pycom07g02970

Squalene monooxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
2462368 .. 2464034
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1137 bp
ATGAGTCCATTGATGCTCAGAAAGTGTTTGGTTATGCTATTTACAAAAATGACAATGACACGAAACTGTCTTATCCCTAGGAAACATATAGTTTCAGATATCGTCGGAAGAAGCTTCCACAACAGGCGTTTCATCCAAAGAATGCATGAAAGGGCAAATGTGAAATTGGAACAAGGAACTGTGACAACTCTACTTGAAGAAAAAAACACCATCAAAGGAGTGATGTACAAGAACAAGGCTGGAGAGGAGATGAGAACATATGCTCCTCTTACAATAGTATGCGATGGCTGCTTTTCAAATCTTCGCCGCTCCATCTCTACTCCAAATCATGGAAAATGTTTGCTCTTCCAGGAGAACAACAGGAGGACTAGCTTTGTATTAATACTGCAGATTGAAAATCCATCATGCTTCGTCGGTTTGATCTTGGAGAACTGTGAGCTTCCTCATGCAAACCATGGACATAACAATGCAAACAAAAGCATGCCGGCTGCTCCCCGACCCACTTCTGGTGCAATTTTATTGGGGGACGCATTCAACATGAGACATCCTTTAACCGGAGGAGGAATGACAGTCGCTCTTTCCGACATTGTTCTTCTAAGGGATCTTCTGAGACCCCTGACTGATTTCAACGATGCACCTCTGTTGTGTGAGTATCTCGAATCATTCTACACACTCCGCAAGCCAGTGTCATCTACCATAAACACATTAGCTGGTGCCCTTTACAAGGTGTTTTGTGCATCACCTGACCCTGCAAGACAAGAAATGCGTGAAGCATGTTTTGATTATTTGAGCCTTGGAGGCGTCTGTTCAAATGGACCAATATCTCTACTCTCTTGTCTTAACACTCGTCCAATCAGCCTGTTTCTCCATTTCTTTGCTATGGCTGTCTATGAAGTCGGTTTCTTAATGATTCCATTCCCTACACCGAAAAGCTTGTGGTTGGGGGCTAGATTGACCTTGGTATGTTTACTCATTCAGCCAGTACTTTCTCATCAGCAAAGTGCATTAGGAATCATATTCCCAATTATTAAAGACGAAGGAGTTAGACAGATGTTCTTTCCTGCAACAATGCCAGAATATTACAGAGTTCCTCCTGTTCATGGAAAAATCGAAACAAGTATGAAGCATATATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

379

Amino Acids

42.45

Weight (kDa)

9.13

Isoelectric Point (pI)

