Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2500037 .. 2500264

Gene Structure 228 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

ATGGGAATATATGATGCAATGAAATTGTGCAAGGCAGATGTTTCAACTGTTTGCCTGGGGCTTGCTGCTTCTATGGGGGCCTTTCTTCTTGCTGCTGGCACAAAAGGAAAGAGATTCTGCATGCCCAATGCAAGAGTGATCGATCCATCAACCCCTTGGAACTGCCGGGGGAAAAGTAAGTACTTGTTTTCTGCTTATTGTTGTGGATGTCCATATAAAATTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009368 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009536 GO:0009570 GO:0009579 GO:0009840 GO:0009941 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04112 ko04212 map04112 map04212

Pfam Domains

Protein Families

CLP_protease

Protein Analysis

76

Amino Acids

8.05

Weight (kDa)

9.23

Isoelectric Point (pI)

24.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CLP_protease	PF00574	1 - 47	4.8e-19	Clp protease

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	219
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	54
AlwI	GGATC	1 cut(s)	137
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	65, 92
ApoI	RAATTY	1 cut(s)	219
AspS9I	GGNCC	1 cut(s)	78
AsuC2I	CCSGG	1 cut(s)	167
BbvI	GCAGC	2 cut(s)	52, 79
BccI	CCATC	1 cut(s)	154
BciT130I	CCWGG	1 cut(s)	56
BcnI	CCSGG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	66, 93
BlsI	GCNGC	2 cut(s)	67, 94
BmcAI	AGTACT	1 cut(s)	182
Bme1390I	CCNGG	2 cut(s)	56, 167
BmgT120I	GGNCC	1 cut(s)	78
BmiI	GGNNCC	1 cut(s)	79
BmrFI	CCNGG	2 cut(s)	56, 167
BmsI	GCATC	1 cut(s)	4
BpuMI	CCSGG	1 cut(s)	167
Bsa29I	ATCGAT	1 cut(s)	141
BsaJI	CCNNGG	3 cut(s)	55, 155, 166
Bse3DI	GCAATG	1 cut(s)	24
BseBI	CCWGG	1 cut(s)	56
BseCI	ATCGAT	1 cut(s)	141
BseDI	CCNNGG	3 cut(s)	55, 155, 166
BseGI	GGATG	1 cut(s)	212
BseMI	GCAATG	1 cut(s)	24
BseXI	GCAGC	2 cut(s)	52, 79
BshFI	GGCC	1 cut(s)	80
BshVI	ATCGAT	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	166
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	138, 142
BspANI	GGCC	1 cut(s)	80
BspDI	ATCGAT	1 cut(s)	141
BspLI	GGNNCC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	24
BssECI	CCNNGG	3 cut(s)	55, 155, 166
BssMI	GATC	2 cut(s)	138, 142
BssT1I	CCWWGG	1 cut(s)	155
Bst2UI	CCWGG	1 cut(s)	56
Bst4CI	ACNGT	1 cut(s)	49
BstC8I	GCNNGC	3 cut(s)	63, 97, 122
BstF5I	GGATG	1 cut(s)	212
BstKTI	GATC	2 cut(s)	141, 145
BstMBI	GATC	2 cut(s)	138, 142
BstNI	CCWGG	1 cut(s)	56
BstNSI	RCATGY	1 cut(s)	124
BstSCI	CCNGG	2 cut(s)	54, 165
BstV1I	GCAGC	2 cut(s)	52, 79
Bsu15I	ATCGAT	1 cut(s)	141
BsuRI	GGCC	1 cut(s)	80
BsuTUI	ATCGAT	1 cut(s)	141
BtsCI	GGATG	1 cut(s)	212
Cac8I	GCNNGC	3 cut(s)	63, 97, 122
Cfr13I	GGNCC	1 cut(s)	78
ClaI	ATCGAT	1 cut(s)	141
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	2 cut(s)	61, 80
CviKI_1	RGCY	2 cut(s)	61, 80
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	2 cut(s)	140, 144
DpnII	GATC	2 cut(s)	138, 142
Eco130I	CCWWGG	1 cut(s)	155
EcoO109I	RGGNCCY	1 cut(s)	78
EcoRII	CCWGG	1 cut(s)	54
EcoT14I	CCWWGG	1 cut(s)	155
ErhI	CCWWGG	1 cut(s)	155
FaeI	CATG	1 cut(s)	124
FaiI	YATR	6 cut(s)	10, 12, 74, 122, 214, 216
FatI	CATG	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	66, 93
FokI	GGATG	1 cut(s)	219
Fsp4HI	GCNGC	2 cut(s)	66, 93
GluI	GCNGC	2 cut(s)	66, 93
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	1 cut(s)	166
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	1 cut(s)	114
HpaII	CCGG	1 cut(s)	166
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4V	TGCA	4 cut(s)	17, 30, 120, 131
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	2 cut(s)	138, 142
LpnPI	CCDG	4 cut(s)	41, 68, 81, 179
Lsp1109I	GCAGC	2 cut(s)	52, 79
LweI	GCATC	1 cut(s)	4
MalI	GATC	2 cut(s)	140, 144
MboI	GATC	2 cut(s)	138, 142
MboII	GAAGA	1 cut(s)	77
MluCI	AATT	2 cut(s)	23, 219
MseI	TTAA	1 cut(s)	226
MspI	CCGG	1 cut(s)	166
MspR9I	CCNGG	2 cut(s)	56, 167
MvaI	CCWGG	1 cut(s)	56
NciI	CCSGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	138, 142
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	79
NspI	RCATGY	1 cut(s)	124
PaeI	GCATGC	1 cut(s)	124
PfeI	GAWTC	1 cut(s)	114
PkrI	GCNGC	2 cut(s)	67, 94
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	79
PspPI	GGNCC	1 cut(s)	78
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
SaqAI	TTAA	1 cut(s)	226
SatI	GCNGC	2 cut(s)	66, 93
Sau3AI	GATC	2 cut(s)	138, 142
Sau96I	GGNCC	1 cut(s)	78
ScaI	AGTACT	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	56, 167
SfaNI	GCATC	1 cut(s)	4
SphI	GCATGC	1 cut(s)	124
Sse9I	AATT	2 cut(s)	23, 219
StyD4I	CCNGG	2 cut(s)	54, 165
StyI	CCWWGG	1 cut(s)	155
TaaI	ACNGT	1 cut(s)	49
TaqI	TCGA	1 cut(s)	141
TasI	AATT	2 cut(s)	23, 219
TatI	WGTACW	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	114
Tru1I	TTAA	1 cut(s)	226
Tru9I	TTAA	1 cut(s)	226
TseI	GCWGC	2 cut(s)	65, 92
TspDTI	ATGAA	1 cut(s)	35
XapI	RAATTY	1 cut(s)	219
XceI	RCATGY	1 cut(s)	124
XcmI	CCANNNNNNNNNTGG	1 cut(s)	153
ZrmI	AGTACT	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.