pycom07g00820

Belongs to the mitochondrial carrier (TC 2.A.29) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
693371 .. 696247
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1119 bp
ATGGGTCAGGCGTCAGCCGATAAAAAGGAATCGTTTCTCTCGAAAGGGGCGTCTCCTCCACATCTCTCACGCTCTCGCTCTCAGTCTCTCTTTTGTCTTTGCGCATTTCAGCGTAGAGCTCAAAGCGGAGACGCCTCGCAGCCACCACCACCGAAGATTCTGTTTCTGATACGGTATATGTACATTCTTGTAGGGCAAGTGACAATGGTTGATCAGGTTCAACATCCTTCTGTCGTCCAGAAGGTAGCTGGCCAGCTCCTTCAGCAATCTATCCAGGGTTACGATAATGGCTTCCAAAGACCAGGAATGTACCAAAGACGTGCTTATGGGAACTACACTAATGCTGCACTGCAGTATCCCTTCATGCCAGCATGCAGAGCTACCACTGATATGTCTTTGGTTCCATCAACTGCATCACCCATCTTTGTTCAAGCCCCTGCGGAGAAAGGCCACTTTCTGATTGATTTTCTCATGGGTGGAGTCTCTGCTGCCGTGTCTAAAACTGCTGCTGCTCCAATTGAGCGTGTCAAGCTGTTGATTCAAAACCAGGATGAGATGATCGAACCTGGTCGTTTGTCTCAACCCTACAAGGGCATTGGGGAGTGCTTTAGCCGTACAATCAAGGAAGAGGGTTTTGGTTCATTGTGGAGAGGGAACACTGCCAATGTTATCCGTTACTTCCCAACTCAGGCCTTGAACTTTGCATTCAAAGATTACTTCAAGAGGCTGTTCAACTTCAAGAAAGACAGGGACGGTTATTGGAAATGGTTTGCTGGTAACTTGGCTTCAGGAGGTGCTGCTGGTGCTTCTTCTCTTTTCTTTGTCTACTCTTTGGATTATGCTCGTACTCGTTTGGCTAATGACGCTAAAGCTGCAAAGAAGGGAGGAGAAAGACAATTCAATGGTCTGGTTGATGTCTACAGGAAGACATTGAAATCTGATGGAATTGCCGGTCTTTACCGTGGATTCAACATCTCTTGTGTTGGAATAATTGTCTACCGTGGTCTCTACTTTGGACTGTATGATTCACTGAAGCCTGTTGTCTTGACTGGAGGCTTGCAGGTTATTTCTTTGCTAGCTTTGCCCTTGGTTGGCTCATCACCAATGGTGCTGGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000295 GO:0003674 GO:0005215 GO:0005346 GO:0005347 GO:0005471 GO:0005488 GO:0005507 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006855 GO:0006862 GO:0006996 GO:0007005 GO:0007006 GO:0008150 GO:0008509 GO:0008514 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0009987 GO:0015075 GO:0015215 GO:0015216 GO:0015217 GO:0015238 GO:0015291 GO:0015297 GO:0015301 GO:0015605 GO:0015711 GO:0015748 GO:0015865 GO:0015866 GO:0015867 GO:0015868 GO:0015893 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0016043 GO:0019866 GO:0022804 GO:0022857 GO:0030312 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0034220 GO:0042221 GO:0042493 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044429 GO:0044434 GO:0044435 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046902 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0051503 GO:0055085 GO:0061024 GO:0065007 GO:0065008 GO:0070013 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0090559 GO:0098588 GO:0098656 GO:0098805 GO:0099516 GO:1901264 GO:1901505 GO:1901679
KEGG Pathways
Metabolic & Signaling
ko00514 ko04020 ko04022 ko04217 ko04218 ko05012 ko05016 ko05166 map00514 map04020 map04022 map04217 map04218 map05012 map05016 map05166
Pfam Domains
Protein Families
Mito_carr

Protein Analysis

373

Amino Acids

40.97

Weight (kDa)

9.73

Isoelectric Point (pI)

