Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

2208122 .. 2208907

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGCCAGGAATGACAGGCTATGATCTCCTCAGAAAGATTAAGGTAAACCACAGGACCCTAAATCTTCATCAAAGCATAGGATTTATATTACAATTACAATCCAGATATTTTAGATCAAAATTTTGCTATCCTCCCGCTCTATGCTTGGAGGAAGGAGCACAAGAGTTTTTCCTTAAACCAGTACAATTATCCGATGTGAACAAGCTTCGACCTCACATGTTGAAGGGCAGAAGCAGTGTGGACATGGAAGACCAACCCAACTTCAACAAGAAAGGGCATGGAACTAACACAAGCAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

100

Amino Acids

11.38

Weight (kDa)

9.64

Isoelectric Point (pI)

59.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	137
AciI	CCGC	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	119
AfaI	GTAC	1 cut(s)	183
AflIII	ACRYGT	1 cut(s)	216
AgsI	TTSAA	2 cut(s)	223, 265
AjnI	CCWGG	1 cut(s)	4
AluBI	AGCT	1 cut(s)	205
AluI	AGCT	1 cut(s)	205
Alw21I	GWGCWC	1 cut(s)	160
ApoI	RAATTY	1 cut(s)	119
AspS9I	GGNCC	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	54
BbsI	GAAGAC	1 cut(s)	255
Bbv12I	GWGCWC	1 cut(s)	160
BciT130I	CCWGG	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	54
BmgT120I	GGNCC	1 cut(s)	54
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	1 cut(s)	6
BpiI	GAAGAC	1 cut(s)	255
Bse1I	ACTGG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	6
BseMII	CTCAG	1 cut(s)	43
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	17
BsiHKAI	GWGCWC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	160
Bsp143I	GATC	2 cut(s)	22, 113
BspACI	CCGC	1 cut(s)	135
BspCNI	CTCAG	1 cut(s)	42
BspLI	GGNNCC	1 cut(s)	56
BsrBI	CCGCTC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	179
BssMI	GATC	2 cut(s)	22, 113
Bst2UI	CCWGG	1 cut(s)	6
BstDEI	CTNAG	1 cut(s)	29
BstKTI	GATC	2 cut(s)	25, 116
BstMBI	GATC	2 cut(s)	22, 113
BstNI	CCWGG	1 cut(s)	6
BstNSI	RCATGY	1 cut(s)	220
BstSCI	CCNGG	1 cut(s)	4
BstV2I	GAAGAC	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	1 cut(s)	241
Cfr13I	GGNCC	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	182
CviAII	CATG	3 cut(s)	217, 244, 278
CviJI	RGCY	2 cut(s)	18, 205
CviKI_1	RGCY	2 cut(s)	18, 205
CviQI	GTAC	1 cut(s)	182
DdeI	CTNAG	1 cut(s)	29
DpnI	GATC	2 cut(s)	24, 115
DpnII	GATC	2 cut(s)	22, 113
Eco47I	GGWCC	1 cut(s)	54
EcoO109I	RGGNCCY	1 cut(s)	54
EcoRII	CCWGG	1 cut(s)	4
FaeI	CATG	3 cut(s)	220, 247, 281
FaiI	YATR	7 cut(s)	21, 77, 86, 142, 218, 245, 279
FatI	CATG	3 cut(s)	216, 243, 277
FauI	CCCGC	1 cut(s)	142
Hin1II	CATG	3 cut(s)	220, 247, 281
HindIII	AAGCTT	1 cut(s)	203
Hpy166II	GTNNAC	3 cut(s)	46, 199, 241
Hpy188I	TCNGA	2 cut(s)	32, 193
Hpy188III	TCNNGA	1 cut(s)	102
Hpy8I	GTNNAC	3 cut(s)	46, 199, 241
HpyAV	CCTTC	2 cut(s)	146, 217
HpyF3I	CTNAG	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	220, 247, 281
Kzo9I	GATC	2 cut(s)	22, 113
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	4 cut(s)	18, 37, 115, 192
MalI	GATC	2 cut(s)	24, 115
MbiI	CCGCTC	1 cut(s)	137
MboI	GATC	2 cut(s)	22, 113
MboII	GAAGA	2 cut(s)	56, 260
MhlI	GDGCHC	1 cut(s)	160
MluCI	AATT	3 cut(s)	92, 119, 185
MnlI	CCTC	4 cut(s)	38, 141, 142, 222
MseI	TTAA	2 cut(s)	39, 174
MspR9I	CCNGG	1 cut(s)	6
MvaI	CCWGG	1 cut(s)	6
NdeII	GATC	2 cut(s)	22, 113
NlaIII	CATG	3 cut(s)	220, 247, 281
NlaIV	GGNNCC	1 cut(s)	56
NspI	RCATGY	1 cut(s)	220
PciI	ACATGT	1 cut(s)	216
PpuMI	RGGWCCY	1 cut(s)	54
PscI	ACATGT	1 cut(s)	216
Psp5II	RGGWCCY	1 cut(s)	54
Psp6I	CCWGG	1 cut(s)	4
PspGI	CCWGG	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	54
PspPPI	RGGWCCY	1 cut(s)	54
RsaI	GTAC	1 cut(s)	183
RsaNI	GTAC	1 cut(s)	182
SaqAI	TTAA	2 cut(s)	39, 174
Sau3AI	GATC	2 cut(s)	22, 113
Sau96I	GGNCC	1 cut(s)	54
ScrFI	CCNGG	1 cut(s)	6
SduI	GDGCHC	1 cut(s)	160
SetI	ASST	3 cut(s)	45, 207, 214
SinI	GGWCC	1 cut(s)	54
Sse9I	AATT	3 cut(s)	92, 119, 185
SsiI	CCGC	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	4
TaqI	TCGA	1 cut(s)	208
TasI	AATT	3 cut(s)	92, 119, 185
TatI	WGTACW	1 cut(s)	181
Tru1I	TTAA	2 cut(s)	39, 174
Tru9I	TTAA	2 cut(s)	39, 174
TscAI	CASTG	1 cut(s)	241
TspDTI	ATGAA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	54
XapI	RAATTY	1 cut(s)	119
XceI	RCATGY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.