Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

3704889 .. 3705461

Gene Structure 573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGAGAGCGAGGGTGGCGGACTTTGGGCTTGCAAAACAGAGCATGGAAGGCCAGTCTCATCTCACTATTAGAGTGGCACGGACTCATGGATACTTAGCCCCTGAATATGCTCTTTATGGACAGCTGATCGAGAAGAGCGATGTTTATAGCTTTGGAGTGGTTATTTTGGAGATTATGTGTGGGAGAAAAGCACTTGATTTGTCGTCTTCGGGTTCCCCTCGTGCTTTCTTGATCACAGATTGGGCTTGGTCATTAGTGAAATCTGGAAAAGCTGAGCAAGCTTTAGACTTCTCATTGCTGAGAGATGGGGATAATGCGAATTCGAATCCAAAGGGCATAATGGAGCGATATTTGCTGGTCGGCATTTTGTGTGCTCATATAATGGTGGCTTTACGGCCTACCATTTTGGAAGCCCTGAAAATGCTGGAGGGAGATATTGAGGTGCCACAGATTCCAGATAGGCCGATGCCTCTTGGTCATCCTTCAAATTTTGGCAATGGCAACAGTAACACGTTCAGCATCTCACCAGCTTTGAGCGGGCCAAAATTACACAGCGGAGACATGCTCGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

191

Amino Acids

20.64

Weight (kDa)