42.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 151 - 247 8.4e-26 Mitochondrial carrier protein
Mito_carr PF00153 255 - 348 1.4e-20 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 103
Acc36I ACCTGC 1 cut(s) 1051
AccI GTMKAC 3 cut(s) 825, 918, 996
AciI CCGC 2 cut(s) 126, 440
AcoI YGGCCR 1 cut(s) 250
AcuI CTGAAG 3 cut(s) 245, 771, 1052
AcyI GRCGYC 3 cut(s) 11, 50, 132
AfaI GTAC 4 cut(s) 182, 311, 616, 847
AfiI CCNNNNNNNGG 3 cut(s) 590, 688, 1091
AjiI CACGTC 1 cut(s) 320
AjnI CCWGG 4 cut(s) 273, 301, 546, 565
AjuI GAANNNNNNNTTGG 2 cut(s) 618, 650
AluBI AGCT 7 cut(s) 119, 248, 256, 380, 532, 872, 1079
AluI AGCT 7 cut(s) 119, 248, 256, 380, 532, 872, 1079
Alw21I GWGCWC 1 cut(s) 121
Alw26I GTCTC 6 cut(s) 57, 90, 123, 487, 582, 1010
AoxI GGCC 3 cut(s) 250, 448, 690
ApeKI GCWGC 7 cut(s) 139, 344, 488, 506, 509, 797, 872
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
Asp700I GAANNNNTTC 1 cut(s) 33
AspLEI GCGC 1 cut(s) 104
AsuHPI GGTGA 2 cut(s) 408, 1092
AsuNHI GCTAGC 1 cut(s) 1075
BaeI ACNNNNGTAYC 2 cut(s) 338, 371
BalI TGGCCA 1 cut(s) 252
BanII GRGCYC 1 cut(s) 121
BarI GAAGNNNNNNTAC 2 cut(s) 769, 801
BbsI GAAGAC 1 cut(s) 932
Bbv12I GWGCWC 1 cut(s) 121
BbvI GCAGC 7 cut(s) 151, 331, 475, 493, 496, 784, 859
BccI CCATC 3 cut(s) 412, 428, 935
BceAI ACGGC 2 cut(s) 476, 597
BciT130I CCWGG 4 cut(s) 275, 303, 548, 567
BciVI GTATCC 1 cut(s) 366
BclI TGATCA 1 cut(s) 211
BcoDI GTCTC 6 cut(s) 57, 90, 123, 487, 582, 1010
BfaI CTAG 2 cut(s) 1076, 1117
BfmI CTRYAG 2 cut(s) 350, 919
BfuAI ACCTGC 1 cut(s) 1051
BfuI GTATCC 1 cut(s) 366
BisI GCNGC 7 cut(s) 140, 345, 489, 507, 510, 798, 873
BlsI GCNGC 7 cut(s) 141, 346, 490, 508, 511, 799, 874
Bme1390I CCNGG 4 cut(s) 275, 303, 548, 567
BmgBI CACGTC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 402
BmrFI CCNGG 4 cut(s) 275, 303, 548, 567
BmsI GCATC 1 cut(s) 422
BmtI GCTAGC 1 cut(s) 1079
BpiI GAAGAC 1 cut(s) 932
BpmI CTGGAG 1 cut(s) 1071
BsaHI GRCGYC 3 cut(s) 11, 50, 132
BsaI GGTCTC 1 cut(s) 1010
BsaJI CCNNGG 4 cut(s) 274, 961, 1000, 1086
Bsc4I CCNNNNNNNGG 3 cut(s) 590, 688, 1091
Bse118I RCCGGY 1 cut(s) 950
Bse1I ACTGG 1 cut(s) 1054
BseBI CCWGG 4 cut(s) 275, 303, 548, 567
BseDI CCNNGG 4 cut(s) 274, 961, 1000, 1086
BseGI GGATG 2 cut(s) 223, 556
BseLI CCNNNNNNNGG 3 cut(s) 590, 688, 1091
BseMII CTCAG 2 cut(s) 95, 701
BseNI ACTGG 1 cut(s) 1054
BseRI GAGGAG 2 cut(s) 45, 900
BseXI GCAGC 7 cut(s) 151, 331, 475, 493, 496, 784, 859
