Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

2740597 .. 2741418

Gene Structure 822 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGTTGTGTCATGGTCAGAGTACTGGAGGATGTGCGCCGCCGTTATTGAGTAAACAACCTTCTAATCTTAATAACGGAAGTGCTAACCTAGAGGAAATGTCTGAGAATTCTGATTTTCAAGATGCGGACCAAGTTGATGTCAGAGAAGGCAAAGACGCTCATAATGTTGAAACAAGTGGTTCAGACACAAGCTTAACAAGAGGAAAAAATGCTGGTGATCAGATGGAAAACAGTGAATATCCAAAGTCGAGTGCACACATAAAAGAAAGTGGATATGGGGGAACCCCAGAGGATGAAAAGGTTGAAACTCTTCCTTCTGACGAAAAGCAGCGGCGAAAACGCAAACGAACAATAATGAATGATATGCAGGTGGAACTTGTTGAGAGGGCCCTATTGGATGAACCTGATATGCAGCGAAATGCAGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0006355 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060194 GO:0060195 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.61

Weight (kDa)

4.74

Isoelectric Point (pI)

45.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_NDX	PF24426	119 - 142	1.9e-08	NDX Homeobox-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	358
AciI	CCGC	3 cut(s)	38, 125, 331
AcsI	RAATTY	1 cut(s)	106
AfaI	GTAC	1 cut(s)	22
AgsI	TTSAA	3 cut(s)	119, 170, 305
AluBI	AGCT	1 cut(s)	192
AluI	AGCT	1 cut(s)	192
Alw21I	GWGCWC	1 cut(s)	256
Alw44I	GTGCAC	1 cut(s)	252
AoxI	GGCC	1 cut(s)	387
ApaI	GGGCCC	1 cut(s)	391
ApaLI	GTGCAC	1 cut(s)	252
ApeKI	GCWGC	3 cut(s)	328, 412, 422
ApoI	RAATTY	1 cut(s)	106
Asp700I	GAANNNNTTC	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	37
AspS9I	GGNCC	3 cut(s)	127, 387, 388
AsuHPI	GGTGA	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	127
BaeGI	GKGCMC	2 cut(s)	256, 391
BanII	GRGCYC	1 cut(s)	391
BarI	GAAGNNNNNNTAC	2 cut(s)	43, 75
Bbv12I	GWGCWC	1 cut(s)	256
BbvI	GCAGC	2 cut(s)	340, 424
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	1 cut(s)	25
BclI	TGATCA	1 cut(s)	217
BfaI	CTAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	358
BisI	GCNGC	5 cut(s)	38, 329, 332, 413, 423
BlsI	GCNGC	5 cut(s)	39, 330, 333, 414, 424
BmcAI	AGTACT	1 cut(s)	22
Bme18I	GGWCC	1 cut(s)	127
BmgT120I	GGNCC	3 cut(s)	127, 387, 388
BmiI	GGNNCC	2 cut(s)	283, 389
BmsI	GCATC	1 cut(s)	112
BpmI	CTGGAG	1 cut(s)	45
Bse1I	ACTGG	1 cut(s)	28
BseGI	GGATG	3 cut(s)	35, 298, 403
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	28
BseSI	GKGCMC	2 cut(s)	256, 391
BseXI	GCAGC	2 cut(s)	340, 424
BshFI	GGCC	1 cut(s)	389
BsiHKAI	GWGCWC	1 cut(s)	256
BsnI	GGCC	1 cut(s)	389
Bsp120I	GGGCCC	1 cut(s)	387
Bsp1286I	GDGCHC	2 cut(s)	256, 391
Bsp143I	GATC	1 cut(s)	217
BspACI	CCGC	3 cut(s)	38, 125, 331
BspANI	GGCC	1 cut(s)	389
BspCNI	CTCAG	1 cut(s)	94
BspLI	GGNNCC	2 cut(s)	283, 389
BspMI	ACCTGC	1 cut(s)	358
BsrI	ACTGG	1 cut(s)	28
BssMI	GATC	1 cut(s)	217
Bst4CI	ACNGT	1 cut(s)	233
Bst6I	CTCTTC	1 cut(s)	315
BstDEI	CTNAG	1 cut(s)	102
BstF5I	GGATG	3 cut(s)	35, 298, 403
BstHHI	GCGC	1 cut(s)	37
BstKTI	GATC	1 cut(s)	220
BstMBI	GATC	1 cut(s)	217
BstSLI	GKGCMC	2 cut(s)	256, 391
BstV1I	GCAGC	2 cut(s)	340, 424
BsuRI	GGCC	1 cut(s)	389
BtsCI	GGATG	3 cut(s)	35, 298, 403
BtsIMutI	CAGTG	1 cut(s)	238
BveI	ACCTGC	1 cut(s)	358
CfoI	GCGC	1 cut(s)	37
Cfr13I	GGNCC	3 cut(s)	127, 387, 388
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	21
