Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

23873774 .. 23875300

Gene Structure 1527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCTGCTGGTTATAATGGAACTGAGGTACCCATCCTACCAAACACTCTTCCGCAATACTCAGAAGATAATCCGCAGCTACTGTTCGACATATTTGTGACCCAAACCCGAAAGGCACCACTTTCCATTCCTATGAGCTATATAGACTCGGACTCGTCAGATGAAGGGGAACCTAGACTTGAAGGTCATATTGGTCCATTAGGGAGTCAAAGCAAACCTCTCTTTGTACCTATGAGTGGTCCGTTATATGCTAACCACAGGCCTGGTAGCATTTTCCGGGCAGCTCAAGCTCTAACAGCAGGGCAAGAAGTGGTGGAACCCGCAGGAGAATATTTTCCTTCTACCAATGCAACAAACCAGAACGATTGGACGGATGAAAACTATGCGGGTAAAAATGACCACTTGCTGAGATCTGGCCGACTGGGGCTGTGCGATCGATCGATCACTTACTGCACAACTTGCCCAACATACAATCCCAAGGCTGCTAATCGAAGGATTTCAGATATAGTTGATTCCAAGTTCCATAGTGCTCTGTATGGGGATGCCAAAGGCAGTGCAAGGAGTTTTTTCTCTTTTCTGCGTCCATGTATACCTGGAGTTATGAACCCTCATGCTAAAGTTGTGCAACAATGGAACAAATTTTTCGTCATTTCTTGCCTAATAACAATTTTTTGTTGTGGACAAAGAAATAGAGAAAGGAGGGAAGCAACAAGCTTTGGTAAAAAAACACTTGGACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005216 GO:0005244 GO:0005249 GO:0005261 GO:0005267 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0008150 GO:0008324 GO:0009605 GO:0009607 GO:0009624 GO:0009987 GO:0015075 GO:0015077 GO:0015079 GO:0015267 GO:0015318 GO:0015672 GO:0016020 GO:0016021 GO:0022803 GO:0022832 GO:0022836 GO:0022838 GO:0022839 GO:0022843 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042391 GO:0043207 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055085 GO:0065007 GO:0065008 GO:0071804 GO:0071805 GO:0071944 GO:0098655 GO:0098660 GO:0098662

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Ion_trans

Protein Analysis

247

Amino Acids

27.18

Weight (kDa)

8.14

Isoelectric Point (pI)