BsgI GTGCAG 1 cut(s) 330
BshFI GGCC 3 cut(s) 252, 450, 692
BsiHKAI GWGCWC 1 cut(s) 121
BsiSI CCGG 1 cut(s) 951
BslFI GGGAC 1 cut(s) 764
BslI CCNNNNNNNGG 3 cut(s) 590, 688, 1091
BsmAI GTCTC 6 cut(s) 57, 90, 123, 487, 582, 1010
BsmBI CGTCTC 2 cut(s) 57, 123
BsmFI GGGAC 1 cut(s) 764
BsmI GAATGC 1 cut(s) 704
BsnI GGCC 3 cut(s) 252, 450, 692
Bso31I GGTCTC 1 cut(s) 1010
Bsp1286I GDGCHC 1 cut(s) 121
Bsp1407I TGTACA 1 cut(s) 180
Bsp143I GATC 2 cut(s) 211, 558
BspACI CCGC 2 cut(s) 126, 440
BspANI GGCC 3 cut(s) 252, 450, 692
BspCNI CTCAG 2 cut(s) 94, 700
BspLI GGNNCC 1 cut(s) 402
BspMAI CTGCAG 1 cut(s) 354
BspMI ACCTGC 1 cut(s) 1051
BspOI GCTAGC 1 cut(s) 1079
BspTNI GGTCTC 1 cut(s) 1010
BsrFI RCCGGY 1 cut(s) 950
BsrGI TGTACA 1 cut(s) 180
BsrI ACTGG 1 cut(s) 1054
BssAI RCCGGY 1 cut(s) 950
BssECI CCNNGG 4 cut(s) 274, 961, 1000, 1086
BssMI GATC 2 cut(s) 211, 558
BssNI GRCGYC 3 cut(s) 11, 50, 132
BssT1I CCWWGG 1 cut(s) 1086
Bst2UI CCWGG 4 cut(s) 275, 303, 548, 567
Bst4CI ACNGT 5 cut(s) 174, 755, 962, 1001, 1020
Bst6I CTCTTC 1 cut(s) 621
BstACI GRCGYC 3 cut(s) 11, 50, 132
BstAUI TGTACA 1 cut(s) 180
BstC8I GCNNGC 6 cut(s) 250, 254, 369, 373, 1058, 1077
BstDEI CTNAG 2 cut(s) 81, 687
BstDSI CCRYGG 2 cut(s) 961, 1000
BstF5I GGATG 2 cut(s) 223, 556
BstHHI GCGC 1 cut(s) 104
BstKTI GATC 2 cut(s) 214, 561
BstMAI GTCTC 6 cut(s) 57, 90, 123, 487, 582, 1010
BstMBI GATC 2 cut(s) 211, 558
BstMWI GCNNNNNNNGC 7 cut(s) 262, 377, 529, 803, 863, 872, 1081
BstNI CCWGG 4 cut(s) 275, 303, 548, 567
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 4 cut(s) 273, 301, 546, 565
BstSFI CTRYAG 2 cut(s) 350, 919
BstV1I GCAGC 7 cut(s) 151, 331, 475, 493, 496, 784, 859
BstV2I GAAGAC 1 cut(s) 932
BsuI GTATCC 1 cut(s) 366
BsuRI GGCC 3 cut(s) 252, 450, 692
BtgI CCRYGG 2 cut(s) 961, 1000
BtrI CACGTC 1 cut(s) 320
BtsCI GGATG 2 cut(s) 223, 556
BtsI GCAGTG 2 cut(s) 347, 657
BtsIMutI CAGTG 4 cut(s) 347, 384, 657, 1028
BveI ACCTGC 1 cut(s) 1051
Cac8I GCNNGC 6 cut(s) 250, 254, 369, 373, 1058, 1077
CfoI GCGC 1 cut(s) 104
Cfr10I RCCGGY 1 cut(s) 950
CseI GACGC 3 cut(s) 39, 140, 872
CsiI ACCWGGT 1 cut(s) 565
Csp6I GTAC 4 cut(s) 181, 310, 615, 846
CviAII CATG 3 cut(s) 364, 372, 472
CviQI GTAC 4 cut(s) 181, 310, 615, 846
DdeI CTNAG 2 cut(s) 81, 687
DpnI GATC 2 cut(s) 213, 560
DpnII GATC 2 cut(s) 211, 558
EaeI YGGCCR 1 cut(s) 250
Eam1104I CTCTTC 1 cut(s) 621
EarI CTCTTC 1 cut(s) 621
Ecl136II GAGCTC 1 cut(s) 119
Eco130I CCWWGG 1 cut(s) 1086
