pycom06g21310

At4g15970-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
23978979 .. 23979436
458 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 192 bp
ATGCATGCTAATTGTTGTATTGGTCTTGAAAACAAAGTGAACGATCTTAAAGCTTTGCTTCAAGTTTGGAAAAAATACATGTCATCGCCTCATAACACTACTGGCACATCACAAGCTGTGTGGACCGTCCCACAAAATTGCAGCACTTCCTTCCAACGCCGTTGGAAGCATAGTAACAGGACAAGGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

64

Amino Acids

7.32

Weight (kDa)

9.82

Isoelectric Point (pI)

71.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AflIII ACRYGT 1 cut(s) 78
AgsI TTSAA 2 cut(s) 29, 62
AluBI AGCT 2 cut(s) 53, 116
AluI AGCT 2 cut(s) 53, 116
ApeKI GCWGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 123
AvaII GGWCC 1 cut(s) 123
BbvI GCAGC 1 cut(s) 153
BceAI ACGGC 1 cut(s) 144
BisI GCNGC 1 cut(s) 142
BlsI GCNGC 1 cut(s) 143
Bme18I GGWCC 1 cut(s) 123
BmgT120I GGNCC 1 cut(s) 123
Bse1I ACTGG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 106
BseXI GCAGC 1 cut(s) 153
BslFI GGGAC 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 113
Bsp143I GATC 1 cut(s) 43
BsrI ACTGG 1 cut(s) 106
BssMI GATC 1 cut(s) 43
Bst4CI ACNGT 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 6
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstNSI RCATGY 2 cut(s) 8, 82
BstV1I GCAGC 1 cut(s) 153
BtgZI GCGATG 1 cut(s) 69
Cac8I GCNNGC 1 cut(s) 6
Cfr13I GGNCC 1 cut(s) 123
CspCI CAANNNNNGTGG 2 cut(s) 101, 136
CviAII CATG 2 cut(s) 5, 79
CviJI RGCY 2 cut(s) 53, 116
CviKI_1 RGCY 2 cut(s) 53, 116
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
Eco47I GGWCC 1 cut(s) 123
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 2 cut(s) 8, 82
FaiI YATR 4 cut(s) 6, 80, 93, 171
FalI AAGNNNNNCTT 2 cut(s) 42, 74
FaqI GGGAC 1 cut(s) 113
FatI CATG 2 cut(s) 4, 78
Fnu4HI GCNGC 1 cut(s) 142
Fsp4HI GCNGC 1 cut(s) 142
GluI GCNGC 1 cut(s) 142
Hin1II CATG 2 cut(s) 8, 82
HindIII AAGCTT 1 cut(s) 51
Hpy166II GTNNAC 2 cut(s) 40, 123
Hpy188III TCNNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 40, 123
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 127
HpyCH4V TGCA 2 cut(s) 4, 141
Hsp92II CATG 2 cut(s) 8, 82
Kzo9I GATC 1 cut(s) 43
LpnPI CCDG 2 cut(s) 87, 163
Lsp1109I GCAGC 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 173
MalI GATC 1 cut(s) 45
MboI GATC 1 cut(s) 43
MluCI AATT 2 cut(s) 10, 136
MmeI TCCRAC 2 cut(s) 143, 178
MnlI CCTC 1 cut(s) 99
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 48
NdeII GATC 1 cut(s) 43
NlaIII CATG 2 cut(s) 8, 82
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 82
PaeI GCATGC 1 cut(s) 8
PciI ACATGT 1 cut(s) 78
PkrI GCNGC 1 cut(s) 143
PscI ACATGT 1 cut(s) 78
PspPI GGNCC 1 cut(s) 123
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 1 cut(s) 142
Sau3AI GATC 1 cut(s) 43
Sau96I GGNCC 1 cut(s) 123
SetI ASST 2 cut(s) 55, 118
SgeI CNNG 6 cut(s) 17, 38, 74, 91, 114, 125
SinI GGWCC 1 cut(s) 123
SphI GCATGC 1 cut(s) 8
Sse9I AATT 2 cut(s) 10, 136
TaaI ACNGT 1 cut(s) 127
TasI AATT 2 cut(s) 10, 136
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 1 cut(s) 141
VpaK11BI GGWCC 1 cut(s) 123
XceI RCATGY 2 cut(s) 8, 82
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.