pycom06g21480

Peptidoglycan-binding LysM domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
N/A
Physical Location & Seq
Forward (+)
24099354 .. 24100241
888 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 531 bp
ATGCCGTATGGATCTGCTTTTGTGTCGGTTTGCTTTCTGAAAAACTCTCCACTCCCAACCAAGACATTGGATTTGAGGCAATCAGGCCCGCAGCTGCCAAGGGACGAGAGATCGGAGAAAAGTGGCAGATCAATTATGTCTCCTTCCAATCCAAGGTCGGTCGAGAATAATGGAGGAGGCGGCGGCGGCGGCGGCAAGAATTACATCGAGCACCAAGTCTCCAAGAGGGACACACTCGCCGGCGTTGCCATCAAATACGGCGTCGAGGTGTGTGACATTAAAAGGATGAATGGGTTTGCTACAGATCTTCAAATGTTTGCTTTGAACACCTTGAAAATACCTTTGCCTGGAAGACATCCTCCCTCTATTCCTTCTCCAACCACAACCACCGCCACAAGAGAAAACGGCACTGAAAAATCCACTCCTTGTCTTGGCCTATCTATTGGTTCAAAACCTCCCAAAGAGAAGAAGGTCACTACAGCAATGAGCACTTTACAGAAATACTATGGTCTAAGATCGATCCGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LysM

Protein Analysis

177

Amino Acids

18.95

Weight (kDa)

9.89

Isoelectric Point (pI)

