pycom06g21170

cyclic nucleotide-gated ion channel

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
23899136 .. 23899620
485 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 432 bp
ATGACATTGCGACTTTTTCTGTCTGATATCATAATACTGTTAGTTCTACCAGACAACTTGGGATTAAGAGGAGCAAATTATGCAAAAAATCTTTTACGTGCTTCAGTTCTTGTTCAGTATATTCCCAGGTTATTTAGGTTTCTGCCTCTGCTCGCTGGTCAGACTCCAAGTGGCTTCATATTTGAGTCAGCAGGGGCAAATTTTGTAATAAATATTCTCATTTTTGTGTTGGCTAGCCACGTTATTGGATCTTGCTGGTACCTCATGGGGCTACAGGTGGGTGGAAAAGGTTTTATTCATAACTCTCGGAAGTTTCCTGCGATAGACATGTTTATGTTCCTCGTGTGTCTTCATTTTGCATGTCCAGAATTATTAAAGGTCCATATACAATCTCTTCTCACCTTCTTGTCAAACAAGGAAGCAACTTGGTGA

Protein Analysis

144

Amino Acids

16.04

Weight (kDa)

9.45

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 258
AccB1I GGYRCC 1 cut(s) 258
AclWI GGATC 1 cut(s) 256
AcsI RAATTY 1 cut(s) 199
AcuI CTGAAG 1 cut(s) 87
AfaI GTAC 1 cut(s) 260
AflIII ACRYGT 1 cut(s) 327
AjnI CCWGG 1 cut(s) 125
AlwI GGATC 1 cut(s) 256
ApoI RAATTY 1 cut(s) 199
Asp718I GGTACC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 391
AsuNHI GCTAGC 1 cut(s) 233
AvaII GGWCC 1 cut(s) 379
BanI GGYRCC 1 cut(s) 258
BauI CACGAG 1 cut(s) 341
BbsI GAAGAC 1 cut(s) 341
BciT130I CCWGG 1 cut(s) 127
BfaI CTAG 1 cut(s) 234
BfmI CTRYAG 1 cut(s) 272
Bme1390I CCNGG 1 cut(s) 127
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 1 cut(s) 379
BmiI GGNNCC 1 cut(s) 260
BmrFI CCNGG 1 cut(s) 127
BmtI GCTAGC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 341
BsaAI YACGTR 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 125
Bse3DI GCAATG 1 cut(s) 5
BseBI CCWGG 1 cut(s) 127
BseDI CCNNGG 1 cut(s) 125
BseMI GCAATG 1 cut(s) 5
BseRI GAGGAG 1 cut(s) 84
BshNI GGYRCC 1 cut(s) 258
Bsp143I GATC 1 cut(s) 248
BspLI GGNNCC 1 cut(s) 260
BspOI GCTAGC 1 cut(s) 237
BspPI GGATC 1 cut(s) 256
BspT107I GGYRCC 1 cut(s) 258
BsrDI GCAATG 1 cut(s) 5
BssECI CCNNGG 1 cut(s) 125
BssMI GATC 1 cut(s) 248
BssSI CACGAG 1 cut(s) 341
Bst2BI CACGAG 1 cut(s) 341
Bst2UI CCWGG 1 cut(s) 127
Bst4CI ACNGT 1 cut(s) 39
Bst6I CTCTTC 1 cut(s) 399
BstAPI GCANNNNNTGC 1 cut(s) 80
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 2 cut(s) 153, 235
BstKTI GATC 1 cut(s) 251
BstMBI GATC 1 cut(s) 248
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstNI CCWGG 1 cut(s) 127
BstNSI RCATGY 2 cut(s) 331, 363
BstSCI CCNGG 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 272
BstV2I GAAGAC 1 cut(s) 341
BstX2I RGATCY 1 cut(s) 248
BstXI CCANNNNNNTGG 1 cut(s) 245
BstYI RGATCY 1 cut(s) 248
Cac8I GCNNGC 2 cut(s) 153, 235
Cfr13I GGNCC 1 cut(s) 379
Csp6I GTAC 1 cut(s) 259
CviAII CATG 3 cut(s) 265, 328, 360
CviJI RGCY 4 cut(s) 174, 233, 237, 271
