAGC	4 cut(s)	27, 103, 322, 421
BccI	CCATC	3 cut(s)	157, 227, 343
BceAI	ACGGC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	99
BfmI	CTRYAG	1 cut(s)	426
BisI	GCNGC	4 cut(s)	16, 117, 311, 435
BlpI	GCTNAGC	1 cut(s)	314
BlsI	GCNGC	4 cut(s)	17, 118, 312, 436
BmiI	GGNNCC	1 cut(s)	495
BmsI	GCATC	2 cut(s)	346, 408
Bpu1102I	GCTNAGC	1 cut(s)	314
Bsa29I	ATCGAT	1 cut(s)	294
BsaAI	YACGTR	3 cut(s)	250, 289, 473
BsaHI	GRCGYC	1 cut(s)	203
BsaJI	CCNNGG	1 cut(s)	197
BseCI	ATCGAT	1 cut(s)	294
BseDI	CCNNGG	1 cut(s)	197
BseGI	GGATG	4 cut(s)	134, 168, 219, 399
BseMII	CTCAG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	183
BseXI	GCAGC	4 cut(s)	27, 103, 322, 421
BshFI	GGCC	2 cut(s)	125, 185
BshVI	ATCGAT	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	99
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	2 cut(s)	125, 185
Bsp143I	GATC	2 cut(s)	291, 295
Bsp1720I	GCTNAGC	1 cut(s)	314
BspACI	CCGC	5 cut(s)	119, 158, 318, 359, 374
BspANI	GGCC	2 cut(s)	125, 185
BspCNI	CTCAG	1 cut(s)	306
BspDI	ATCGAT	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	495
BspMAI	CTGCAG	1 cut(s)	430
BsrBI	CCGCTC	1 cut(s)	318
BssECI	CCNNGG	1 cut(s)	197
BssMI	GATC	2 cut(s)	291, 295
BssNI	GRCGYC	1 cut(s)	203
BssT1I	CCWWGG	1 cut(s)	197
Bst4CI	ACNGT	2 cut(s)	380, 416
Bst6I	CTCTTC	2 cut(s)	29, 271
BstACI	GRCGYC	1 cut(s)	203
BstAPI	GCANNNNNTGC	1 cut(s)	434
BstBAI	YACGTR	3 cut(s)	250, 289, 473
BstDEI	CTNAG	1 cut(s)	314
BstF5I	GGATG	4 cut(s)	134, 168, 219, 399
BstKTI	GATC	2 cut(s)	294, 298
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	2 cut(s)	291, 295
BstMWI	GCNNNNNNNGC	4 cut(s)	122, 155, 405, 434
BstSFI	CTRYAG	1 cut(s)	426
BstSNI	TACGTA	1 cut(s)	473
BstV1I	GCAGC	4 cut(s)	27, 103, 322, 421
Bsu15I	ATCGAT	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	125, 185
BsuTUI	ATCGAT	1 cut(s)	294
BtsCI	GGATG	4 cut(s)	134, 168, 219, 399
BtsI	GCAGTG	1 cut(s)	435
BtsIMutI	CAGTG	2 cut(s)	412, 435
CaiI	CAGNNNCTG	1 cut(s)	434
ClaI	ATCGAT	1 cut(s)	294
CseI	GACGC	1 cut(s)	192
CspCI	CAANNNNNGTGG	2 cut(s)	411, 446
CviAII	CATG	1 cut(s)	281
CviJI	RGCY	7 cut(s)	18, 62, 116, 125, 185, 313, 434
CviKI_1	RGCY	7 cut(s)	18, 62, 116, 125, 185, 313, 434
DdeI	CTNAG	1 cut(s)	314
DpnI	GATC	2 cut(s)	293, 297
DpnII	GATC	2 cut(s)	291, 295
Eam1104I	CTCTTC	2 cut(s)	29, 271
EarI	CTCTTC	2 cut(s)	29, 271
Eco105I	TACGTA	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	197
Eco147I	AGGCCT	1 cut(s)	185
EcoT14I	CCWWGG	1 cut(s)	197
ErhI	CCWWGG	1 cut(s)	197
FaeI	CATG	1 cut(s)	284
FaiI	YATR	3 cut(s)	113, 282, 512
FatI	CATG	1 cut(s)	280
FauI	CCCGC	1 cut(s)	151
