pycom07g04310

UDP-glucose glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
3722876 .. 3724180
1305 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 300 bp
ATGAAAAATCTTTCTAAAAGATTGGTCCGAAACTTCCAGGGAAAAGCTAAGTATGTTGTTAGACAAGTATTACCTTCTGGCAGTGATGCCAAGATTGACTGTTGTGGTGCTGTTGGTACAAGAGATTCATTAAACTTGGGAGGCTATGGAGTAGAACTTGCTTTGAAAAATATGGAATATAAGGCTATGGATGATAGCGCTATAAAGAAAGGTGACACATTAGAAGATCCCAGGATTGAAGATCGCAGCCAAGAAGTCAGAGGGCTTATATTCTCCAAAATTCTGGTTTGTTTTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0001101 GO:0002218 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003824 GO:0003980 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006011 GO:0006139 GO:0006457 GO:0006458 GO:0006464 GO:0006486 GO:0006487 GO:0006508 GO:0006515 GO:0006725 GO:0006793 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0006986 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008194 GO:0008219 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009100 GO:0009101 GO:0009225 GO:0009626 GO:0009719 GO:0009725 GO:0009751 GO:0009812 GO:0009987 GO:0010033 GO:0010204 GO:0010243 GO:0010498 GO:0012501 GO:0012505 GO:0014070 GO:0016740 GO:0016757 GO:0016758 GO:0018193 GO:0018196 GO:0018279 GO:0019538 GO:0023052 GO:0030163 GO:0030968 GO:0031347 GO:0031349 GO:0033554 GO:0034050 GO:0034620 GO:0034641 GO:0034645 GO:0034976 GO:0035251 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0042221 GO:0042440 GO:0042493 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043413 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046283 GO:0046483 GO:0046527 GO:0046677 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051082 GO:0051084 GO:0051603 GO:0051716 GO:0051788 GO:0055086 GO:0065007 GO:0070085 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0080134 GO:0097359 GO:1901135 GO:1901137 GO:1901360 GO:1901564 GO:1901565 GO:1901566 GO:1901575 GO:1901576 GO:1901698 GO:1901700
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Glyco_transf_8 UDP-g_GGTase

Protein Analysis

100

Amino Acids

10.97

Weight (kDa)

9.07

Isoelectric Point (pI)

