Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

760247 .. 761443

Gene Structure 1197 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGGCTGCATTTCAGACTTGCTTGCAGATGAGCTTTATTCTTGGTGTGGGTCTTGCTTTTGTTGTTGGAATTGGTCTGTATTTTGGAGCTGGAGTATTTTCTAGAGATGTTAACGTTTTGCACCTTATAAAGATTGGCCTCCCGTTTGTTGCAGCTACGCAACCGATCGATCCGCTGTCTTTTGTGTTTGATGGTGTGAACTTTGGAGCATCTGATTTTGCATATGCTGCATACTCATTGGTTCTGGTTGCCATAGCAAGCATTGTATCCTTGTTCCTCCTCTCAAAATCCCATGGTTTTGTTGGAATCTGGATTGCTTTAACCATTTATATGGCGTTACGTACATTTGCTGGTGTATGGAGGATGGGGACTGGAACTGGACCTTGGCGTTTTCTCAAGGGTCGTTCACCACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001101 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006820 GO:0006842 GO:0006855 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0006979 GO:0007154 GO:0008150 GO:0008324 GO:0008509 GO:0008514 GO:0009267 GO:0009605 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0015075 GO:0015137 GO:0015142 GO:0015238 GO:0015318 GO:0015711 GO:0015746 GO:0015849 GO:0015893 GO:0016020 GO:0016036 GO:0019725 GO:0022857 GO:0022890 GO:0030001 GO:0030003 GO:0031667 GO:0031668 GO:0031669 GO:0032870 GO:0033554 GO:0033993 GO:0034220 GO:0034599 GO:0034614 GO:0035674 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042891 GO:0042895 GO:0044464 GO:0046873 GO:0046916 GO:0046942 GO:0046943 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071702 GO:0071731 GO:0071732 GO:0071944 GO:0097305 GO:0097366 GO:0098655 GO:0098656 GO:0098771 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

139

Amino Acids

14.83

Weight (kDa)

9.65

Isoelectric Point (pI)