56.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SE PF08491 157 - 313 1.6e-61 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 713
AccB7I CCANNNNNTGG 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 309
AciI CCGC 2 cut(s) 307, 676
AclWI GGATC 1 cut(s) 609
AcyI GRCGYC 1 cut(s) 801
AfaI GTAC 2 cut(s) 227, 984
AfiI CCNNNNNNNGG 5 cut(s) 329, 506, 554, 724, 1100
AgsI TTSAA 6 cut(s) 197, 297, 395, 535, 628, 810
AjnI CCWGG 1 cut(s) 348
AloI GAACNNNNNNTCC 2 cut(s) 247, 279
AluBI AGCT 5 cut(s) 114, 372, 439, 710, 933
AluI AGCT 5 cut(s) 114, 372, 439, 710, 933
Alw26I GTCTC 2 cut(s) 535, 604
AlwI GGATC 1 cut(s) 609
ApeKI GCWGC 2 cut(s) 288, 488
AseI ATTAAT 1 cut(s) 380
AspA2I CCTAGG 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 815
AsuHPI GGTGA 1 cut(s) 732
AvaII GGWCC 1 cut(s) 815
AvrII CCTAGG 1 cut(s) 77
BaeGI GKGCMC 1 cut(s) 718
BanI GGYRCC 1 cut(s) 713
BbvI GCAGC 2 cut(s) 275, 475
BccI CCATC 4 cut(s) 218, 278, 320, 409
BciT130I CCWGG 1 cut(s) 350
BcoDI GTCTC 2 cut(s) 535, 604
BfaI CTAG 3 cut(s) 78, 369, 948
BfmI CTRYAG 1 cut(s) 386
BglI GCCNNNNNGGC 1 cut(s) 798
BisI GCNGC 3 cut(s) 289, 307, 489
BlnI CCTAGG 1 cut(s) 77
BlsI GCNGC 3 cut(s) 290, 308, 490
BmcAI AGTACT 1 cut(s) 984
Bme1390I CCNGG 1 cut(s) 350
Bme18I GGWCC 1 cut(s) 815
BmgT120I GGNCC 1 cut(s) 815
BmiI GGNNCC 1 cut(s) 715
BmrFI CCNGG 1 cut(s) 350
BmsI GCATC 3 cut(s) 3, 622, 746
BpmI CTGGAG 1 cut(s) 261
BsaHI GRCGYC 1 cut(s) 801
BsaI GGTCTC 1 cut(s) 604
BsaJI CCNNGG 4 cut(s) 77, 454, 793, 957
BsaWI WCCGGW 1 cut(s) 554
BsaXI ACNNNNNCTCC 2 cut(s) 247, 277
Bsc4I CCNNNNNNNGG 5 cut(s) 329, 506, 554, 724, 1100
Bse118I RCCGGY 1 cut(s) 484
Bse1I ACTGG 2 cut(s) 683, 980
BseBI CCWGG 1 cut(s) 350
BseDI CCNNGG 4 cut(s) 77, 454, 793, 957
BseGI GGATG 2 cut(s) 132, 544
BseLI CCNNNNNNNGG 5 cut(s) 329, 506, 554, 724, 1100
BseMII CTCAG 2 cut(s) 31, 599
BseNI ACTGG 2 cut(s) 683, 980
BseRI GAGGAG 3 cut(s) 255, 260, 573
BseSI GKGCMC 1 cut(s) 718
BseXI GCAGC 2 cut(s) 275, 475
BshNI GGYRCC 1 cut(s) 713
BsiSI CCGG 2 cut(s) 485, 555
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 5 cut(s) 329, 506, 554, 724, 1100
BsmAI GTCTC 2 cut(s) 535, 604
BsmFI GGGAC 1 cut(s) 539
BsmI GAATGC 2 cut(s) 147, 530
Bso31I GGTCTC 1 cut(s) 604
Bsp1286I GDGCHC 1 cut(s) 718
Bsp1407I TGTACA 1 cut(s) 225
Bsp143I GATC 2 cut(s) 420, 601
Bsp19I CCATGG 1 cut(s) 454
BspACI CCGC 2 cut(s) 307, 676
BspCNI CTCAG 2 cut(s) 30, 600
BspLI GGNNCC 1 cut(s) 715
BspMAI CTGCAG 1 cut(s) 390
BspPI GGATC 1 cut(s) 609
BspQI GCTCTTC 1 cut(s) 350
BspT107I GGYRCC 1 cut(s) 713
BspTNI GGTCTC 1 cut(s) 604
BsrBI CCGCTC 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 484
BsrGI TGTACA 1 cut(s) 225
BsrI ACTGG 2 cut(s) 683, 980
BssAI RCCGGY 1 cut(s) 484
BssECI CCNNGG 4 cut(s) 77, 454, 793, 957
BssMI GATC 2 cut(s) 420, 601
BssNI GRCGYC 1 cut(s) 801
BssT1I CCWWGG 4 cut(s) 77, 454, 793, 957
Bst2UI CCWGG 1 cut(s) 350
