Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

684372 .. 684906

Gene Structure 535 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAACATATACTTCCGGTACAATGTCTTATTTAAAGTCTACTTTGGTTTTCCAGAGAAAGATCGACATAGTATTGGATCTCACGTACGGGATGCTGCAGCTTATGTTTGCTGGGCTTTTGGCCATGCATATTATCACACGGATATGAGAAATATACCGCACCAGCTTGCGCCATACATTCTGACACTGGCCTGCTACGACCGCGAGGTTAATTGTAGAAGAGCAGCTGCTGCAGCTTTTCAAGAGAATGTTGGACGGCAGGGTAGTTACCCTCATGGAATTGACATAGTGAATACTGCGGACCATTTTTCACTTTCTTCACGAGTAAACTCTTATGTTCATGTTGCTGTCTCCATTGCTCAATATGAGGGTTGTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005911 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0007275 GO:0008047 GO:0008092 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0015631 GO:0016043 GO:0022414 GO:0022607 GO:0030054 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0034622 GO:0043085 GO:0043087 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048487 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0051336 GO:0051345 GO:0055044 GO:0060589 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFCD_C

Protein Analysis

127

Amino Acids

14.4

Weight (kDa)

7.75

Isoelectric Point (pI)

34.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_TBCD_2nd	PF25767	20 - 94	3.6e-36	Tubulin-specific chaperone D-like, ARM repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	39
AccII	CGCG	1 cut(s)	204
AciI	CCGC	3 cut(s)	158, 202, 299
AclWI	GGATC	1 cut(s)	85
AcoI	YGGCCR	1 cut(s)	121
AfaI	GTAC	2 cut(s)	20, 87
AgsI	TTSAA	1 cut(s)	242
AluBI	AGCT	4 cut(s)	101, 166, 227, 236
AluI	AGCT	4 cut(s)	101, 166, 227, 236
Alw26I	GTCTC	1 cut(s)	355
AlwI	GGATC	1 cut(s)	85
AlwNI	CAGNNNCTG	1 cut(s)	230
AoxI	GGCC	2 cut(s)	121, 189
ApeKI	GCWGC	6 cut(s)	95, 98, 224, 227, 230, 233
AspLEI	GCGC	1 cut(s)	172
AspS9I	GGNCC	1 cut(s)	301
AvaII	GGWCC	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	123
BauI	CACGAG	1 cut(s)	321
BbvI	GCAGC	6 cut(s)	82, 110, 214, 217, 236, 245
BceAI	ACGGC	1 cut(s)	272
BcoDI	GTCTC	1 cut(s)	355
BfmI	CTRYAG	2 cut(s)	96, 231
BisI	GCNGC	6 cut(s)	96, 99, 225, 228, 231, 234
BlsI	GCNGC	6 cut(s)	97, 100, 226, 229, 232, 235
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmsI	GCATC	1 cut(s)	82
BsaAI	YACGTR	1 cut(s)	85
BsaWI	WCCGGW	1 cut(s)	15
Bse1I	ACTGG	1 cut(s)	192
Bse3DI	GCAATG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	97
BseMI	GCAATG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	192
BseXI	GCAGC	6 cut(s)	82, 110, 214, 217, 236, 245
BseYI	CCCAGC	1 cut(s)	111
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	1 cut(s)	202
BshFI	GGCC	2 cut(s)	123, 191
BsiEI	CGRYCG	1 cut(s)	202
BsiSI	CCGG	1 cut(s)	16
BsiWI	CGTACG	1 cut(s)	85
BsmAI	GTCTC	1 cut(s)	355
BsnI	GGCC	2 cut(s)	123, 191
Bsp143I	GATC	2 cut(s)	61, 77
BspACI	CCGC	3 cut(s)	158, 202, 299
BspANI	GGCC	2 cut(s)	123, 191
BspFNI	CGCG	1 cut(s)	204
BspMAI	CTGCAG	2 cut(s)	100, 235
BspPI	GGATC	1 cut(s)	85
BspQI	GCTCTTC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	354
BsrI	ACTGG	1 cut(s)	192
BssMI	GATC	2 cut(s)	61, 77
BssSI	CACGAG	1 cut(s)	321
Bst2BI	CACGAG	1 cut(s)	321
Bst6I	CTCTTC	1 cut(s)	214
BstAPI	GCANNNNNTGC	1 cut(s)	230
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	2 cut(s)	168, 193
BstF5I	GGATG	1 cut(s)	97
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	2 cut(s)	64, 80
BstMAI	GTCTC	1 cut(s)	355
BstMBI	GATC	2 cut(s)	61, 77
BstMCI	CGRYCG	1 cut(s)	202
BstMWI	GCNNNNNNNGC	3 cut(s)	201, 230, 233
BstSFI	CTRYAG	2 cut(s)	96, 231
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	6 cut(s)	82, 110, 214, 217, 236, 245
BstX2I	RGATCY	1 cut(s)	77
BstYI	RGATCY	1 cut(s)	77
BsuRI	GGCC	2 cut(s)	123, 191
