Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3586692 .. 3587581

Gene Structure 890 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

ATGTCGCCGGATATTGCCAAGATCCGGAAGCTTGTTCATCAGTCTAGATGTTTGCAGGACAAAATGACTGCTAAGGAGAGCACCACTTGGCTAGCCATCATTAACCAGGAGGAAAATTTGGCTCAGATGTTATATCCTGATAGATTTCCACCTCCATCACCTCTTTTGAGTGAGTCTTTCGTAATCAGTTGTACCAGTGATTATGATGTTGAAGTGGTTGATGACGAACAGAATAATGAAGTTCTTTTTAATCACTTCAATACTGAAACCGCTGGACAAAGAGATGTACCGATGCATCATATTAAGGGAGAGCTGGTTGAGACCAATTCAAACTTTGGTCAAAAGAGGAAGCAGCTGCCTGAAGAGCCACACATGATTCTAAATCATCAGATTTACACCTGCGAATATCAGCATTGCCCTTATCATGATTATCGCCTAGGCTTTCTCGACATAACTGCAAGAAATAATCACCAGTTGACTTGTTCACACAGGAATAATTCTTCACAAGTGTTTGGAATGTCACACTTTAATTGTAACAGTGACAAACTTGGGGGCTCTCTACCCGCTTCCCAACCTATTCCAGCTATTCAACAACCAGTGAAGCAGACAAGTTGTTTGAATGCTTCGGGACATGGAGTTGCTGGGGATGGGCAGAAAATGATATCTGAGCATGTGTCATTCTATGATAGTAATATTCAGCAGAGCAAGAACTCGGATCCTGGAAGTCTCAATGGTATAGAAGACAACAACCAGCATCAGGTGAATTATCAATTTCCGATGAATGATAACGTCTTTGATCAGGGGGTGGTTATGGGACCCAACATGTCTGAACCCTCTCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000160 GO:0000976 GO:0001067 GO:0001666 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009719 GO:0009723 GO:0009725 GO:0009743 GO:0009755 GO:0009756 GO:0009873 GO:0009889 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010182 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0036293 GO:0042221 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0065007 GO:0070482 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071322 GO:0071369 GO:0071495 GO:0080090 GO:0097159 GO:0098542 GO:0140110 GO:1901363 GO:1901700 GO:1901701 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04016 ko04075 map04016 map04075

Pfam Domains

Protein Families

EIN3

Protein Analysis

282

Amino Acids

31.69

Weight (kDa)

5.34

Isoelectric Point (pI)