Bst4CI ACNGT 4 cut(s) 68, 181, 434, 571
Bst6I CTCTTC 1 cut(s) 350
BstACI GRCGYC 1 cut(s) 801
BstAUI TGTACA 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 482, 486, 680
BstDEI CTNAG 3 cut(s) 17, 596, 608
BstDSI CCRYGG 1 cut(s) 454
BstENI CCTNNNNNAGG 1 cut(s) 722
BstF5I GGATG 2 cut(s) 132, 544
BstKTI GATC 2 cut(s) 423, 604
BstMAI GTCTC 2 cut(s) 535, 604
BstMBI GATC 2 cut(s) 420, 601
BstMWI GCNNNNNNNGC 2 cut(s) 288, 798
BstNI CCWGG 1 cut(s) 350
BstNSI RCATGY 2 cut(s) 484, 777
BstSCI CCNGG 1 cut(s) 348
BstSFI CTRYAG 1 cut(s) 386
BstSLI GKGCMC 1 cut(s) 718
BstV1I GCAGC 2 cut(s) 275, 475
BstX2I RGATCY 1 cut(s) 601
BstYI RGATCY 1 cut(s) 601
BtgI CCRYGG 1 cut(s) 454
BtgZI GCGATG 1 cut(s) 297
BtsCI GGATG 2 cut(s) 132, 544
BtsIMutI CAGTG 1 cut(s) 690
Cac8I GCNNGC 3 cut(s) 482, 486, 680
Cfr10I RCCGGY 1 cut(s) 484
Cfr13I GGNCC 1 cut(s) 815
CseI GACGC 2 cut(s) 536, 790
Csp6I GTAC 2 cut(s) 226, 983
CviAII CATG 9 cut(s) 146, 329, 405, 446, 455, 481, 538, 774, 1100
CviQI GTAC 2 cut(s) 226, 983
DdeI CTNAG 3 cut(s) 17, 596, 608
DpnI GATC 2 cut(s) 422, 603
DpnII GATC 2 cut(s) 420, 601
Eam1104I CTCTTC 1 cut(s) 350
EarI CTCTTC 1 cut(s) 350
Eco130I CCWWGG 4 cut(s) 77, 454, 793, 957
Eco31I GGTCTC 1 cut(s) 604
Eco32I GATATC 1 cut(s) 100
Eco47I GGWCC 1 cut(s) 815
EcoNI CCTNNNNNAGG 1 cut(s) 722
EcoRII CCWGG 1 cut(s) 348
EcoRV GATATC 1 cut(s) 100
EcoT14I CCWWGG 4 cut(s) 77, 454, 793, 957
EcoT22I ATGCAT 1 cut(s) 147
ErhI CCWWGG 4 cut(s) 77, 454, 793, 957
FaeI CATG 9 cut(s) 149, 332, 408, 449, 458, 484, 541, 777, 1103
FaqI GGGAC 1 cut(s) 539
FatI CATG 9 cut(s) 145, 328, 404, 445, 454, 480, 537, 773, 1099
FauNDI CATATG 1 cut(s) 259
Fnu4HI GCNGC 3 cut(s) 289, 307, 489
FokI GGATG 2 cut(s) 119, 531
Fsp4HI GCNGC 3 cut(s) 289, 307, 489
FspBI CTAG 3 cut(s) 78, 369, 948
GluI GCNGC 3 cut(s) 289, 307, 489
GsuI CTGGAG 1 cut(s) 261
HapII CCGG 2 cut(s) 485, 555
HgaI GACGC 2 cut(s) 536, 790
Hin1I GRCGYC 1 cut(s) 801
Hin1II CATG 9 cut(s) 149, 332, 408, 449, 458, 484, 541, 777, 1103
HindIII AAGCTT 2 cut(s) 112, 931
HinfI GANTC 4 cut(s) 4, 659, 910, 1011
HpaII CCGG 2 cut(s) 485, 555
HphI GGTGA 1 cut(s) 732
Hpy166II GTNNAC 1 cut(s) 968
Hpy188I TCNGA 5 cut(s) 20, 97, 107, 583, 609
Hpy188III TCNNGA 1 cut(s) 656
Hpy8I GTNNAC 1 cut(s) 968
Hpy99I CGWCG 2 cut(s) 107, 416
HpyAV CCTTC 1 cut(s) 1031
HpyCH4III ACNGT 4 cut(s) 68, 181, 434, 571
HpyF10VI GCNNNNNNNGC 2 cut(s) 288, 798
HpyF3I CTNAG 3 cut(s) 17, 596, 608
Hsp92I GRCGYC 1 cut(s) 801
Hsp92II CATG 9 cut(s) 149, 332, 408, 449, 458, 484, 541, 777, 1103
KroI GCCGGC 1 cut(s) 484
KroNI GCCGGC 1 cut(s) 486
Kzo9I GATC 2 cut(s) 420, 601
LguI GCTCTTC 1 cut(s) 350
LmnI GCTCC 3 cut(s) 268, 314, 496
Lsp1109I GCAGC 2 cut(s) 275, 475
LweI GCATC 3 cut(s) 3, 622, 746
MaeI CTAG 3 cut(s) 78, 369, 948
MaeIII GTNAC 1 cut(s) 181
MalI GATC 2 cut(s) 422, 603
MbiI CCGCTC 1 cut(s) 309
MboI GATC 2 cut(s) 420, 601