30.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 221
AcsI RAATTY 1 cut(s) 279
AfaI GTAC 1 cut(s) 118
AfeI AGCGCT 1 cut(s) 199
AgsI TTSAA 2 cut(s) 166, 239
AjnI CCWGG 2 cut(s) 36, 230
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
AlwI GGATC 1 cut(s) 221
Aor51HI AGCGCT 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 279
AspLEI GCGC 1 cut(s) 200
AspS9I GGNCC 1 cut(s) 25
AsuHPI GGTGA 1 cut(s) 224
AvaII GGWCC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 258
BciT130I CCWGG 2 cut(s) 38, 232
BfoI RGCGCY 1 cut(s) 201
BisI GCNGC 1 cut(s) 247
BlsI GCNGC 1 cut(s) 248
Bme1390I CCNGG 2 cut(s) 38, 232
Bme18I GGWCC 1 cut(s) 25
BmgT120I GGNCC 1 cut(s) 25
BmrFI CCNGG 2 cut(s) 38, 232
BmsI GCATC 1 cut(s) 76
BsaJI CCNNGG 2 cut(s) 37, 230
BseBI CCWGG 2 cut(s) 38, 232
BseDI CCNNGG 2 cut(s) 37, 230
BseGI GGATG 1 cut(s) 196
BseXI GCAGC 1 cut(s) 258
Bsp143I GATC 2 cut(s) 226, 241
BspPI GGATC 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 37, 230
BssMI GATC 2 cut(s) 226, 241
Bst2UI CCWGG 2 cut(s) 38, 232
Bst4CI ACNGT 1 cut(s) 101
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 196
BstH2I RGCGCY 1 cut(s) 201
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 2 cut(s) 229, 244
BstMBI GATC 2 cut(s) 226, 241
BstNI CCWGG 2 cut(s) 38, 232
BstSCI CCNGG 2 cut(s) 36, 230
BstV1I GCAGC 1 cut(s) 258
BstX2I RGATCY 1 cut(s) 226
BstXI CCANNNNNNTGG 1 cut(s) 283
BstYI RGATCY 1 cut(s) 226
BtsCI GGATG 1 cut(s) 196
BtsI GCAGTG 1 cut(s) 88
BtsIMutI CAGTG 1 cut(s) 88
CfoI GCGC 1 cut(s) 200
Cfr13I GGNCC 1 cut(s) 25
Csp6I GTAC 1 cut(s) 117
CviJI RGCY 5 cut(s) 47, 144, 185, 249, 265
CviKI_1 RGCY 5 cut(s) 47, 144, 185, 249, 265
CviQI GTAC 1 cut(s) 117
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 228, 243
DpnII GATC 2 cut(s) 226, 241
Eco47I GGWCC 1 cut(s) 25
Eco47III AGCGCT 1 cut(s) 199
EcoRII CCWGG 2 cut(s) 36, 230
FaiI YATR 7 cut(s) 54, 147, 173, 180, 188, 203, 269
Fnu4HI GCNGC 1 cut(s) 247
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 1 cut(s) 247
GlaI GCGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 247
HaeII RGCGCY 1 cut(s) 201
HhaI GCGC 1 cut(s) 200
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HinfI GANTC 1 cut(s) 125
HphI GGTGA 1 cut(s) 224
Hpy188I TCNGA 2 cut(s) 29, 260
HpyAV CCTTC 1 cut(s) 84
HpyCH4III ACNGT 1 cut(s) 101
HpyF3I CTNAG 1 cut(s) 48
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 2 cut(s) 226, 241
LpnPI CCDG 6 cut(s) 23, 50, 63, 217, 244, 269
Lsp1109I GCAGC 1 cut(s) 258
LweI GCATC 1 cut(s) 76
MaeIII GTNAC 1 cut(s) 212
MalI GATC 2 cut(s) 228, 243
MboI GATC 2 cut(s) 226, 241
MboII GAAGA 2 cut(s) 236, 251
MflI RGATCY 1 cut(s) 226
MluCI AATT 1 cut(s) 279
MnlI CCTC 2 cut(s) 134, 254
MseI TTAA 1 cut(s) 131
MspR9I CCNGG 2 cut(s) 38, 232
MvaI CCWGG 2 cut(s) 38, 232
NdeII GATC 2 cut(s) 226, 241
NmuCI GTSAC 1 cut(s) 212
PfeI GAWTC 1 cut(s) 125
PkrI GCNGC 1 cut(s) 248
Psp6I CCWGG 2 cut(s) 36, 230
PspGI CCWGG 2 cut(s) 36, 230
PspPI GGNCC 1 cut(s) 25
PsuI RGATCY 1 cut(s) 226
RsaI GTAC 1 cut(s) 118
RsaNI GTAC 1 cut(s) 117
SaqAI TTAA 1 cut(s) 131
SatI GCNGC 1 cut(s) 247
Sau3AI GATC 2 cut(s) 226, 241
Sau96I GGNCC 1 cut(s) 25
ScrFI CCNGG 2 cut(s) 38, 232
SetI ASST 3 cut(s) 49, 76, 214
SfaNI GCATC 1 cut(s) 76
SinI GGWCC 1 cut(s) 25
Sse9I AATT 1 cut(s) 279
StyD4I CCNGG 2 cut(s) 36, 230
TaaI ACNGT 1 cut(s) 101
TasI AATT 1 cut(s) 279
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 1 cut(s) 131
Tru9I TTAA 1 cut(s) 131
TscAI CASTG 1 cut(s) 88
TseFI GTSAC 1 cut(s) 212
TseI GCWGC 1 cut(s) 246
Tsp45I GTSAC 1 cut(s) 212
TspDTI ATGAA 2 cut(s) 17, 117
TspRI CASTG 1 cut(s) 88
VpaK11BI GGWCC 1 cut(s) 25
XapI RAATTY 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.