pycom06g21340

Rhodanese-like domain-containing protein 8

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Reverse (-)
23998278 .. 23998937
660 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 198 bp
ATGATCAAAGACGCGGAGGCGGAGGCGGCCAAGCATCTCTCTTTCGTAGAGGGTCTCAACATACGTGGGCGGATATATCTGAATGAACAAGGGATAATGCACAGATATCACCCCCGCTTCCAGTTAGAAGGAAGTATTTCACATCTTCCTTTGCTGGACCCTTCAATGCGAGCAACACCTCTATCTCCATCTGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

66

Amino Acids

7.37

Weight (kDa)

6.4

Isoelectric Point (pI)

41.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 14
AciI CCGC 5 cut(s) 14, 20, 26, 70, 115
AcoI YGGCCR 1 cut(s) 27
AgsI TTSAA 1 cut(s) 165
Alw26I GTCTC 1 cut(s) 59
AoxI GGCC 1 cut(s) 27
Asp700I GAANNNNTTC 1 cut(s) 136
AspS9I GGNCC 1 cut(s) 157
AsuHPI GGTGA 1 cut(s) 101
AvaII GGWCC 1 cut(s) 157
BccI CCATC 1 cut(s) 196
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 1 cut(s) 59
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme18I GGWCC 1 cut(s) 157
BmgT120I GGNCC 1 cut(s) 157
BmiI GGNNCC 1 cut(s) 159
BmsI GCATC 1 cut(s) 43
BsaAI YACGTR 1 cut(s) 65
BsaI GGTCTC 1 cut(s) 59
Bse1I ACTGG 1 cut(s) 121
BseNI ACTGG 1 cut(s) 121
Bsh1236I CGCG 1 cut(s) 14
BshFI GGCC 1 cut(s) 29
BsmAI GTCTC 1 cut(s) 59
BsnI GGCC 1 cut(s) 29
Bso31I GGTCTC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 3
BspACI CCGC 5 cut(s) 14, 20, 26, 70, 115
BspANI GGCC 1 cut(s) 29
BspFNI CGCG 1 cut(s) 14
BspLI GGNNCC 1 cut(s) 159
BspTNI GGTCTC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 121
BssMI GATC 1 cut(s) 3
BstBAI YACGTR 1 cut(s) 65
BstC8I GCNNGC 1 cut(s) 171
BstFNI CGCG 1 cut(s) 14
BstKTI GATC 1 cut(s) 6
BstMAI GTCTC 1 cut(s) 59
BstMBI GATC 1 cut(s) 3
BstMWI GCNNNNNNNGC 1 cut(s) 26
BstUI CGCG 1 cut(s) 14
BsuRI GGCC 1 cut(s) 29
Cac8I GCNNGC 1 cut(s) 171
Cfr13I GGNCC 1 cut(s) 157
CseI GACGC 1 cut(s) 20
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviJI RGCY 1 cut(s) 29
CviKI_1 RGCY 1 cut(s) 29
DpnI GATC 1 cut(s) 5
DpnII GATC 1 cut(s) 3
EaeI YGGCCR 1 cut(s) 27
EciI GGCGGA 2 cut(s) 35, 85
Eco31I GGTCTC 1 cut(s) 59
Eco32I GATATC 1 cut(s) 107
Eco47I GGWCC 1 cut(s) 157
EcoRV GATATC 1 cut(s) 107
FaiI YATR 2 cut(s) 62, 76
FauI CCCGC 1 cut(s) 122
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
HaeIII GGCC 1 cut(s) 29
HgaI GACGC 1 cut(s) 20
HphI GGTGA 1 cut(s) 101
Hpy188I TCNGA 2 cut(s) 81, 193
HpyAV CCTTC 2 cut(s) 122, 171
HpyCH4IV ACGT 1 cut(s) 64
HpyCH4V TGCA 1 cut(s) 100
HpyF10VI GCNNNNNNNGC 1 cut(s) 26
HpySE526I ACGT 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 1 cut(s) 3
LpnPI CCDG 2 cut(s) 134, 140
LweI GCATC 1 cut(s) 43
MaeII ACGT 1 cut(s) 64
MalI GATC 1 cut(s) 5
MboI GATC 1 cut(s) 3
MboII GAAGA 1 cut(s) 137
MnlI CCTC 4 cut(s) 10, 16, 43, 189
MroXI GAANNNNTTC 1 cut(s) 136
MslI CAYNNNNRTG 1 cut(s) 193
MvnI CGCG 1 cut(s) 14
MwoI GCNNNNNNNGC 1 cut(s) 26
NdeII GATC 1 cut(s) 3
NlaIV GGNNCC 1 cut(s) 159
PdmI GAANNNNTTC 1 cut(s) 136
PkrI GCNGC 1 cut(s) 28
Ppu21I YACGTR 1 cut(s) 65
PspN4I GGNNCC 1 cut(s) 159
PspPI GGNCC 1 cut(s) 157
RseI CAYNNNNRTG 1 cut(s) 193
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 1 cut(s) 3
Sau96I GGNCC 1 cut(s) 157
SetI ASST 2 cut(s) 67, 181
SfaNI GCATC 1 cut(s) 43
SgeI CNNG 8 cut(s) 25, 43, 77, 101, 126, 133, 167, 182
SinI GGWCC 1 cut(s) 157
SmiMI CAYNNNNRTG 1 cut(s) 193
SsiI CCGC 5 cut(s) 14, 20, 26, 70, 115
TaiI ACGT 1 cut(s) 67
TauI GCSGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 99
VpaK11BI GGWCC 1 cut(s) 157
XmnI GAANNNNTTC 1 cut(s) 136
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.