47.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
AasI	GACNNNNNNGTC	1 cut(s)	183
Acc65I	GGTACC	1 cut(s)	28
AccB1I	GGYRCC	2 cut(s)	28, 115
AccI	GTMKAC	1 cut(s)	589
AciI	CCGC	4 cut(s)	53, 74, 321, 386
AcoI	YGGCCR	1 cut(s)	415
AcsI	RAATTY	1 cut(s)	638
AfaI	GTAC	2 cut(s)	30, 228
AfiI	CCNNNNNNNGG	1 cut(s)	236
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	2 cut(s)	262, 592
AjuI	GAANNNNNNNTTGG	2 cut(s)	174, 206
AluBI	AGCT	5 cut(s)	79, 138, 284, 290, 714
AluI	AGCT	5 cut(s)	79, 138, 284, 290, 714
Alw21I	GWGCWC	1 cut(s)	532
AlwNI	CAGNNNCTG	1 cut(s)	82
AoxI	GGCC	2 cut(s)	260, 415
ApeKI	GCWGC	4 cut(s)	5, 76, 281, 482
ApoI	RAATTY	1 cut(s)	638
ArsI	GACNNNNNNTTYG	2 cut(s)	630, 662
Asp700I	GAANNNNTTC	2 cut(s)	333, 496
Asp718I	GGTACC	1 cut(s)	28
AspS9I	GGNCC	2 cut(s)	194, 239
AsuC2I	CCSGG	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	194, 239
BaeI	ACNNNNGTAYC	2 cut(s)	12, 45
BanI	GGYRCC	2 cut(s)	28, 115
Bbv12I	GWGCWC	1 cut(s)	532
BbvI	GCAGC	3 cut(s)	88, 293, 469
BccI	CCATC	1 cut(s)	41
BciT130I	CCWGG	2 cut(s)	264, 594
BcnI	CCSGG	1 cut(s)	278
BfaI	CTAG	1 cut(s)	174
BglII	AGATCT	1 cut(s)	410
BisI	GCNGC	4 cut(s)	6, 77, 282, 483
BlsI	GCNGC	4 cut(s)	7, 78, 283, 484
Bme1390I	CCNGG	3 cut(s)	264, 278, 594
Bme18I	GGWCC	2 cut(s)	194, 239
BmgT120I	GGNCC	2 cut(s)	194, 239
BmiI	GGNNCC	4 cut(s)	30, 117, 171, 318
BmrFI	CCNGG	3 cut(s)	264, 278, 594
BmrI	ACTGGG	1 cut(s)	431
BmsI	GCATC	1 cut(s)	532
BmuI	ACTGGG	1 cut(s)	431
BpmI	CTGGAG	1 cut(s)	615
BpuEI	CTTGAG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	278
Bsa29I	ATCGAT	2 cut(s)	436, 440
BsaJI	CCNNGG	1 cut(s)	477
Bsc4I	CCNNNNNNNGG	1 cut(s)	236
Bse1I	ACTGG	1 cut(s)	426
BseBI	CCWGG	2 cut(s)	264, 594
BseCI	ATCGAT	2 cut(s)	436, 440
BseDI	CCNNGG	1 cut(s)	477
BseGI	GGATG	3 cut(s)	33, 379, 547
BseLI	CCNNNNNNNGG	1 cut(s)	236
BseMII	CTCAG	3 cut(s)	15, 75, 398
BseNI	ACTGG	1 cut(s)	426
BseXI	GCAGC	3 cut(s)	88, 293, 469
BsgI	GTGCAG	1 cut(s)	436
Bsh1285I	CGRYCG	2 cut(s)	436, 440
BshFI	GGCC	2 cut(s)	262, 417
BshNI	GGYRCC	2 cut(s)	28, 115
BshVI	ATCGAT	2 cut(s)	436, 440
BsiEI	CGRYCG	2 cut(s)	436, 440
BsiHKAI	GWGCWC	1 cut(s)	532
BsiSI	CCGG	1 cut(s)	277
BslI	CCNNNNNNNGG	1 cut(s)	236
BsnI	GGCC	2 cut(s)	262, 417
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	4 cut(s)	410, 433, 437, 441
BspACI	CCGC	4 cut(s)	53, 74, 321, 386
BspANI	GGCC	2 cut(s)	262, 417
BspCNI	CTCAG	3 cut(s)	16, 74, 399
BspDI	ATCGAT	2 cut(s)	436, 440
BspLI	GGNNCC	4 cut(s)	30, 117, 171, 318
