DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RNA_pol_Rpb1_1 | PF04997 | 43 - 106 | 1.4e-09 | RNA polymerase Rpb1, domain 1 |
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No orthologs found for this gene in the current database.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 274 |
| AcsI | RAATTY | 2 cut(s) | 53, 78 |
| AfaI | GTAC | 2 cut(s) | 85, 237 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 143 |
| AgsI | TTSAA | 3 cut(s) | 271, 298, 307 |
| AjnI | CCWGG | 1 cut(s) | 193 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 198, 230 |
| AluBI | AGCT | 2 cut(s) | 285, 365 |
| AluI | AGCT | 2 cut(s) | 285, 365 |
| Alw26I | GTCTC | 1 cut(s) | 429 |
| AoxI | GGCC | 2 cut(s) | 9, 145 |
| ApeKI | GCWGC | 1 cut(s) | 414 |
| ApoI | RAATTY | 2 cut(s) | 53, 78 |
| BbvI | GCAGC | 1 cut(s) | 401 |
| BccI | CCATC | 1 cut(s) | 26 |
| BciT130I | CCWGG | 1 cut(s) | 195 |
| BcoDI | GTCTC | 1 cut(s) | 429 |
| BisI | GCNGC | 1 cut(s) | 415 |
| BlpI | GCTNAGC | 2 cut(s) | 281, 346 |
| BlsI | GCNGC | 1 cut(s) | 416 |
| Bme1390I | CCNGG | 1 cut(s) | 195 |
| BmrFI | CCNGG | 1 cut(s) | 195 |
| BmsI | GCATC | 3 cut(s) | 98, 267, 401 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 28 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 281, 346 |
| BpuEI | CTTGAG | 1 cut(s) | 176 |
| BsaJI | CCNNGG | 2 cut(s) | 142, 194 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 143 |
| Bse1I | ACTGG | 1 cut(s) | 233 |
| BseBI | CCWGG | 1 cut(s) | 195 |
| BseDI | CCNNGG | 2 cut(s) | 142, 194 |
| BseGI | GGATG | 3 cut(s) | 247, 282, 416 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 143 |
| BseMII | CTCAG | 1 cut(s) | 272 |
| BseNI | ACTGG | 1 cut(s) | 233 |
| BseRI | GAGGAG | 1 cut(s) | 20 |
| BseXI | GCAGC | 1 cut(s) | 401 |
| BsgI | GTGCAG | 1 cut(s) | 400 |
| BshFI | GGCC | 2 cut(s) | 11, 147 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 143 |
| BsmAI | GTCTC | 1 cut(s) | 429 |
| BsnI | GGCC | 2 cut(s) | 11, 147 |
| Bsp1407I | TGTACA | 1 cut(s) | 83 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 281, 346 |
| BspACI | CCGC | 1 cut(s) | 274 |
| BspANI | GGCC | 2 cut(s) | 11, 147 |
| BspCNI | CTCAG | 1 cut(s) | 273 |
| BsrGI | TGTACA | 1 cut(s) | 83 |
| BsrI | ACTGG | 1 cut(s) | 233 |
| BssECI | CCNNGG | 2 cut(s) | 142, 194 |
| BssT1I | CCWWGG | 1 cut(s) | 142 |
| Bst2UI | CCWGG | 1 cut(s) | 195 |
| BstAUI | TGTACA | 1 cut(s) | 83 |
| BstC8I | GCNNGC | 2 cut(s) | 149, 343 |
| BstDEI | CTNAG | 2 cut(s) | 281, 346 |
| BstF5I | GGATG | 3 cut(s) | 247, 282, 416 |
| BstMAI | GTCTC | 1 cut(s) | 429 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 111, 291, 300, 347 |
| BstNI | CCWGG | 1 cut(s) | 195 |
| BstSCI | CCNGG | 1 cut(s) | 193 |
| BstV1I | GCAGC | 1 cut(s) | 401 |
| BsuRI | GGCC | 2 cut(s) | 11, 147 |
| BtsCI | GGATG | 3 cut(s) | 247, 282, 416 |
| Cac8I | GCNNGC | 2 cut(s) | 149, 343 |