Eco147I AGGCCT 1 cut(s) 692
Eco24I GRGCYC 1 cut(s) 121
Eco31I GGTCTC 1 cut(s) 1010
Eco53kI GAGCTC 1 cut(s) 119
Eco57I CTGAAG 3 cut(s) 245, 771, 1052
EcoICRI GAGCTC 1 cut(s) 119
EcoRII CCWGG 4 cut(s) 273, 301, 546, 565
EcoT14I CCWWGG 1 cut(s) 1086
EcoT38I GRGCYC 1 cut(s) 121
ErhI CCWWGG 1 cut(s) 1086
Esp3I CGTCTC 2 cut(s) 57, 123
FaeI CATG 3 cut(s) 367, 375, 475
FaiI YATR 9 cut(s) 177, 179, 327, 365, 373, 392, 473, 840, 1023
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 1 cut(s) 764
FatI CATG 3 cut(s) 363, 371, 471
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 3 cut(s) 825, 918, 996
Fnu4HI GCNGC 7 cut(s) 140, 345, 489, 507, 510, 798, 873
FokI GGATG 2 cut(s) 210, 563
FriOI GRGCYC 1 cut(s) 121
Fsp4HI GCNGC 7 cut(s) 140, 345, 489, 507, 510, 798, 873
FspBI CTAG 2 cut(s) 1076, 1117
FspI TGCGCA 1 cut(s) 103
GlaI GCGC 1 cut(s) 103
GluI GCNGC 7 cut(s) 140, 345, 489, 507, 510, 798, 873
GsuI CTGGAG 1 cut(s) 1071
HaeIII GGCC 3 cut(s) 252, 450, 692
HapII CCGG 1 cut(s) 951
HgaI GACGC 3 cut(s) 39, 140, 872
HhaI GCGC 1 cut(s) 104
Hin1I GRCGYC 3 cut(s) 11, 50, 132
Hin1II CATG 3 cut(s) 367, 375, 475
Hin6I GCGC 1 cut(s) 102
HinP1I GCGC 1 cut(s) 102
HinfI GANTC 6 cut(s) 29, 157, 480, 538, 966, 1025
HpaII CCGG 1 cut(s) 951
HphI GGTGA 2 cut(s) 408, 1092
Hpy166II GTNNAC 3 cut(s) 826, 919, 997
Hpy188I TCNGA 3 cut(s) 168, 459, 940
Hpy188III TCNNGA 6 cut(s) 40, 238, 721, 739, 789, 1045
Hpy8I GTNNAC 3 cut(s) 826, 919, 997
HpyAV CCTTC 5 cut(s) 235, 237, 269, 370, 874
HpyCH4III ACNGT 5 cut(s) 174, 755, 962, 1001, 1020
HpyCH4IV ACGT 1 cut(s) 319
HpyCH4V TGCA 7 cut(s) 347, 352, 375, 413, 704, 875, 1060
HpyF10VI GCNNNNNNNGC 7 cut(s) 262, 377, 529, 803, 863, 872, 1081
HpyF3I CTNAG 2 cut(s) 81, 687
HpySE526I ACGT 1 cut(s) 319
Hsp92I GRCGYC 3 cut(s) 11, 50, 132
Hsp92II CATG 3 cut(s) 367, 375, 475
HspAI GCGC 1 cut(s) 102
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 2 cut(s) 211, 558
LmnI GCTCC 2 cut(s) 261, 517
Lsp1109I GCAGC 7 cut(s) 151, 331, 475, 493, 496, 784, 859
LweI GCATC 1 cut(s) 422
MabI ACCWGGT 1 cut(s) 565
MaeI CTAG 2 cut(s) 1076, 1117
MaeII ACGT 1 cut(s) 319
MaeIII GTNAC 4 cut(s) 199, 278, 674, 776
MalI GATC 2 cut(s) 213, 560
MboI GATC 2 cut(s) 211, 558
MboII GAAGA 4 cut(s) 166, 638, 801, 937
MfeI CAATTG 1 cut(s) 516
MhlI GDGCHC 1 cut(s) 121
MlsI TGGCCA 1 cut(s) 252
MluCI AATT 4 cut(s) 516, 896, 945, 990
MluNI TGGCCA 1 cut(s) 252
MlyI GAGTC 1 cut(s) 489