Fnu4HI	GCNGC	4 cut(s)	16, 117, 311, 435
FokI	GGATG	4 cut(s)	121, 175, 206, 386
Fsp4HI	GCNGC	4 cut(s)	16, 117, 311, 435
GluI	GCNGC	4 cut(s)	16, 117, 311, 435
HaeIII	GGCC	2 cut(s)	125, 185
HgaI	GACGC	1 cut(s)	192
Hin1I	GRCGYC	1 cut(s)	203
Hin1II	CATG	1 cut(s)	284
HinfI	GANTC	1 cut(s)	103
HphI	GGTGA	1 cut(s)	37
Hpy188I	TCNGA	4 cut(s)	33, 102, 245, 332
Hpy188III	TCNNGA	4 cut(s)	172, 346, 385, 452
Hpy99I	CGWCG	3 cut(s)	148, 178, 208
HpyAV	CCTTC	5 cut(s)	58, 145, 234, 244, 361
HpyCH4III	ACNGT	2 cut(s)	380, 416
HpyCH4IV	ACGT	3 cut(s)	249, 288, 472
HpyCH4V	TGCA	4 cut(s)	310, 422, 428, 487
HpyF10VI	GCNNNNNNNGC	4 cut(s)	122, 155, 405, 434
HpyF3I	CTNAG	1 cut(s)	314
HpySE526I	ACGT	3 cut(s)	249, 288, 472
Hsp92I	GRCGYC	1 cut(s)	203
Hsp92II	CATG	1 cut(s)	284
Kzo9I	GATC	2 cut(s)	291, 295
LmnI	GCTCC	1 cut(s)	396
Lsp1109I	GCAGC	4 cut(s)	27, 103, 322, 421
LweI	GCATC	2 cut(s)	346, 408
MaeII	ACGT	3 cut(s)	249, 288, 472
MaeIII	GTNAC	2 cut(s)	320, 385
MalI	GATC	2 cut(s)	293, 297
MbiI	CCGCTC	1 cut(s)	318
MboI	GATC	2 cut(s)	291, 295
MboII	GAAGA	3 cut(s)	16, 258, 261
MluCI	AATT	2 cut(s)	260, 335
MnlI	CCTC	6 cut(s)	32, 39, 115, 204, 249, 283
MslI	CAYNNNNRTG	1 cut(s)	417
MspA1I	CMGCKG	1 cut(s)	313
Mva1269I	GAATGC	1 cut(s)	312
MwoI	GCNNNNNNNGC	4 cut(s)	122, 155, 405, 434
NdeII	GATC	2 cut(s)	291, 295
NlaIII	CATG	1 cut(s)	284
NlaIV	GGNNCC	1 cut(s)	495
NmuCI	GTSAC	1 cut(s)	385
OliI	CACNNNNGTG	1 cut(s)	417
PceI	AGGCCT	1 cut(s)	185
PctI	GAATGC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	103
PflFI	GACNNNGTC	1 cut(s)	380
PkrI	GCNGC	4 cut(s)	17, 118, 312, 436
Ppu21I	YACGTR	3 cut(s)	250, 289, 473
PsiI	TTATAA	1 cut(s)	512
PspN4I	GGNNCC	1 cut(s)	495
PstI	CTGCAG	1 cut(s)	430
PstNI	CAGNNNCTG	1 cut(s)	434
PsyI	GACNNNGTC	1 cut(s)	380
PvuII	CAGCTG	1 cut(s)	313
RseI	CAYNNNNRTG	1 cut(s)	417
SatI	GCNGC	4 cut(s)	16, 117, 311, 435
Sau3AI	GATC	2 cut(s)	291, 295
SetI	ASST	8 cut(s)	20, 50, 156, 236, 252, 291, 315, 475
SfaNI	GCATC	2 cut(s)	346, 408
SfcI	CTRYAG	1 cut(s)	426
SmiMI	CAYNNNNRTG	1 cut(s)	417
SnaBI	TACGTA	1 cut(s)	473
Sse9I	AATT	2 cut(s)	260, 335
SseBI	AGGCCT	1 cut(s)	185
SsiI	CCGC	5 cut(s)	119, 158, 318, 359, 374
StuI	AGGCCT	1 cut(s)	185
StyI	CCWWGG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	380, 416
TaiI	ACGT	3 cut(s)	252, 291, 475
TaqI	TCGA	1 cut(s)	294
TasI	AATT	2 cut(s)	260, 335
TfiI	GAWTC	1 cut(s)	103
TscAI	CASTG	2 cut(s)	419, 435
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	4 cut(s)	15, 116, 310, 434
Tsp45I	GTSAC	1 cut(s)	385
TspRI	CASTG	2 cut(s)	419, 435
Tth111I	GACNNNGTC	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.