58.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 89, 180, 183, 186, 189, 192, 390
AclWI GGATC 2 cut(s) 19, 514
AcsI RAATTY 1 cut(s) 525
AcyI GRCGYC 1 cut(s) 261
AfiI CCNNNNNNNGG 3 cut(s) 153, 347, 431
AgsI TTSAA 4 cut(s) 311, 325, 334, 450
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 1 cut(s) 94
AluI AGCT 1 cut(s) 94
Alw21I GWGCWC 2 cut(s) 213, 491
Alw26I GTCTC 2 cut(s) 144, 223
AlwI GGATC 2 cut(s) 19, 514
AoxI GGCC 2 cut(s) 85, 433
ApeKI GCWGC 2 cut(s) 91, 94
ApoI RAATTY 1 cut(s) 525
ArsI GACNNNNNNTTYG 4 cut(s) 55, 87, 246, 278
AspS9I GGNCC 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 358
Bbv12I GWGCWC 2 cut(s) 213, 491
BbvI GCAGC 2 cut(s) 81, 103
BccI CCATC 1 cut(s) 257
BceAI ACGGC 2 cut(s) 274, 421
BciT130I CCWGG 1 cut(s) 348
BcoDI GTCTC 2 cut(s) 144, 223
BfmI CTRYAG 2 cut(s) 300, 477
BglII AGATCT 1 cut(s) 304
BisI GCNGC 7 cut(s) 92, 95, 181, 184, 187, 190, 193
BlsI GCNGC 7 cut(s) 93, 96, 182, 185, 188, 191, 194
Bme1390I CCNGG 1 cut(s) 348
BmgT120I GGNCC 1 cut(s) 86
BmrFI CCNGG 1 cut(s) 348
BpiI GAAGAC 1 cut(s) 358
Bsa29I ATCGAT 1 cut(s) 518
BsaHI GRCGYC 1 cut(s) 261
BsaJI CCNNGG 2 cut(s) 98, 152
BsaXI ACNNNNNCTCC 2 cut(s) 203, 233
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 347, 431
Bse118I RCCGGY 1 cut(s) 239
Bse3DI GCAATG 1 cut(s) 489
BseBI CCWGG 1 cut(s) 348
BseCI ATCGAT 1 cut(s) 518
BseDI CCNNGG 2 cut(s) 98, 152
BseGI GGATG 2 cut(s) 291, 355
BseLI CCNNNNNNNGG 3 cut(s) 153, 347, 431
BseMI GCAATG 1 cut(s) 489
BseRI GAGGAG 1 cut(s) 189
BseXI GCAGC 2 cut(s) 81, 103
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 2 cut(s) 87, 435
BshVI ATCGAT 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 162
BsiHKAI GWGCWC 2 cut(s) 213, 491
BsiSI CCGG 1 cut(s) 240
BslFI GGGAC 2 cut(s) 116, 242
BslI CCNNNNNNNGG 3 cut(s) 153, 347, 431
BsmAI GTCTC 2 cut(s) 144, 223
BsmFI GGGAC 2 cut(s) 116, 242
BsnI GGCC 2 cut(s) 87, 435
Bsp1286I GDGCHC 2 cut(s) 213, 491
Bsp143I GATC 6 cut(s) 11, 110, 128, 304, 515, 519
BspACI CCGC 7 cut(s) 89, 180, 183, 186, 189, 192, 390
BspANI GGCC 2 cut(s) 87, 435
BspDI ATCGAT 1 cut(s) 518
BspPI GGATC 2 cut(s) 19, 514
BsrDI GCAATG 1 cut(s) 489
BsrFI RCCGGY 1 cut(s) 239
BssAI RCCGGY 1 cut(s) 239
BssECI CCNNGG 2 cut(s) 98, 152
BssMI GATC 6 cut(s) 11, 110, 128, 304, 515, 519
BssNI GRCGYC 1 cut(s) 261
BssT1I CCWWGG 2 cut(s) 98, 152
Bst2UI CCWGG 1 cut(s) 348
BstACI GRCGYC 1 cut(s) 261
BstC8I GCNNGC 2 cut(s) 89, 241
BstDEI CTNAG 1 cut(s) 512
BstF5I GGATG 2 cut(s) 291, 355
BstKTI GATC 6 cut(s) 14, 113, 131, 307, 518, 522
BstMAI GTCTC 2 cut(s) 144, 223
BstMBI GATC 6 cut(s) 11, 110, 128, 304, 515, 519
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 4 cut(s) 186, 189, 192, 245
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 2 cut(s) 300, 477
BstV1I GCAGC 2 cut(s) 81, 103
BstV2I GAAGAC 1 cut(s) 358
BstX2I RGATCY 2 cut(s) 11, 304
BstXI CCANNNNNNTGG 1 cut(s) 67
BstYI RGATCY 2 cut(s) 11, 304
Bsu15I ATCGAT 1 cut(s) 518
BsuRI GGCC 2 cut(s) 87, 435
BsuTUI ATCGAT 1 cut(s) 518
BtsCI GGATG 2 cut(s) 291, 355
BtsIMutI CAGTG 1 cut(s) 408
