pycom07g01230

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
947456 .. 947826
371 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 318 bp
ATGAAAGAGAGCAGTAACAGCATGAAGTCTGGAGAGCGTGCTCTGTTACATGTAGGCTGGGAGTTAGGGTATGGGAAAGAAGGGAGCTGTTCTTTTCCGAATGTTCCACCATTGACAGATATATCATATGAAGTTGAGGTTATTGGATTTGACGAAACCAAAGAAGTAAGTTGCCAATTGAAGTTACCAAGTAGTTACCAATTGAAGTTTCAGAATCTCTTTTCCAGGAGGAAAGCTCGTAGTGACCTGACTGTGGAGGAAAGGATTGGAGCAGCAGATAGAAGAAAGATGGATGGAAATGCTTTTGTGTATGAGTGA

Protein Analysis

106

Amino Acids

11.89

Weight (kDa)

5.89

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 1 cut(s) 253
AflIII ACRYGT 1 cut(s) 49
AgsI TTSAA 2 cut(s) 181, 205
AjnI CCWGG 1 cut(s) 224
AjuI GAANNNNNNNTTGG 2 cut(s) 192, 224
AluBI AGCT 2 cut(s) 87, 236
AluI AGCT 2 cut(s) 87, 236
Alw21I GWGCWC 1 cut(s) 43
ApeKI GCWGC 1 cut(s) 272
Bbv12I GWGCWC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 284
BccI CCATC 2 cut(s) 283, 287
BciT130I CCWGG 1 cut(s) 226
BisI GCNGC 1 cut(s) 273
BlsI GCNGC 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 226
BmrFI CCNGG 1 cut(s) 226
BplI GAGNNNNNCTC 2 cut(s) 220, 252
BpmI CTGGAG 1 cut(s) 51
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 253
BseBI CCWGG 1 cut(s) 226
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 253
BseXI GCAGC 1 cut(s) 284
BseYI CCCAGC 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 253
Bsp1286I GDGCHC 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 226
Bst4CI ACNGT 1 cut(s) 253
BstC8I GCNNGC 1 cut(s) 39
BstF5I GGATG 1 cut(s) 298
BstMWI GCNNNNNNNGC 1 cut(s) 18
BstNI CCWGG 1 cut(s) 226
BstNSI RCATGY 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 224
BstV1I GCAGC 1 cut(s) 284
BtsCI GGATG 1 cut(s) 298
Cac8I GCNNGC 1 cut(s) 39
CviAII CATG 2 cut(s) 22, 50
CviJI RGCY 3 cut(s) 57, 87, 236
CviKI_1 RGCY 3 cut(s) 57, 87, 236
EcoRII CCWGG 1 cut(s) 224
FaeI CATG 2 cut(s) 25, 53
FaiI YATR 7 cut(s) 23, 51, 72, 122, 127, 129, 312
FatI CATG 2 cut(s) 21, 49
FauNDI CATATG 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 273
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 1 cut(s) 273
GluI GCNGC 1 cut(s) 273
GsaI CCCAGC 1 cut(s) 61
GsuI CTGGAG 1 cut(s) 51
Hin1II CATG 2 cut(s) 25, 53
HinfI GANTC 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 99, 213
Hpy188III TCNNGA 1 cut(s) 30
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 1 cut(s) 253
HpyF10VI GCNNNNNNNGC 1 cut(s) 18
Hsp92II CATG 2 cut(s) 25, 53
LmnI GCTCC 2 cut(s) 84, 269
LpnPI CCDG 5 cut(s) 15, 43, 211, 238, 260
Lsp1109I GCAGC 1 cut(s) 284
MaeIII GTNAC 5 cut(s) 14, 45, 183, 194, 242
MboII GAAGA 1 cut(s) 294
MfeI CAATTG 2 cut(s) 176, 200
MhlI GDGCHC 1 cut(s) 43
MluCI AATT 2 cut(s) 176, 200
MnlI CCTC 3 cut(s) 130, 222, 250
MspR9I CCNGG 1 cut(s) 226
MunI CAATTG 2 cut(s) 176, 200
MvaI CCWGG 1 cut(s) 226
MwoI GCNNNNNNNGC 1 cut(s) 18
NdeI CATATG 1 cut(s) 127
NlaIII CATG 2 cut(s) 25, 53
NmuCI GTSAC 1 cut(s) 242
NspI RCATGY 1 cut(s) 53
PciI ACATGT 1 cut(s) 49
PfeI GAWTC 1 cut(s) 214
PfoI TCCNGGA 1 cut(s) 224
PkrI GCNGC 1 cut(s) 274
PscI ACATGT 1 cut(s) 49
Psp6I CCWGG 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 57
PspGI CCWGG 1 cut(s) 224
SatI GCNGC 1 cut(s) 273
ScrFI CCNGG 1 cut(s) 226
SduI GDGCHC 1 cut(s) 43
SetI ASST 4 cut(s) 89, 141, 238, 249
Sse9I AATT 2 cut(s) 176, 200
StyD4I CCNGG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 253
TasI AATT 2 cut(s) 176, 200
TfiI GAWTC 1 cut(s) 214
TseFI GTSAC 1 cut(s) 242
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 1 cut(s) 242
TspDTI ATGAA 3 cut(s) 17, 38, 144
XceI RCATGY 1 cut(s) 53
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.