60.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EIN3_DNA-bd	PF04873	1 - 38	1.7e-09	Ethylene insensitive 3, DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	407
Acc36I	ACCTGC	1 cut(s)	407
AccIII	TCCGGA	1 cut(s)	24
AciI	CCGC	2 cut(s)	270, 564
AclWI	GGATC	3 cut(s)	16, 710, 723
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	2 cut(s)	193, 288
AfiI	CCNNNNNNNGG	2 cut(s)	24, 757
AflIII	ACRYGT	1 cut(s)	822
AgsI	TTSAA	5 cut(s)	212, 259, 330, 590, 619
AjnI	CCWGG	2 cut(s)	105, 718
AluBI	AGCT	4 cut(s)	31, 313, 355, 584
AluI	AGCT	4 cut(s)	31, 313, 355, 584
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	2 cut(s)	314, 731
AlwI	GGATC	3 cut(s)	16, 710, 723
Aor13HI	TCCGGA	1 cut(s)	24
ApeKI	GCWGC	2 cut(s)	352, 355
ApoI	RAATTY	1 cut(s)	115
ArsI	GACNNNNNNTTYG	2 cut(s)	598, 630
AspA2I	CCTAGG	1 cut(s)	436
AspS9I	GGNCC	1 cut(s)	815
AsuHPI	GGTGA	3 cut(s)	150, 461, 772
AsuNHI	GCTAGC	1 cut(s)	91
AvaII	GGWCC	1 cut(s)	815
AvrII	CCTAGG	1 cut(s)	436
BamHI	GGATCC	1 cut(s)	715
BanII	GRGCYC	1 cut(s)	557
BbsI	GAAGAC	1 cut(s)	747
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	342, 364
BccI	CCATC	3 cut(s)	104, 163, 641
BcgI	CGANNNNNNTGC	2 cut(s)	437, 471
BciT130I	CCWGG	2 cut(s)	107, 720
BclI	TGATCA	1 cut(s)	796
BcoDI	GTCTC	2 cut(s)	314, 731
BfaI	CTAG	3 cut(s)	45, 92, 437
BfuAI	ACCTGC	1 cut(s)	407
BisI	GCNGC	2 cut(s)	353, 356
BlnI	CCTAGG	1 cut(s)	436
BlsI	GCNGC	2 cut(s)	354, 357
Bme1390I	CCNGG	2 cut(s)	107, 720
Bme18I	GGWCC	1 cut(s)	815
BmgT120I	GGNCC	1 cut(s)	815
BmiI	GGNNCC	3 cut(s)	717, 816, 817
BmrFI	CCNGG	2 cut(s)	107, 720
BmsI	GCATC	3 cut(s)	282, 304, 763
BmtI	GCTAGC	1 cut(s)	95
BpiI	GAAGAC	1 cut(s)	747
Bpu10I	CCTNAGC	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	1 cut(s)	436
BsaWI	WCCGGW	1 cut(s)	24
BsaXI	ACNNNNNCTCC	2 cut(s)	300, 330
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 757
Bse1I	ACTGG	3 cut(s)	195, 472, 596
Bse3DI	GCAATG	1 cut(s)	412
BseAI	TCCGGA	1 cut(s)	24
BseBI	CCWGG	2 cut(s)	107, 720
BseDI	CCNNGG	1 cut(s)	436
BseGI	GGATG	1 cut(s)	652
BseLI	CCNNNNNNNGG	2 cut(s)	24, 757
BseMI	GCAATG	1 cut(s)	412
BseMII	CTCAG	2 cut(s)	137, 657
BseNI	ACTGG	3 cut(s)	195, 472, 596
BseXI	GCAGC	2 cut(s)	342, 364
BseYI	CCCAGC	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	2 cut(s)	8, 25
BslFI	GGGAC	2 cut(s)	642, 828
BslI	CCNNNNNNNGG	2 cut(s)	24, 757
BsmAI	GTCTC	2 cut(s)	314, 731
BsmFI	GGGAC	2 cut(s)	642, 828
BsmI	GAATGC	1 cut(s)	625
Bso31I	GGTCTC	1 cut(s)	314
Bsp1286I	GDGCHC	2 cut(s)	83, 557
Bsp13I	TCCGGA	1 cut(s)	24
Bsp143I	GATC	3 cut(s)	21, 715, 796
BspACI	CCGC	2 cut(s)	270, 564
BspCNI	CTCAG	2 cut(s)	136, 658
BspEI	TCCGGA	1 cut(s)	24
BspHI	TCATGA	1 cut(s)	424
BspLI	GGNNCC	3 cut(s)	717, 816, 817
BspMI	ACCTGC	1 cut(s)	407
BspOI	GCTAGC	1 cut(s)	95
BspPI	GGATC	3 cut(s)	16, 710, 723
BspQI	GCTCTTC	1 cut(s)	357