MboII GAAGA 6 cut(s) 120, 209, 293, 337, 584, 596
MflI RGATCY 1 cut(s) 601
MhlI GDGCHC 1 cut(s) 718
MluCI AATT 3 cut(s) 164, 513, 1023
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 2 cut(s) 85, 606
MnlI CCTC 9 cut(s) 238, 276, 357, 453, 551, 554, 648, 791, 1101
Mph1103I ATGCAT 1 cut(s) 147
MroNI GCCGGC 1 cut(s) 484
MseI TTAA 6 cut(s) 380, 551, 840, 905, 1029, 1135
MslI CAYNNNNRTG 1 cut(s) 465
MspI CCGG 2 cut(s) 485, 555
MspR9I CCNGG 1 cut(s) 350
Mva1269I GAATGC 2 cut(s) 147, 530
MvaI CCWGG 1 cut(s) 350
MwoI GCNNNNNNNGC 2 cut(s) 288, 798
NaeI GCCGGC 1 cut(s) 486
NcoI CCATGG 1 cut(s) 454
NdeI CATATG 1 cut(s) 259
NdeII GATC 2 cut(s) 420, 601
NgoMIV GCCGGC 1 cut(s) 484
NlaIII CATG 9 cut(s) 149, 332, 408, 449, 458, 484, 541, 777, 1103
NlaIV GGNNCC 1 cut(s) 715
NmuCI GTSAC 1 cut(s) 181
NsiI ATGCAT 1 cut(s) 147
NspI RCATGY 2 cut(s) 484, 777
PaeI GCATGC 1 cut(s) 484
PciSI GCTCTTC 1 cut(s) 350
PcsI WCGNNNNNNNCGW 1 cut(s) 579
PctI GAATGC 2 cut(s) 147, 530
PdiI GCCGGC 1 cut(s) 486
PfeI GAWTC 3 cut(s) 659, 910, 1011
PflMI CCANNNNNTGG 1 cut(s) 329
PfoI TCCNGGA 1 cut(s) 348
PkrI GCNGC 3 cut(s) 290, 308, 490
PleI GAGTC 1 cut(s) 12
PpsI GAGTC 1 cut(s) 12
PshBI ATTAAT 1 cut(s) 380
Psp6I CCWGG 1 cut(s) 348
PspGI CCWGG 1 cut(s) 348
PspN4I GGNNCC 1 cut(s) 715
PspPI GGNCC 1 cut(s) 815
PstI CTGCAG 1 cut(s) 390
PsuI RGATCY 1 cut(s) 601
RsaI GTAC 2 cut(s) 227, 984
RsaNI GTAC 2 cut(s) 226, 983
RseI CAYNNNNRTG 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 350
SaqAI TTAA 6 cut(s) 380, 551, 840, 905, 1029, 1135
SatI GCNGC 3 cut(s) 289, 307, 489
Sau3AI GATC 2 cut(s) 420, 601
Sau96I GGNCC 1 cut(s) 815
ScaI AGTACT 1 cut(s) 984
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 1 cut(s) 350
SduI GDGCHC 1 cut(s) 718
SetI ASST 9 cut(s) 116, 374, 441, 640, 712, 729, 745, 935, 959
SfaNI GCATC 3 cut(s) 3, 622, 746
SfcI CTRYAG 1 cut(s) 386
SinI GGWCC 1 cut(s) 815
SmiMI CAYNNNNRTG 1 cut(s) 465
SphI GCATGC 1 cut(s) 484
Sse9I AATT 3 cut(s) 164, 513, 1023
SsiI CCGC 2 cut(s) 307, 676
SspI AATATT 1 cut(s) 1079
SspMI CTAG 3 cut(s) 78, 369, 948
StyD4I CCNGG 1 cut(s) 348
StyI CCWWGG 4 cut(s) 77, 454, 793, 957
TaaI ACNGT 4 cut(s) 68, 181, 434, 571
TaqI TCGA 2 cut(s) 657, 1110
TasI AATT 3 cut(s) 164, 513, 1023
TatI WGTACW 2 cut(s) 225, 982
TauI GCSGC 1 cut(s) 309
TfiI GAWTC 3 cut(s) 659, 910, 1011
Tru1I TTAA 6 cut(s) 380, 551, 840, 905, 1029, 1135
Tru9I TTAA 6 cut(s) 380, 551, 840, 905, 1029, 1135
TscAI CASTG 1 cut(s) 690
TseFI GTSAC 1 cut(s) 181
TseI GCWGC 2 cut(s) 288, 488
Tsp45I GTSAC 1 cut(s) 181
TspDTI ATGAA 5 cut(s) 121, 162, 906, 1088, 1136
TspRI CASTG 1 cut(s) 690
Van91I CCANNNNNTGG 1 cut(s) 329
VpaK11BI GGWCC 1 cut(s) 815
VspI ATTAAT 1 cut(s) 380
XagI CCTNNNNNAGG 1 cut(s) 722
XceI RCATGY 2 cut(s) 484, 777
XmaJI CCTAGG 1 cut(s) 77
XspI CTAG 3 cut(s) 78, 369, 948
ZrmI AGTACT 1 cut(s) 984
Zsp2I ATGCAT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.