BtsCI	GGATG	1 cut(s)	97
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	2 cut(s)	168, 193
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	1 cut(s)	172
Cfr13I	GGNCC	1 cut(s)	301
Csp6I	GTAC	2 cut(s)	19, 86
CviAII	CATG	3 cut(s)	125, 275, 341
CviJI	RGCY	7 cut(s)	101, 116, 123, 166, 191, 227, 236
CviKI_1	RGCY	7 cut(s)	101, 116, 123, 166, 191, 227, 236
CviQI	GTAC	2 cut(s)	19, 86
DpnI	GATC	2 cut(s)	63, 79
DpnII	GATC	2 cut(s)	61, 77
DraI	TTTAAA	1 cut(s)	34
EaeI	YGGCCR	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco47I	GGWCC	1 cut(s)	301
EcoT22I	ATGCAT	1 cut(s)	130
FaeI	CATG	3 cut(s)	128, 278, 344
FatI	CATG	3 cut(s)	124, 274, 340
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	6 cut(s)	96, 99, 225, 228, 231, 234
FokI	GGATG	1 cut(s)	104
Fsp4HI	GCNGC	6 cut(s)	96, 99, 225, 228, 231, 234
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	6 cut(s)	96, 99, 225, 228, 231, 234
GsaI	CCCAGC	1 cut(s)	115
HaeIII	GGCC	2 cut(s)	123, 191
HapII	CCGG	1 cut(s)	16
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	3 cut(s)	128, 278, 344
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HpaII	CCGG	1 cut(s)	16
Hpy166II	GTNNAC	2 cut(s)	40, 328
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	3 cut(s)	53, 242, 321
Hpy8I	GTNNAC	2 cut(s)	40, 328
HpyCH4IV	ACGT	1 cut(s)	84
HpyCH4V	TGCA	3 cut(s)	98, 128, 233
HpyF10VI	GCNNNNNNNGC	3 cut(s)	201, 230, 233
HpySE526I	ACGT	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	128, 278, 344
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	2 cut(s)	61, 77
LguI	GCTCTTC	1 cut(s)	214
LpnPI	CCDG	7 cut(s)	29, 66, 97, 173, 176, 205, 245
Lsp1109I	GCAGC	6 cut(s)	82, 110, 214, 217, 236, 245
LweI	GCATC	1 cut(s)	82
MaeII	ACGT	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	2 cut(s)	63, 79
MboI	GATC	2 cut(s)	61, 77
MboII	GAAGA	2 cut(s)	231, 309
MflI	RGATCY	1 cut(s)	77
MlsI	TGGCCA	1 cut(s)	123
MluCI	AATT	2 cut(s)	211, 279
MluNI	TGGCCA	1 cut(s)	123
MmeI	TCCRAC	1 cut(s)	232
MnlI	CCTC	3 cut(s)	199, 282, 361
Mox20I	TGGCCA	1 cut(s)	123
Mph1103I	ATGCAT	1 cut(s)	130
MscI	TGGCCA	1 cut(s)	123
MseI	TTAA	3 cut(s)	33, 210, 379
MslI	CAYNNNNRTG	1 cut(s)	143
Msp20I	TGGCCA	1 cut(s)	123
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	1 cut(s)	16
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	3 cut(s)	201, 230, 233
NdeII	GATC	2 cut(s)	61, 77
NlaIII	CATG	3 cut(s)	128, 278, 344
NsiI	ATGCAT	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	214
Pfl23II	CGTACG	1 cut(s)	85
PkrI	GCNGC	6 cut(s)	97, 100, 226, 229, 232, 235
Ppu21I	YACGTR	1 cut(s)	85
PspFI	CCCAGC	1 cut(s)	111
PspLI	CGTACG	1 cut(s)	85
PspPI	GGNCC	1 cut(s)	301
PstI	CTGCAG	2 cut(s)	100, 235
PstNI	CAGNNNCTG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	2 cut(s)	20, 87
RsaNI	GTAC	2 cut(s)	19, 86
RseI	CAYNNNNRTG	1 cut(s)	143
SapI	GCTCTTC	1 cut(s)	214
SaqAI	TTAA	3 cut(s)	33, 210, 379
SatI	GCNGC	6 cut(s)	96, 99, 225, 228, 231, 234
Sau3AI	GATC	2 cut(s)	61, 77
Sau96I	GGNCC	1 cut(s)	301
SetI	ASST	6 cut(s)	87, 103, 168, 210, 229, 238
SfaNI	GCATC	1 cut(s)	82
SfcI	CTRYAG	2 cut(s)	96, 231
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	143
Sse9I	AATT	2 cut(s)	211, 279
SsiI	CCGC	3 cut(s)	158, 202, 299
TaiI	ACGT	1 cut(s)	87
TaqI	TCGA	1 cut(s)	64
TasI	AATT	2 cut(s)	211, 279
Tru1I	TTAA	3 cut(s)	33, 210, 379
Tru9I	TTAA	3 cut(s)	33, 210, 379
TscAI	CASTG	1 cut(s)	192
TseI	GCWGC	6 cut(s)	95, 98, 224, 227, 230, 233
TspDTI	ATGAA	2 cut(s)	17, 329
TspGWI	ACGGA	1 cut(s)	155
TspRI	CASTG	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	301
XmiI	GTMKAC	1 cut(s)	39
Zsp2I	ATGCAT	1 cut(s)	130

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.