Cac8I GCNNGC 2 cut(s) 89, 241
Cfr10I RCCGGY 1 cut(s) 239
Cfr13I GGNCC 1 cut(s) 86
ClaI ATCGAT 1 cut(s) 518
CseI GACGC 1 cut(s) 250
CviJI RGCY 3 cut(s) 87, 94, 435
CviKI_1 RGCY 3 cut(s) 87, 94, 435
DdeI CTNAG 1 cut(s) 512
DpnI GATC 6 cut(s) 13, 112, 130, 306, 517, 521
DpnII GATC 6 cut(s) 11, 110, 128, 304, 515, 519
Eco130I CCWWGG 2 cut(s) 98, 152
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 2 cut(s) 98, 152
ErhI CCWWGG 2 cut(s) 98, 152
FaiI YATR 3 cut(s) 9, 137, 507
FaqI GGGAC 2 cut(s) 116, 242
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 7 cut(s) 92, 95, 181, 184, 187, 190, 193
FokI GGATG 2 cut(s) 298, 342
Fsp4HI GCNGC 7 cut(s) 92, 95, 181, 184, 187, 190, 193
GluI GCNGC 7 cut(s) 92, 95, 181, 184, 187, 190, 193
HaeIII GGCC 2 cut(s) 87, 435
HapII CCGG 1 cut(s) 240
HgaI GACGC 1 cut(s) 250
Hin1I GRCGYC 1 cut(s) 261
HpaII CCGG 1 cut(s) 240
Hpy188I TCNGA 3 cut(s) 39, 115, 524
Hpy188III TCNNGA 1 cut(s) 163
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 3 cut(s) 153, 381, 463
HpyF10VI GCNNNNNNNGC 4 cut(s) 186, 189, 192, 245
HpyF3I CTNAG 1 cut(s) 512
Hsp92I GRCGYC 1 cut(s) 261
KroI GCCGGC 1 cut(s) 239
KroNI GCCGGC 1 cut(s) 241
Kzo9I GATC 6 cut(s) 11, 110, 128, 304, 515, 519
LpnPI CCDG 4 cut(s) 69, 253, 333, 360
Lsp1109I GCAGC 2 cut(s) 81, 103
MaeIII GTNAC 2 cut(s) 272, 472
MalI GATC 6 cut(s) 13, 112, 130, 306, 517, 521
MboI GATC 6 cut(s) 11, 110, 128, 304, 515, 519
MboII GAAGA 3 cut(s) 299, 363, 478
MflI RGATCY 2 cut(s) 11, 304
MhlI GDGCHC 2 cut(s) 213, 491
MluCI AATT 3 cut(s) 132, 199, 525
MmeI TCCRAC 1 cut(s) 401
MnlI CCTC 8 cut(s) 69, 167, 170, 219, 259, 369, 373, 465
MreI CGCCGGCG 1 cut(s) 239
MroNI GCCGGC 1 cut(s) 239
MseI TTAA 1 cut(s) 279
MspA1I CMGCKG 1 cut(s) 94
MspI CCGG 1 cut(s) 240
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 4 cut(s) 186, 189, 192, 245
NaeI GCCGGC 1 cut(s) 241
NdeII GATC 6 cut(s) 11, 110, 128, 304, 515, 519
NgoMIV GCCGGC 1 cut(s) 239
NmuCI GTSAC 2 cut(s) 272, 472
PdiI GCCGGC 1 cut(s) 241
PkrI GCNGC 7 cut(s) 93, 96, 182, 185, 188, 191, 194
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspPI GGNCC 1 cut(s) 86
PsuI RGATCY 2 cut(s) 11, 304
PvuII CAGCTG 1 cut(s) 94
SaqAI TTAA 1 cut(s) 279
SatI GCNGC 7 cut(s) 92, 95, 181, 184, 187, 190, 193
Sau3AI GATC 6 cut(s) 11, 110, 128, 304, 515, 519
Sau96I GGNCC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 2 cut(s) 213, 491
SetI ASST 7 cut(s) 96, 158, 270, 332, 343, 457, 474
SfcI CTRYAG 2 cut(s) 300, 477
SgrAI CRCCGGYG 1 cut(s) 239
Sse9I AATT 3 cut(s) 132, 199, 525
SsiI CCGC 7 cut(s) 89, 180, 183, 186, 189, 192, 390
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 2 cut(s) 98, 152
TaqI TCGA 4 cut(s) 162, 207, 264, 518
TaqII GACCGA 1 cut(s) 148
TasI AATT 3 cut(s) 132, 199, 525
TauI GCSGC 5 cut(s) 183, 186, 189, 192, 195
Tru1I TTAA 1 cut(s) 279
Tru9I TTAA 1 cut(s) 279
TscAI CASTG 1 cut(s) 415
TseFI GTSAC 2 cut(s) 272, 472
TseI GCWGC 2 cut(s) 91, 94
Tsp45I GTSAC 2 cut(s) 272, 472
TspDTI ATGAA 1 cut(s) 302
TspRI CASTG 1 cut(s) 415
XapI RAATTY 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.