BspT107I	GGYRCC	2 cut(s)	28, 115
BsrI	ACTGG	1 cut(s)	426
BssECI	CCNNGG	1 cut(s)	477
BssMI	GATC	4 cut(s)	410, 433, 437, 441
BssNAI	GTATAC	1 cut(s)	590
BssT1I	CCWWGG	1 cut(s)	477
Bst1107I	GTATAC	1 cut(s)	590
Bst2UI	CCWGG	2 cut(s)	264, 594
Bst4CI	ACNGT	1 cut(s)	84
Bst6I	CTCTTC	1 cut(s)	54
BstAPI	GCANNNNNTGC	1 cut(s)	459
BstDEI	CTNAG	3 cut(s)	24, 61, 407
BstF5I	GGATG	3 cut(s)	33, 379, 547
BstKTI	GATC	4 cut(s)	413, 436, 440, 444
BstMBI	GATC	4 cut(s)	410, 433, 437, 441
BstMCI	CGRYCG	2 cut(s)	436, 440
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 296, 459
BstNI	CCWGG	2 cut(s)	264, 594
BstSCI	CCNGG	3 cut(s)	262, 276, 592
BstV1I	GCAGC	3 cut(s)	88, 293, 469
BstX2I	RGATCY	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	410
BstZ17I	GTATAC	1 cut(s)	590
Bsu15I	ATCGAT	2 cut(s)	436, 440
BsuRI	GGCC	2 cut(s)	262, 417
BsuTUI	ATCGAT	2 cut(s)	436, 440
BtsCI	GGATG	3 cut(s)	33, 379, 547
BtsI	GCAGTG	1 cut(s)	559
BtsIMutI	CAGTG	1 cut(s)	559
CaiI	CAGNNNCTG	1 cut(s)	82
Cfr13I	GGNCC	2 cut(s)	194, 239
ClaI	ATCGAT	2 cut(s)	436, 440
CseI	GACGC	1 cut(s)	569
Csp6I	GTAC	2 cut(s)	29, 227
CviAII	CATG	2 cut(s)	585, 611
CviQI	GTAC	2 cut(s)	29, 227
DdeI	CTNAG	3 cut(s)	24, 61, 407
DpnI	GATC	4 cut(s)	412, 435, 439, 443
DpnII	GATC	4 cut(s)	410, 433, 437, 441
DrdI	GACNNNNNNGTC	1 cut(s)	183
DseDI	GACNNNNNNGTC	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	54
EarI	CTCTTC	1 cut(s)	54
Eco130I	CCWWGG	1 cut(s)	477
Eco147I	AGGCCT	1 cut(s)	262
Eco47I	GGWCC	2 cut(s)	194, 239
EcoRII	CCWGG	2 cut(s)	262, 592
EcoT14I	CCWWGG	1 cut(s)	477
ErhI	CCWWGG	1 cut(s)	477
FaeI	CATG	2 cut(s)	588, 614
FatI	CATG	2 cut(s)	584, 610
FauI	CCCGC	2 cut(s)	328, 379
FblI	GTMKAC	1 cut(s)	589
Fnu4HI	GCNGC	4 cut(s)	6, 77, 282, 483
FokI	GGATG	3 cut(s)	20, 386, 554
Fsp4HI	GCNGC	4 cut(s)	6, 77, 282, 483
FspBI	CTAG	1 cut(s)	174
GluI	GCNGC	4 cut(s)	6, 77, 282, 483
GsuI	CTGGAG	1 cut(s)	615
HaeIII	GGCC	2 cut(s)	262, 417
HapII	CCGG	1 cut(s)	277
HgaI	GACGC	1 cut(s)	569
Hin1II	CATG	2 cut(s)	588, 614
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	4 cut(s)	146, 152, 205, 512
HpaII	CCGG	1 cut(s)	277
Hpy166II	GTNNAC	2 cut(s)	590, 680
Hpy188I	TCNGA	4 cut(s)	64, 151, 160, 502
Hpy8I	GTNNAC	2 cut(s)	590, 680
HpyAV	CCTTC	4 cut(s)	158, 176, 348, 486
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4V	TGCA	4 cut(s)	350, 453, 557, 625
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 296, 459
HpyF3I	CTNAG	3 cut(s)	24, 61, 407
Hsp92II	CATG	2 cut(s)	588, 614