BspTNI	GGTCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	412
BsrI	ACTGG	3 cut(s)	195, 472, 596
BssECI	CCNNGG	1 cut(s)	436
BssMI	GATC	3 cut(s)	21, 715, 796
BssT1I	CCWWGG	1 cut(s)	436
Bst2UI	CCWGG	2 cut(s)	107, 720
Bst4CI	ACNGT	1 cut(s)	539
Bst6I	CTCTTC	2 cut(s)	357, 843
BstC8I	GCNNGC	1 cut(s)	93
BstDEI	CTNAG	3 cut(s)	72, 123, 666
BstF5I	GGATG	1 cut(s)	652
BstKTI	GATC	3 cut(s)	24, 718, 799
BstMAI	GTCTC	2 cut(s)	314, 731
BstMBI	GATC	3 cut(s)	21, 715, 796
BstMWI	GCNNNNNNNGC	1 cut(s)	364
BstNI	CCWGG	2 cut(s)	107, 720
BstNSI	RCATGY	2 cut(s)	674, 826
BstSCI	CCNGG	2 cut(s)	105, 718
BstV1I	GCAGC	2 cut(s)	342, 364
BstV2I	GAAGAC	1 cut(s)	747
BstX2I	RGATCY	2 cut(s)	21, 715
BstYI	RGATCY	2 cut(s)	21, 715
BtsCI	GGATG	1 cut(s)	652
BtsIMutI	CAGTG	3 cut(s)	202, 544, 603
BveI	ACCTGC	1 cut(s)	407
Cac8I	GCNNGC	1 cut(s)	93
CciI	TCATGA	1 cut(s)	424
Cfr13I	GGNCC	1 cut(s)	815
Csp6I	GTAC	2 cut(s)	192, 287
CviAII	CATG	5 cut(s)	373, 425, 632, 671, 823
CviQI	GTAC	2 cut(s)	192, 287
DdeI	CTNAG	3 cut(s)	72, 123, 666
DpnI	GATC	3 cut(s)	23, 717, 798
DpnII	GATC	3 cut(s)	21, 715, 796
Eam1104I	CTCTTC	2 cut(s)	357, 843
EarI	CTCTTC	2 cut(s)	357, 843
Eco130I	CCWWGG	1 cut(s)	436
Eco24I	GRGCYC	1 cut(s)	557
Eco31I	GGTCTC	1 cut(s)	314
Eco32I	GATATC	1 cut(s)	663
Eco47I	GGWCC	1 cut(s)	815
Eco57I	CTGAAG	1 cut(s)	381
EcoO109I	RGGNCCY	1 cut(s)	815
EcoRII	CCWGG	2 cut(s)	105, 718
EcoRV	GATATC	1 cut(s)	663
EcoT14I	CCWWGG	1 cut(s)	436
EcoT22I	ATGCAT	1 cut(s)	297
EcoT38I	GRGCYC	1 cut(s)	557
ErhI	CCWWGG	1 cut(s)	436
FaeI	CATG	5 cut(s)	376, 428, 635, 674, 826
FaqI	GGGAC	2 cut(s)	642, 828
FatI	CATG	5 cut(s)	372, 424, 631, 670, 822
FauI	CCCGC	1 cut(s)	571
FbaI	TGATCA	1 cut(s)	796
Fnu4HI	GCNGC	2 cut(s)	353, 356
FokI	GGATG	1 cut(s)	659
FriOI	GRGCYC	1 cut(s)	557
Fsp4HI	GCNGC	2 cut(s)	353, 356
FspBI	CTAG	3 cut(s)	45, 92, 437
GluI	GCNGC	2 cut(s)	353, 356
GsaI	CCCAGC	1 cut(s)	645
HapII	CCGG	2 cut(s)	8, 25
Hin1II	CATG	5 cut(s)	376, 428, 635, 674, 826
HincII	GTYRAC	1 cut(s)	477
HindII	GTYRAC	1 cut(s)	477
HindIII	AAGCTT	1 cut(s)	29
HinfI	GANTC	2 cut(s)	173, 376
HpaII	CCGG	2 cut(s)	8, 25
HphI	GGTGA	3 cut(s)	150, 461, 772
Hpy166II	GTNNAC	2 cut(s)	477, 485
Hpy188I	TCNGA	6 cut(s)	126, 390, 667, 715, 777, 829
Hpy188III	TCNNGA	6 cut(s)	25, 45, 137, 425, 446, 627
Hpy8I	GTNNAC	2 cut(s)	477, 485
HpyCH4III	ACNGT	1 cut(s)	539
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	3 cut(s)	55, 295, 458
HpyF10VI	GCNNNNNNNGC	1 cut(s)	364
HpyF3I	CTNAG	3 cut(s)	72, 123, 666
HpySE526I	ACGT	1 cut(s)	789
Hsp92II	CATG	5 cut(s)	376, 428, 635, 674, 826
KflI	GGGWCCC	1 cut(s)	815
Kpn2I	TCCGGA	1 cut(s)	24
Ksp22I	TGATCA	1 cut(s)	796
Kzo9I	GATC	3 cut(s)	21, 715, 796
LguI	GCTCTTC	1 cut(s)	357
Lsp1109I	GCAGC	2 cut(s)	342, 364
LweI	GCATC	3 cut(s)	282, 304, 763
MaeI	CTAG	3 cut(s)	45, 92, 437