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	3 cut(s)	192, 389, 425
CviKI_1	RGCY	3 cut(s)	192, 389, 425
CviQI	GTAC	1 cut(s)	21
DdeI	CTNAG	1 cut(s)	102
DpnI	GATC	1 cut(s)	219
DpnII	GATC	1 cut(s)	217
Eam1104I	CTCTTC	1 cut(s)	315
EarI	CTCTTC	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	391
Eco47I	GGWCC	1 cut(s)	127
EcoO109I	RGGNCCY	2 cut(s)	387, 388
EcoRI	GAATTC	1 cut(s)	106
EcoT38I	GRGCYC	1 cut(s)	391
FaeI	CATG	1 cut(s)	14
FaiI	YATR	6 cut(s)	12, 162, 260, 276, 365, 410
FatI	CATG	1 cut(s)	10
FbaI	TGATCA	1 cut(s)	217
Fnu4HI	GCNGC	5 cut(s)	38, 329, 332, 413, 423
FokI	GGATG	3 cut(s)	42, 305, 410
FriOI	GRGCYC	1 cut(s)	391
Fsp4HI	GCNGC	5 cut(s)	38, 329, 332, 413, 423
FspBI	CTAG	1 cut(s)	89
GlaI	GCGC	1 cut(s)	36
GluI	GCNGC	5 cut(s)	38, 329, 332, 413, 423
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	389
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	37
Hin1II	CATG	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	35
HinP1I	GCGC	1 cut(s)	35
HindIII	AAGCTT	1 cut(s)	190
HphI	GGTGA	1 cut(s)	227
Hpy166II	GTNNAC	2 cut(s)	53, 254
Hpy188I	TCNGA	7 cut(s)	18, 103, 112, 143, 184, 222, 319
Hpy188III	TCNNGA	1 cut(s)	119
Hpy8I	GTNNAC	2 cut(s)	53, 254
HpyAV	CCTTC	3 cut(s)	69, 140, 324
HpyCH4III	ACNGT	1 cut(s)	233
HpyCH4V	TGCA	4 cut(s)	254, 367, 412, 422
HpyF3I	CTNAG	1 cut(s)	102
Hsp92II	CATG	1 cut(s)	14
HspAI	GCGC	1 cut(s)	35
Ksp22I	TGATCA	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	217
LpnPI	CCDG	5 cut(s)	9, 198, 300, 353, 417
Lsp1109I	GCAGC	2 cut(s)	340, 424
LweI	GCATC	1 cut(s)	112
MaeI	CTAG	1 cut(s)	89
MalI	GATC	1 cut(s)	219
MboI	GATC	1 cut(s)	217
MboII	GAAGA	1 cut(s)	302
MhlI	GDGCHC	2 cut(s)	256, 391
MluCI	AATT	1 cut(s)	106
MnlI	CCTC	5 cut(s)	20, 85, 194, 283, 378
MroXI	GAANNNNTTC	1 cut(s)	309
MseI	TTAA	2 cut(s)	69, 194
MspA1I	CMGCKG	1 cut(s)	331
NdeII	GATC	1 cut(s)	217
NlaIII	CATG	1 cut(s)	14
NlaIV	GGNNCC	2 cut(s)	283, 389
PaqCI	CACCTGC	1 cut(s)	358
PdmI	GAANNNNTTC	1 cut(s)	309
PkrI	GCNGC	5 cut(s)	39, 330, 333, 414, 424
PspN4I	GGNNCC	2 cut(s)	283, 389
PspOMI	GGGCCC	1 cut(s)	387
PspPI	GGNCC	3 cut(s)	127, 387, 388
RsaI	GTAC	1 cut(s)	22
RsaNI	GTAC	1 cut(s)	21
SaqAI	TTAA	2 cut(s)	69, 194
SatI	GCNGC	5 cut(s)	38, 329, 332, 413, 423
Sau3AI	GATC	1 cut(s)	217
Sau96I	GGNCC	3 cut(s)	127, 387, 388
ScaI	AGTACT	1 cut(s)	22
SduI	GDGCHC	2 cut(s)	256, 391
SetI	ASST	6 cut(s)	61, 90, 194, 303, 372, 406
SfaNI	GCATC	1 cut(s)	112
SinI	GGWCC	1 cut(s)	127
Sse9I	AATT	1 cut(s)	106
SsiI	CCGC	3 cut(s)	38, 125, 331
SspMI	CTAG	1 cut(s)	89
TaaI	ACNGT	1 cut(s)	233
TaqI	TCGA	1 cut(s)	248
TasI	AATT	1 cut(s)	106
TatI	WGTACW	1 cut(s)	20
TauI	GCSGC	2 cut(s)	40, 334
Tru1I	TTAA	2 cut(s)	69, 194
Tru9I	TTAA	2 cut(s)	69, 194
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	3 cut(s)	328, 412, 422
TspDTI	ATGAA	3 cut(s)	309, 371, 414
TspGWI	ACGGA	1 cut(s)	90
TspRI	CASTG	1 cut(s)	238
VneI	GTGCAC	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	1 cut(s)	106
XmnI	GAANNNNTTC	1 cut(s)	309
XspI	CTAG	1 cut(s)	89
ZrmI	AGTACT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.