6.51

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 63	9e-10	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	4 - 66	6.8e-10	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	442
AccBSI	CCGCTC	1 cut(s)	537
AciI	CCGC	3 cut(s)	17, 537, 555
AcsI	RAATTY	2 cut(s)	319, 487
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	1 cut(s)	486
AluBI	AGCT	5 cut(s)	124, 150, 272, 281, 530
AluI	AGCT	5 cut(s)	124, 150, 272, 281, 530
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	2 cut(s)	60, 552
Ama87I	CYCGRG	1 cut(s)	566
AoxI	GGCC	4 cut(s)	49, 395, 461, 539
ApoI	RAATTY	2 cut(s)	319, 487
AspS9I	GGNCC	1 cut(s)	539
AsuHPI	GGTGA	1 cut(s)	516
AsuII	TTCGAA	1 cut(s)	323
AvaI	CYCGRG	1 cut(s)	566
BanI	GGYRCC	1 cut(s)	442
BauI	CACGAG	1 cut(s)	219
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	376
BccI	CCATC	1 cut(s)	299
BceAI	ACGGC	1 cut(s)	410
BciVI	GTATCC	1 cut(s)	83
BclI	TGATCA	1 cut(s)	231
BcoDI	GTCTC	2 cut(s)	60, 552
BfuI	GTATCC	1 cut(s)	83
BlpI	GCTNAGC	1 cut(s)	273
BmeT110I	CYCGRG	1 cut(s)	566
BmgT120I	GGNCC	1 cut(s)	539
BmiI	GGNNCC	2 cut(s)	214, 444
BmsI	GCATC	2 cut(s)	456, 528
BpiI	GAAGAC	1 cut(s)	198
BplI	GAGNNNNNCTC	1 cut(s)	549
BpmI	CTGGAG	1 cut(s)	446
Bpu1102I	GCTNAGC	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	323
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	2 cut(s)	293, 502
BseGI	GGATG	1 cut(s)	478
BseMI	GCAATG	2 cut(s)	293, 502
BseMII	CTCAG	2 cut(s)	264, 290
BseNI	ACTGG	1 cut(s)	52
BshFI	GGCC	4 cut(s)	51, 397, 463, 541
BshNI	GGYRCC	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	1 cut(s)	566
BsmAI	GTCTC	2 cut(s)	60, 552
BsnI	GGCC	4 cut(s)	51, 397, 463, 541
BsoBI	CYCGRG	1 cut(s)	566
Bsp119I	TTCGAA	1 cut(s)	323
Bsp1286I	GDGCHC	1 cut(s)	376
Bsp143I	GATC	2 cut(s)	126, 231
Bsp1720I	GCTNAGC	1 cut(s)	273
BspACI	CCGC	3 cut(s)	17, 537, 555
BspANI	GGCC	4 cut(s)	51, 397, 463, 541
BspCNI	CTCAG	2 cut(s)	265, 291
BspLI	GGNNCC	2 cut(s)	214, 444
BspQI	GCTCTTC	1 cut(s)	128
BspT104I	TTCGAA	1 cut(s)	323
BspT107I	GGYRCC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	537
BsrDI	GCAATG	2 cut(s)	293, 502
BsrI	ACTGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	126, 231
BssSI	CACGAG	1 cut(s)	219
Bst2BI	CACGAG	1 cut(s)	219
Bst4CI	ACNGT	1 cut(s)	506
Bst6I	CTCTTC	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	323
BstC8I	GCNNGC	3 cut(s)	30, 279, 539
BstDEI	CTNAG	3 cut(s)	94, 273, 299
BstF5I	GGATG	1 cut(s)	478
BstKTI	GATC	2 cut(s)	129, 234
BstMAI	GTCTC	2 cut(s)	60, 552
BstMBI	GATC	2 cut(s)	126, 231
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 48, 278, 352
BstNSI	RCATGY	1 cut(s)	565
BstV2I	GAAGAC	1 cut(s)	198
BsuI	GTATCC	1 cut(s)	83
BsuRI	GGCC	4 cut(s)	51, 397, 463, 541
BtgZI	GCGATG	1 cut(s)	153
BtsCI	GGATG	1 cut(s)	478
Cac8I	GCNNGC	3 cut(s)	30, 279, 539
Cfr13I	GGNCC	1 cut(s)	539
CviAII	CATG	3 cut(s)	43, 86, 562
DdeI	CTNAG	3 cut(s)	94, 273, 299
DpnI	GATC	2 cut(s)	128, 233
DpnII	GATC	2 cut(s)	126, 231
Eam1104I	CTCTTC	1 cut(s)	128
EarI	CTCTTC	1 cut(s)	128
EciI	GGCGGA	1 cut(s)	32
Eco88I	CYCGRG	1 cut(s)	566
EcoRI	GAATTC	1 cut(s)	319
FaeI	CATG	3 cut(s)	46, 89, 565
FatI	CATG	3 cut(s)	42, 85, 561
FauI	CCCGC	1 cut(s)	530
FbaI	TGATCA	1 cut(s)	231
FokI	GGATG	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	446
HaeIII	GGCC	4 cut(s)	51, 397, 463, 541
Hin1II	CATG	3 cut(s)	46, 89, 565
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	3 cut(s)	82, 325, 451
HphI	GGTGA	1 cut(s)	516
Hpy188III	TCNNGA	4 cut(s)	130, 229, 264, 455
HpyAV	CCTTC	2 cut(s)	41, 492
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	1 cut(s)	512
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 48, 278, 352
HpyF3I	CTNAG	3 cut(s)	94, 273, 299
HpySE526I	ACGT	1 cut(s)	512
Hsp92II	CATG	3 cut(s)	46, 89, 565
Ksp22I	TGATCA	1 cut(s)	231
Kzo9I	GATC	2 cut(s)	126, 231
LguI	GCTCTTC	1 cut(s)	128
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	8 cut(s)	65, 114, 249, 341, 410, 428, 468, 540
LweI	GCATC	2 cut(s)	456, 528
MaeII	ACGT	1 cut(s)	512
MaeIII	GTNAC	1 cut(s)	506
MalI	GATC	2 cut(s)	128, 233
MbiI	CCGCTC	1 cut(s)	537
MboI	GATC	2 cut(s)	126, 231
MboII	GAAGA	2 cut(s)	145, 198
MhlI	GDGCHC	1 cut(s)	376
MluCI	AATT	3 cut(s)	319, 487, 545
MlyI	GAGTC	1 cut(s)	76
MnlI	CCTC	5 cut(s)	3, 228, 421, 433, 480
MspA1I	CMGCKG	2 cut(s)	124, 555
MwoI	GCNNNNNNNGC	4 cut(s)	14, 48, 278, 352
NdeII	GATC	2 cut(s)	126, 231
NlaIII	CATG	3 cut(s)	46, 89, 565
NlaIV	GGNNCC	2 cut(s)	214, 444
NspI	RCATGY	1 cut(s)	565
NspV	TTCGAA	1 cut(s)	323
PciSI	GCTCTTC	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	135
PfeI	GAWTC	2 cut(s)	325, 451
PleI	GAGTC	1 cut(s)	76
PpsI	GAGTC	1 cut(s)	76
PspN4I	GGNNCC	2 cut(s)	214, 444
PspPI	GGNCC	1 cut(s)	539
PvuII	CAGCTG	1 cut(s)	124
SapI	GCTCTTC	1 cut(s)	128
Sau3AI	GATC	2 cut(s)	126, 231
Sau96I	GGNCC	1 cut(s)	539
SchI	GAGTC	1 cut(s)	76
SduI	GDGCHC	1 cut(s)	376
SetI	ASST	7 cut(s)	126, 152, 274, 283, 444, 515, 532
SfaNI	GCATC	2 cut(s)	456, 528
SfuI	TTCGAA	1 cut(s)	323
Sse9I	AATT	3 cut(s)	319, 487, 545
SsiI	CCGC	3 cut(s)	17, 537, 555
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	1 cut(s)	515
TaqI	TCGA	2 cut(s)	129, 323
TasI	AATT	3 cut(s)	319, 487, 545
TfiI	GAWTC	2 cut(s)	325, 451
TspGWI	ACGGA	1 cut(s)	94
XapI	RAATTY	2 cut(s)	319, 487
XceI	RCATGY	1 cut(s)	565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.