| Csp6I | GTAC | 2 cut(s) | 84, 236 |
| CviAII | CATG | 3 cut(s) | 116, 257, 369 |
| CviJI | RGCY | 6 cut(s) | 11, 114, 147, 285, 345, 365 |
| CviKI_1 | RGCY | 6 cut(s) | 11, 114, 147, 285, 345, 365 |
| CviQI | GTAC | 2 cut(s) | 84, 236 |
| DdeI | CTNAG | 2 cut(s) | 281, 346 |
| Eco130I | CCWWGG | 1 cut(s) | 142 |
| Eco147I | AGGCCT | 1 cut(s) | 11 |
| EcoRII | CCWGG | 1 cut(s) | 193 |
| EcoT14I | CCWWGG | 1 cut(s) | 142 |
| ErhI | CCWWGG | 1 cut(s) | 142 |
| FaeI | CATG | 3 cut(s) | 119, 260, 372 |
| FaiI | YATR | 6 cut(s) | 117, 222, 258, 370, 388, 405 |
| FatI | CATG | 3 cut(s) | 115, 256, 368 |
| Fnu4HI | GCNGC | 1 cut(s) | 415 |
| FokI | GGATG | 3 cut(s) | 234, 289, 423 |
| Fsp4HI | GCNGC | 1 cut(s) | 415 |
| GluI | GCNGC | 1 cut(s) | 415 |
| HaeIII | GGCC | 2 cut(s) | 11, 147 |
| Hin1II | CATG | 3 cut(s) | 119, 260, 372 |
| HincII | GTYRAC | 1 cut(s) | 125 |
| HindII | GTYRAC | 1 cut(s) | 125 |
| HinfI | GANTC | 2 cut(s) | 48, 173 |
| Hpy166II | GTNNAC | 1 cut(s) | 125 |
| Hpy188I | TCNGA | 2 cut(s) | 164, 190 |
| Hpy188III | TCNNGA | 1 cut(s) | 74 |
| Hpy8I | GTNNAC | 1 cut(s) | 125 |
| HpyAV | CCTTC | 3 cut(s) | 148, 200, 373 |
| HpyCH4V | TGCA | 2 cut(s) | 119, 417 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 111, 291, 300, 347 |
| HpyF3I | CTNAG | 2 cut(s) | 281, 346 |
| Hsp92II | CATG | 3 cut(s) | 119, 260, 372 |
| LpnPI | CCDG | 5 cut(s) | 161, 180, 207, 246, 327 |
| Lsp1109I | GCAGC | 1 cut(s) | 401 |
| LweI | GCATC | 3 cut(s) | 98, 267, 401 |
| MaeIII | GTNAC | 1 cut(s) | 228 |
| MluCI | AATT | 3 cut(s) | 53, 78, 266 |
| MmeI | TCCRAC | 3 cut(s) | 25, 156, 353 |
| MnlI | CCTC | 3 cut(s) | 22, 28, 402 |
| MspR9I | CCNGG | 1 cut(s) | 195 |
| MvaI | CCWGG | 1 cut(s) | 195 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 111, 291, 300, 347 |
| NlaIII | CATG | 3 cut(s) | 119, 260, 372 |
| PceI | AGGCCT | 1 cut(s) | 11 |
| PfeI | GAWTC | 2 cut(s) | 48, 173 |
| PkrI | GCNGC | 1 cut(s) | 416 |
| Psp6I | CCWGG | 1 cut(s) | 193 |
| PspGI | CCWGG | 1 cut(s) | 193 |
| RsaI | GTAC | 2 cut(s) | 85, 237 |
| RsaNI | GTAC | 2 cut(s) | 84, 236 |
| SatI | GCNGC | 1 cut(s) | 415 |
| ScrFI | CCNGG | 1 cut(s) | 195 |
| SetI | ASST | 6 cut(s) | 20, 196, 211, 287, 367, 384 |
| SfaNI | GCATC | 3 cut(s) | 98, 267, 401 |
| SmlI | CTYRAG | 1 cut(s) | 155 |
| SmoI | CTYRAG | 1 cut(s) | 155 |
| Sse9I | AATT | 3 cut(s) | 53, 78, 266 |
| SseBI | AGGCCT | 1 cut(s) | 11 |
| SsiI | CCGC | 1 cut(s) | 274 |
| SspI | AATATT | 2 cut(s) | 25, 243 |
| StuI | AGGCCT | 1 cut(s) | 11 |
| StyD4I | CCNGG | 1 cut(s) | 193 |
| StyI | CCWWGG | 1 cut(s) | 142 |
| TaqI | TCGA | 1 cut(s) | 14 |
| TasI | AATT | 3 cut(s) | 53, 78, 266 |
| TatI | WGTACW | 1 cut(s) | 83 |
| TfiI | GAWTC | 2 cut(s) | 48, 173 |
| TseI | GCWGC | 1 cut(s) | 414 |
| TspDTI | ATGAA | 3 cut(s) | 236, 326, 357 |
| XapI | RAATTY | 2 cut(s) | 53, 78 |