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	3 cut(s)	519, 533, 539
MalI	GATC	3 cut(s)	23, 717, 798
MboI	GATC	3 cut(s)	21, 715, 796
MboII	GAAGA	4 cut(s)	374, 492, 752, 830
MflI	RGATCY	2 cut(s)	21, 715
MhlI	GDGCHC	2 cut(s)	83, 557
MluCI	AATT	6 cut(s)	115, 325, 496, 529, 763, 770
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	5 cut(s)	103, 162, 171, 339, 844
Mph1103I	ATGCAT	1 cut(s)	297
MroI	TCCGGA	1 cut(s)	24
MseI	TTAA	4 cut(s)	102, 249, 303, 528
MspA1I	CMGCKG	2 cut(s)	272, 355
MspI	CCGG	2 cut(s)	8, 25
MspR9I	CCNGG	2 cut(s)	107, 720
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	2 cut(s)	107, 720
MwoI	GCNNNNNNNGC	1 cut(s)	364
NdeII	GATC	3 cut(s)	21, 715, 796
NheI	GCTAGC	1 cut(s)	91
NlaIII	CATG	5 cut(s)	376, 428, 635, 674, 826
NlaIV	GGNNCC	3 cut(s)	717, 816, 817
NmuCI	GTSAC	2 cut(s)	519, 539
NsiI	ATGCAT	1 cut(s)	297
NspI	RCATGY	2 cut(s)	674, 826
PagI	TCATGA	1 cut(s)	424
PaqCI	CACCTGC	1 cut(s)	407
PciI	ACATGT	1 cut(s)	822
PciSI	GCTCTTC	1 cut(s)	357
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	1 cut(s)	376
PfoI	TCCNGGA	1 cut(s)	718
PkrI	GCNGC	2 cut(s)	354, 357
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
PpuMI	RGGWCCY	1 cut(s)	815
PscI	ACATGT	1 cut(s)	822
Psp5II	RGGWCCY	1 cut(s)	815
Psp6I	CCWGG	2 cut(s)	105, 718
PspFI	CCCAGC	1 cut(s)	641
PspGI	CCWGG	2 cut(s)	105, 718
PspN4I	GGNNCC	3 cut(s)	717, 816, 817
PspPI	GGNCC	1 cut(s)	815
PspPPI	RGGWCCY	1 cut(s)	815
PsuI	RGATCY	2 cut(s)	21, 715
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	2 cut(s)	193, 288
RsaNI	GTAC	2 cut(s)	192, 287
SapI	GCTCTTC	1 cut(s)	357
SaqAI	TTAA	4 cut(s)	102, 249, 303, 528
SatI	GCNGC	2 cut(s)	353, 356
Sau3AI	GATC	3 cut(s)	21, 715, 796
Sau96I	GGNCC	1 cut(s)	815
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	107, 720
SduI	GDGCHC	2 cut(s)	83, 557
SfaNI	GCATC	3 cut(s)	282, 304, 763
SinI	GGWCC	1 cut(s)	815
Sse9I	AATT	6 cut(s)	115, 325, 496, 529, 763, 770
SsiI	CCGC	2 cut(s)	270, 564
SspI	AATATT	1 cut(s)	694
SspMI	CTAG	3 cut(s)	45, 92, 437
StyD4I	CCNGG	2 cut(s)	105, 718
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	1 cut(s)	539
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	1 cut(s)	447
TasI	AATT	6 cut(s)	115, 325, 496, 529, 763, 770
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	4 cut(s)	102, 249, 303, 528
Tru9I	TTAA	4 cut(s)	102, 249, 303, 528
TscAI	CASTG	3 cut(s)	202, 544, 603
TseFI	GTSAC	2 cut(s)	519, 539
TseI	GCWGC	2 cut(s)	352, 355
Tsp45I	GTSAC	2 cut(s)	519, 539
TspDTI	ATGAA	3 cut(s)	26, 252, 794
TspRI	CASTG	3 cut(s)	202, 544, 603
VpaK11BI	GGWCC	1 cut(s)	815
XapI	RAATTY	1 cut(s)	115
XbaI	TCTAGA	1 cut(s)	44
XceI	RCATGY	2 cut(s)	674, 826
XmaJI	CCTAGG	1 cut(s)	436
XspI	CTAG	3 cut(s)	45, 92, 437
Zsp2I	ATGCAT	1 cut(s)	297

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.