KpnI	GGTACC	1 cut(s)	32
Kzo9I	GATC	4 cut(s)	410, 433, 437, 441
Lsp1109I	GCAGC	3 cut(s)	88, 293, 469
LweI	GCATC	1 cut(s)	532
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	97
MalI	GATC	4 cut(s)	412, 435, 439, 443
MboI	GATC	4 cut(s)	410, 433, 437, 441
MboII	GAAGA	2 cut(s)	41, 77
MflI	RGATCY	1 cut(s)	410
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	2 cut(s)	638, 666
MlyI	GAGTC	3 cut(s)	140, 146, 214
MnlI	CCTC	4 cut(s)	19, 228, 618, 693
MroXI	GAANNNNTTC	2 cut(s)	333, 496
MslI	CAYNNNNRTG	2 cut(s)	95, 131
MspI	CCGG	1 cut(s)	277
MspR9I	CCNGG	3 cut(s)	264, 278, 594
MvaI	CCWGG	2 cut(s)	264, 594
MwoI	GCNNNNNNNGC	3 cut(s)	287, 296, 459
NciI	CCSGG	1 cut(s)	278
NdeII	GATC	4 cut(s)	410, 433, 437, 441
NlaIII	CATG	2 cut(s)	588, 614
NlaIV	GGNNCC	4 cut(s)	30, 117, 171, 318
NmuCI	GTSAC	1 cut(s)	97
PceI	AGGCCT	1 cut(s)	262
PdmI	GAANNNNTTC	2 cut(s)	333, 496
PfeI	GAWTC	1 cut(s)	512
PkrI	GCNGC	4 cut(s)	7, 78, 283, 484
Ple19I	CGATCG	2 cut(s)	436, 440
PleI	GAGTC	3 cut(s)	140, 146, 213
PpsI	GAGTC	3 cut(s)	140, 146, 213
PsiI	TTATAA	1 cut(s)	15
Psp6I	CCWGG	2 cut(s)	262, 592
PspGI	CCWGG	2 cut(s)	262, 592
PspN4I	GGNNCC	4 cut(s)	30, 117, 171, 318
PspPI	GGNCC	2 cut(s)	194, 239
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	1 cut(s)	410
PvuI	CGATCG	2 cut(s)	436, 440
RsaI	GTAC	2 cut(s)	30, 228
RsaNI	GTAC	2 cut(s)	29, 227
RseI	CAYNNNNRTG	2 cut(s)	95, 131
SatI	GCNGC	4 cut(s)	6, 77, 282, 483
Sau3AI	GATC	4 cut(s)	410, 433, 437, 441
Sau96I	GGNCC	2 cut(s)	194, 239
SchI	GAGTC	3 cut(s)	140, 146, 214
ScrFI	CCNGG	3 cut(s)	264, 278, 594
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	1 cut(s)	532
SinI	GGWCC	2 cut(s)	194, 239
SmiMI	CAYNNNNRTG	2 cut(s)	95, 131
SmlI	CTYRAG	1 cut(s)	285
SmoI	CTYRAG	1 cut(s)	285
Sse9I	AATT	2 cut(s)	638, 666
SseBI	AGGCCT	1 cut(s)	262
SsiI	CCGC	4 cut(s)	53, 74, 321, 386
SspI	AATATT	1 cut(s)	332
SspMI	CTAG	1 cut(s)	174
StuI	AGGCCT	1 cut(s)	262
StyD4I	CCNGG	3 cut(s)	262, 276, 592
StyI	CCWWGG	1 cut(s)	477
TaaI	ACNGT	1 cut(s)	84
TaqI	TCGA	4 cut(s)	87, 436, 440, 490
TasI	AATT	2 cut(s)	638, 666
TfiI	GAWTC	1 cut(s)	512
TscAI	CASTG	1 cut(s)	559
TseFI	GTSAC	1 cut(s)	97
TseI	GCWGC	4 cut(s)	5, 76, 281, 482
Tsp45I	GTSAC	1 cut(s)	97
TspDTI	ATGAA	3 cut(s)	177, 390, 617
TspGWI	ACGGA	2 cut(s)	231, 386
TspRI	CASTG	1 cut(s)	559
VpaK11BI	GGWCC	2 cut(s)	194, 239
XapI	RAATTY	1 cut(s)	638
XmiI	GTMKAC	1 cut(s)	589
XmnI	GAANNNNTTC	2 cut(s)	333, 496
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.