pycom07g00090

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
89176 .. 89556
381 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ATGAGAGACATGGAGTCTTCACTATCTAAAACCAGCCGTACATACCCAGATTGCTCTACCATGTCCACAAAGCTCCGTGCTATGACTCAAAATGCTGAAGAGCAAGTTCTGTTGCAGAAGAAGCAAGTCTCTTCTCTGTTCAACCTTGCTGCAAGCACAACCCCAAAAGGCCTACACTGTCTTTCTATGCAGCTGACTGCAGAATATTTACTCTGGATTCCAAGGAGAGGCAGTTTCGTAACCAGAAAAAAAAATTACATGATCCAAAGCTCTATCATTATCCTGTTTTCTCCGACAATGTTCAGGCTGTACAGTGGTTGTGAACTCCACTGTTTCCACTGCCTTGAAACCAGAGAAGATTGTTTTCCATGTGGTTACTGA

Protein Analysis

127

Amino Acids

14.51

Weight (kDa)

8.9

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 256
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 2 cut(s) 40, 311
AfiI CCNNNNNNNGG 1 cut(s) 227
AgsI TTSAA 2 cut(s) 142, 347
AhdI GACNNNNNGTC 1 cut(s) 13
AluBI AGCT 3 cut(s) 73, 193, 270
AluI AGCT 3 cut(s) 73, 193, 270
Alw26I GTCTC 1 cut(s) 133
AlwI GGATC 1 cut(s) 256
AoxI GGCC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 149, 190
BbsI GAAGAC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 136, 202
BceAI ACGGC 1 cut(s) 21
BcoDI GTCTC 1 cut(s) 133
BfmI CTRYAG 1 cut(s) 198
BisI GCNGC 2 cut(s) 150, 191
BlsI GCNGC 2 cut(s) 151, 192
BmeRI GACNNNNNGTC 1 cut(s) 13
BpiI GAAGAC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 221
BsaXI ACNNNNNCTCC 2 cut(s) 217, 247
Bsc4I CCNNNNNNNGG 1 cut(s) 227
BseDI CCNNGG 1 cut(s) 221
BseLI CCNNNNNNNGG 1 cut(s) 227
BseXI GCAGC 2 cut(s) 136, 202
BshFI GGCC 1 cut(s) 171
BslI CCNNNNNNNGG 1 cut(s) 227
BsmAI GTCTC 1 cut(s) 133
BsnI GGCC 1 cut(s) 171
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 1 cut(s) 261
BspANI GGCC 1 cut(s) 171
BspMAI CTGCAG 1 cut(s) 202
BspPI GGATC 1 cut(s) 256
BspQI GCTCTTC 1 cut(s) 93
BsrGI TGTACA 1 cut(s) 309
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 1 cut(s) 261
BssT1I CCWWGG 1 cut(s) 221
Bst4CI ACNGT 3 cut(s) 179, 314, 332
Bst6I CTCTTC 2 cut(s) 93, 136
BstAUI TGTACA 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 154
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 1 cut(s) 133
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 1 cut(s) 121
BstSFI CTRYAG 1 cut(s) 198
BstV1I GCAGC 2 cut(s) 136, 202
BstV2I GAAGAC 1 cut(s) 9
BsuRI GGCC 1 cut(s) 171
BtsI GCAGTG 1 cut(s) 337
BtsIMutI CAGTG 4 cut(s) 175, 319, 328, 337
Cac8I GCNNGC 1 cut(s) 154
Csp6I GTAC 2 cut(s) 39, 310
CviAII CATG 4 cut(s) 10, 61, 259, 369
CviJI RGCY 6 cut(s) 36, 73, 171, 193, 270, 307
CviKI_1 RGCY 6 cut(s) 36, 73, 171, 193, 270, 307
CviQI GTAC 2 cut(s) 39, 310
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
DriI GACNNNNNGTC 1 cut(s) 13
Eam1104I CTCTTC 2 cut(s) 93, 136
Eam1105I GACNNNNNGTC 1 cut(s) 13
EarI CTCTTC 2 cut(s) 93, 136
Eco130I CCWWGG 1 cut(s) 221
Eco147I AGGCCT 1 cut(s) 171
Eco57I CTGAAG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 221
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 4 cut(s) 13, 64, 262, 372
FaiI YATR 7 cut(s) 11, 43, 62, 83, 188, 260, 370
FatI CATG 4 cut(s) 9, 60, 258, 368
Fnu4HI GCNGC 2 cut(s) 150, 191
Fsp4HI GCNGC 2 cut(s) 150, 191
GluI GCNGC 2 cut(s) 150, 191
HaeIII GGCC 1 cut(s) 171
Hin1II CATG 4 cut(s) 13, 64, 262, 372
HinfI GANTC 3 cut(s) 14, 85, 217
Hpy166II GTNNAC 2 cut(s) 66, 323
Hpy188I TCNGA 1 cut(s) 294
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 2 cut(s) 66, 323
HpyCH4III ACNGT 3 cut(s) 179, 314, 332
HpyCH4V TGCA 4 cut(s) 115, 152, 190, 200
HpyF10VI GCNNNNNNNGC 1 cut(s) 121
Hsp92II CATG 4 cut(s) 13, 64, 262, 372
Kzo9I GATC 1 cut(s) 261
LguI GCTCTTC 1 cut(s) 93
LmnI GCTCC 1 cut(s) 78
LpnPI CCDG 7 cut(s) 46, 60, 199, 256, 289, 296, 364
Lsp1109I GCAGC 2 cut(s) 136, 202
MaeIII GTNAC 2 cut(s) 238, 374
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MboII GAAGA 5 cut(s) 9, 110, 123, 130, 368
MluCI AATT 1 cut(s) 253
MlyI GAGTC 2 cut(s) 23, 79
MmeI TCCRAC 1 cut(s) 317
MnlI CCTC 1 cut(s) 221
MspA1I CMGCKG 1 cut(s) 193
MwoI GCNNNNNNNGC 1 cut(s) 121
NdeII GATC 1 cut(s) 261
NlaIII CATG 4 cut(s) 13, 64, 262, 372
PceI AGGCCT 1 cut(s) 171
PciSI GCTCTTC 1 cut(s) 93
PfeI GAWTC 1 cut(s) 217
PkrI GCNGC 2 cut(s) 151, 192
PleI GAGTC 2 cut(s) 22, 79
PpsI GAGTC 2 cut(s) 22, 79
PstI CTGCAG 1 cut(s) 202
PvuII CAGCTG 1 cut(s) 193
RsaI GTAC 2 cut(s) 40, 311
RsaNI GTAC 2 cut(s) 39, 310
SapI GCTCTTC 1 cut(s) 93
SatI GCNGC 2 cut(s) 150, 191
Sau3AI GATC 1 cut(s) 261
SchI GAGTC 2 cut(s) 23, 79
SetI ASST 4 cut(s) 75, 147, 195, 272
SfcI CTRYAG 1 cut(s) 198
Sse9I AATT 1 cut(s) 253
SseBI AGGCCT 1 cut(s) 171
SspI AATATT 1 cut(s) 206
StuI AGGCCT 1 cut(s) 171
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 3 cut(s) 179, 314, 332
TasI AATT 1 cut(s) 253
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 1 cut(s) 217
TscAI CASTG 4 cut(s) 182, 319, 335, 344
TseI GCWGC 2 cut(s) 149, 190
TspGWI ACGGA 1 cut(s) 65
TspRI CASTG 4 cut(s) 182, 319, 335, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.