28.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	128
AciI	CCGC	1 cut(s)	173
AclI	AACGTT	1 cut(s)	114
AclWI	GGATC	1 cut(s)	164
AfaI	GTAC	1 cut(s)	343
AjuI	GAANNNNNNNTTGG	2 cut(s)	367, 399
AluBI	AGCT	3 cut(s)	33, 89, 155
AluI	AGCT	3 cut(s)	33, 89, 155
AlwI	GGATC	1 cut(s)	164
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	3 cut(s)	5, 152, 227
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	399
AvaII	GGWCC	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	164, 214
BccI	CCATC	2 cut(s)	185, 358
BciVI	GTATCC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	102
BfuI	GTATCC	1 cut(s)	277
BisI	GCNGC	3 cut(s)	6, 153, 228
BlsI	GCNGC	3 cut(s)	7, 154, 229
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmsI	GCATC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	111
BpuEI	CTTGAG	1 cut(s)	380
Bsa29I	ATCGAT	1 cut(s)	168
BsaAI	YACGTR	1 cut(s)	341
BsaJI	CCNNGG	2 cut(s)	292, 383
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
Bse1I	ACTGG	2 cut(s)	376, 382
BseCI	ATCGAT	1 cut(s)	168
BseDI	CCNNGG	2 cut(s)	292, 383
BseGI	GGATG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	376, 382
BseRI	GAGGAG	1 cut(s)	269
BseXI	GCAGC	2 cut(s)	164, 214
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	1 cut(s)	138
BshVI	ATCGAT	1 cut(s)	168
BsiEI	CGRYCG	1 cut(s)	168
BslFI	GGGAC	1 cut(s)	382
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	165, 169
Bsp19I	CCATGG	1 cut(s)	292
BspACI	CCGC	1 cut(s)	173
BspANI	GGCC	1 cut(s)	138
BspDI	ATCGAT	1 cut(s)	168
BspPI	GGATC	1 cut(s)	164
BsrI	ACTGG	2 cut(s)	376, 382
BssECI	CCNNGG	2 cut(s)	292, 383
BssMI	GATC	2 cut(s)	165, 169
BssT1I	CCWWGG	2 cut(s)	292, 383
Bst4CI	ACNGT	1 cut(s)	414
BstAPI	GCANNNNNTGC	1 cut(s)	227
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	23, 259
BstDSI	CCRYGG	1 cut(s)	292
BstF5I	GGATG	1 cut(s)	369
BstKTI	GATC	2 cut(s)	168, 172
BstMBI	GATC	2 cut(s)	165, 169
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	1 cut(s)	227
BstSNI	TACGTA	1 cut(s)	341
BstV1I	GCAGC	2 cut(s)	164, 214
BstXI	CCANNNNNNTGG	1 cut(s)	331
Bsu15I	ATCGAT	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	138
BsuTUI	ATCGAT	1 cut(s)	168
BtgI	CCRYGG	1 cut(s)	292
BtsCI	GGATG	1 cut(s)	369
Cac8I	GCNNGC	2 cut(s)	23, 259
Cfr13I	GGNCC	1 cut(s)	380
ClaI	ATCGAT	1 cut(s)	168
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	5 cut(s)	5, 33, 89, 138, 155
CviKI_1	RGCY	5 cut(s)	5, 33, 89, 138, 155
CviQI	GTAC	1 cut(s)	342
DpnI	GATC	2 cut(s)	167, 171
DpnII	GATC	2 cut(s)	165, 169
Eco105I	TACGTA	1 cut(s)	341
Eco130I	CCWWGG	2 cut(s)	292, 383
Eco47I	GGWCC	1 cut(s)	380
EcoT14I	CCWWGG	2 cut(s)	292, 383
ErhI	CCWWGG	2 cut(s)	292, 383
FaeI	CATG	1 cut(s)	296
FaiI	YATR	9 cut(s)	128, 223, 225, 232, 254, 294, 330, 332, 358
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	1 cut(s)	292
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	6, 153, 228
FokI	GGATG	1 cut(s)	376
Fsp4HI	GCNGC	3 cut(s)	6, 153, 228
FspBI	CTAG	1 cut(s)	102
GluI	GCNGC	3 cut(s)	6, 153, 228
GsuI	CTGGAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	138
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	1 cut(s)	306
HpaI	GTTAAC	1 cut(s)	112
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	3 cut(s)	112, 199, 407
Hpy188I	TCNGA	2 cut(s)	15, 214
Hpy188III	TCNNGA	2 cut(s)	102, 310
Hpy8I	GTNNAC	3 cut(s)	112, 199, 407
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4IV	ACGT	2 cut(s)	114, 340
HpyCH4V	TGCA	6 cut(s)	8, 25, 121, 152, 221, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	227
HpySE526I	ACGT	2 cut(s)	114, 340
Hsp92II	CATG	1 cut(s)	296
KspAI	GTTAAC	1 cut(s)	112
Kzo9I	GATC	2 cut(s)	165, 169
LmnI	GCTCC	2 cut(s)	86, 206
LpnPI	CCDG	6 cut(s)	75, 230, 295, 336, 357, 363
Lsp1109I	GCAGC	2 cut(s)	164, 214
LweI	GCATC	1 cut(s)	218
MaeI	CTAG	1 cut(s)	102
MaeII	ACGT	2 cut(s)	114, 340
MaeIII	GTNAC	1 cut(s)	336
MalI	GATC	2 cut(s)	167, 171
MboI	GATC	2 cut(s)	165, 169
MluCI	AATT	1 cut(s)	69
MmeI	TCCRAC	2 cut(s)	46, 283
MnlI	CCTC	4 cut(s)	149, 287, 290, 354
MseI	TTAA	2 cut(s)	111, 320
MslI	CAYNNNNRTG	1 cut(s)	329
MspA1I	CMGCKG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	227
NcoI	CCATGG	1 cut(s)	292
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	2 cut(s)	165, 169
NlaIII	CATG	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	7, 154, 229
Ple19I	CGATCG	1 cut(s)	168
Ppu21I	YACGTR	1 cut(s)	341
PsiI	TTATAA	1 cut(s)	128
Psp1406I	AACGTT	1 cut(s)	114
PspPI	GGNCC	1 cut(s)	380
PvuI	CGATCG	1 cut(s)	168
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	329
SaqAI	TTAA	2 cut(s)	111, 320
SatI	GCNGC	3 cut(s)	6, 153, 228
Sau3AI	GATC	2 cut(s)	165, 169
Sau96I	GGNCC	1 cut(s)	380
SetI	ASST	7 cut(s)	35, 91, 117, 126, 157, 343, 385
SfaNI	GCATC	1 cut(s)	218
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	329
SmlI	CTYRAG	1 cut(s)	395
SmoI	CTYRAG	1 cut(s)	395
SnaBI	TACGTA	1 cut(s)	341
Sse9I	AATT	1 cut(s)	69
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	102
StyI	CCWWGG	2 cut(s)	292, 383
TaaI	ACNGT	1 cut(s)	414
TaiI	ACGT	2 cut(s)	117, 343
TaqI	TCGA	1 cut(s)	168
TasI	AATT	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	306
Tru1I	TTAA	2 cut(s)	111, 320
Tru9I	TTAA	2 cut(s)	111, 320
TseI	GCWGC	3 cut(s)	5, 152, 227
VpaK11BI	GGWCC	1 cut(s)	380
XbaI	TCTAGA	1 cut(s)	101
XcmI	CCANNNNNNNNNTGG	1 cut(s)	299
XspI	CTAG	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.