CviKI_1 RGCY 4 cut(s) 174, 233, 237, 271
CviQI GTAC 1 cut(s) 259
DpnI GATC 1 cut(s) 250
DpnII GATC 1 cut(s) 248
Eam1104I CTCTTC 1 cut(s) 399
EarI CTCTTC 1 cut(s) 399
Eco32I GATATC 1 cut(s) 28
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 87
EcoRII CCWGG 1 cut(s) 125
EcoRV GATATC 1 cut(s) 28
FaeI CATG 3 cut(s) 268, 331, 363
FatI CATG 3 cut(s) 264, 327, 359
FspBI CTAG 1 cut(s) 234
Hin1II CATG 3 cut(s) 268, 331, 363
HinfI GANTC 2 cut(s) 163, 185
HphI GGTGA 1 cut(s) 391
Hpy188I TCNGA 3 cut(s) 25, 162, 309
Hpy188III TCNNGA 1 cut(s) 365
HpyAV CCTTC 1 cut(s) 412
HpyCH4III ACNGT 1 cut(s) 39
HpyCH4IV ACGT 2 cut(s) 97, 240
HpyCH4V TGCA 2 cut(s) 83, 359
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpySE526I ACGT 2 cut(s) 97, 240
Hsp92II CATG 3 cut(s) 268, 331, 363
KpnI GGTACC 1 cut(s) 262
Kzo9I GATC 1 cut(s) 248
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 9 cut(s) 63, 112, 139, 141, 177, 241, 260, 330, 378
MaeI CTAG 1 cut(s) 234
MaeII ACGT 2 cut(s) 97, 240
MalI GATC 1 cut(s) 250
MboI GATC 1 cut(s) 248
MboII GAAGA 2 cut(s) 341, 386
MflI RGATCY 1 cut(s) 248
MluCI AATT 3 cut(s) 76, 199, 368
MlyI GAGTC 2 cut(s) 157, 194
MnlI CCTC 4 cut(s) 62, 156, 272, 350
MseI TTAA 2 cut(s) 65, 374
MslI CAYNNNNRTG 2 cut(s) 224, 332
MspR9I CCNGG 1 cut(s) 127
MvaI CCWGG 1 cut(s) 127
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 1 cut(s) 248
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 3 cut(s) 268, 331, 363
NlaIV GGNNCC 1 cut(s) 260
NspI RCATGY 2 cut(s) 331, 363
PciI ACATGT 1 cut(s) 327
PleI GAGTC 2 cut(s) 157, 193
PpsI GAGTC 2 cut(s) 157, 193
Ppu21I YACGTR 1 cut(s) 98
PscI ACATGT 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 125
PspGI CCWGG 1 cut(s) 125
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 379
PsuI RGATCY 1 cut(s) 248
RsaI GTAC 1 cut(s) 260
RsaNI GTAC 1 cut(s) 259
RseI CAYNNNNRTG 2 cut(s) 224, 332
SaqAI TTAA 2 cut(s) 65, 374
Sau3AI GATC 1 cut(s) 248
Sau96I GGNCC 1 cut(s) 379
SchI GAGTC 2 cut(s) 157, 194
ScrFI CCNGG 1 cut(s) 127
SetI ASST 9 cut(s) 100, 131, 140, 243, 264, 279, 292, 381, 404
SfcI CTRYAG 1 cut(s) 272
SinI GGWCC 1 cut(s) 379
SmiMI CAYNNNNRTG 2 cut(s) 224, 332
Sse9I AATT 3 cut(s) 76, 199, 368
SspI AATATT 1 cut(s) 214
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 1 cut(s) 125
TaaI ACNGT 1 cut(s) 39
TaiI ACGT 2 cut(s) 100, 243
TasI AATT 3 cut(s) 76, 199, 368
Tru1I TTAA 2 cut(s) 65, 374
Tru9I TTAA 2 cut(s) 65, 374
TspDTI ATGAA 3 cut(s) 166, 287, 341
VpaK11BI GGWCC 1 cut(s) 379
XapI RAATTY 1 cut(s) 199
XceI RCATGY 2 cut(s) 331, 363
XspI CTAG 1 cut(s) 234
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.