MmeI TCCRAC 1 cut(s) 964
MnlI CCTC 8 cut(s) 66, 145, 622, 644, 717, 785, 878, 1046
Mox20I TGGCCA 1 cut(s) 252
MroXI GAANNNNTTC 1 cut(s) 33
MscI TGGCCA 1 cut(s) 252
MslI CAYNNNNRTG 1 cut(s) 389
Msp20I TGGCCA 1 cut(s) 252
MspI CCGG 1 cut(s) 951
MspR9I CCNGG 4 cut(s) 275, 303, 548, 567
MunI CAATTG 1 cut(s) 516
Mva1269I GAATGC 1 cut(s) 704
MvaI CCWGG 4 cut(s) 275, 303, 548, 567
MwoI GCNNNNNNNGC 7 cut(s) 262, 377, 529, 803, 863, 872, 1081
NdeII GATC 2 cut(s) 211, 558
NheI GCTAGC 1 cut(s) 1075
NlaIII CATG 3 cut(s) 367, 375, 475
NlaIV GGNNCC 1 cut(s) 402
NmuCI GTSAC 1 cut(s) 199
NsbI TGCGCA 1 cut(s) 103
NspI RCATGY 1 cut(s) 375
PaeI GCATGC 1 cut(s) 375
PceI AGGCCT 1 cut(s) 692
PcsI WCGNNNNNNNCGW 2 cut(s) 38, 47
PctI GAATGC 1 cut(s) 704
PdmI GAANNNNTTC 1 cut(s) 33
PfeI GAWTC 5 cut(s) 29, 157, 538, 966, 1025
PkrI GCNGC 7 cut(s) 141, 346, 490, 508, 511, 799, 874
PleI GAGTC 1 cut(s) 488
PpsI GAGTC 1 cut(s) 488
Psp124BI GAGCTC 1 cut(s) 121
Psp6I CCWGG 4 cut(s) 273, 301, 546, 565
PspGI CCWGG 4 cut(s) 273, 301, 546, 565
PspN4I GGNNCC 1 cut(s) 402
PstI CTGCAG 1 cut(s) 354
RsaI GTAC 4 cut(s) 182, 311, 616, 847
RsaNI GTAC 4 cut(s) 181, 310, 615, 846
RseI CAYNNNNRTG 1 cut(s) 389
SacI GAGCTC 1 cut(s) 121
SatI GCNGC 7 cut(s) 140, 345, 489, 507, 510, 798, 873
Sau3AI GATC 2 cut(s) 211, 558
SchI GAGTC 1 cut(s) 489
ScrFI CCNGG 4 cut(s) 275, 303, 548, 567
SduI GDGCHC 1 cut(s) 121
SexAI ACCWGGT 1 cut(s) 565
SfaNI GCATC 1 cut(s) 422
SfcI CTRYAG 2 cut(s) 350, 919
SmiMI CAYNNNNRTG 1 cut(s) 389
SphI GCATGC 1 cut(s) 375
Sse9I AATT 4 cut(s) 516, 896, 945, 990
SseBI AGGCCT 1 cut(s) 692
SsiI CCGC 2 cut(s) 126, 440
SspMI CTAG 2 cut(s) 1076, 1117
SstI GAGCTC 1 cut(s) 121
StuI AGGCCT 1 cut(s) 692
StyD4I CCNGG 4 cut(s) 273, 301, 546, 565
StyI CCWWGG 1 cut(s) 1086
TaaI ACNGT 5 cut(s) 174, 755, 962, 1001, 1020
TaiI ACGT 1 cut(s) 322
TaqI TCGA 2 cut(s) 41, 561
TasI AATT 4 cut(s) 516, 896, 945, 990
TatI WGTACW 1 cut(s) 180
TfiI GAWTC 5 cut(s) 29, 157, 538, 966, 1025
TscAI CASTG 4 cut(s) 354, 391, 664, 1035
TseFI GTSAC 1 cut(s) 199
TseI GCWGC 7 cut(s) 139, 344, 488, 506, 509, 797, 872
Tsp45I GTSAC 1 cut(s) 199
TspDTI ATGAA 2 cut(s) 352, 630
TspGWI ACGGA 1 cut(s) 662
TspRI CASTG 4 cut(s) 354, 391, 664, 1035
XceI RCATGY 1 cut(s) 375
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
XmiI GTMKAC 3 cut(s) 825, 918, 996
XmnI GAANNNNTTC 1 cut(s) 33
XspI CTAG 2 cut(s) 1076, 1117
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.