pycom07g04760

Belongs to the short-chain dehydrogenases reductases (SDR) family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
4079549 .. 4081262
1714 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 372 bp
ATGGTGGTGGATCGACATAGAAGAAGATGGTGGTCGGAGGACACGGTTGCAATAGTGACAGGAGCAAACAAGGGAATAGGGTTTGCAGTTGCGAAGAGGATGGCGGAGTTGGGAGTGAGAGTGATATTAACGGCCAGAGACAAGGAAAGGGGTGGCAAGGCTCTTGAGGCACTCAGAGCTCAAGGTCTTCACAGTGTAGTCTTCTCTTGCCTTGATGTCTCCGATCCTGCTTCTATCAAATCTTTCACCTTATGGTTCCAAAAAGCCTATGCAGTATTGGATATTCTTGTGAACAATGCAGCTGTGTCGTTTAACGATATCAATGAAAATTCTGTGGAACATGCTGAGACAGTGATGAAAACCAACTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

13.65

Weight (kDa)

8.89

Isoelectric Point (pI)

36.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
adh_short PF00106 16 - 123 1.8e-22 short chain dehydrogenase
KR PF08659 17 - 118 2.4e-07 KR domain
adh_short_C2 PF13561 21 - 122 3.1e-16 Enoyl-(Acyl carrier protein) reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 104
AclWI GGATC 2 cut(s) 18, 218
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 1 cut(s) 328
AluBI AGCT 2 cut(s) 179, 302
AluI AGCT 2 cut(s) 179, 302
Alw21I GWGCWC 1 cut(s) 181
Alw26I GTCTC 3 cut(s) 132, 223, 341
AlwI GGATC 2 cut(s) 18, 218
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 1 cut(s) 299
ApoI RAATTY 1 cut(s) 328
AsuHPI GGTGA 1 cut(s) 238
BanII GRGCYC 1 cut(s) 181
BbsI GAAGAC 2 cut(s) 179, 193
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 311
BccI CCATC 2 cut(s) 21, 94
BceAI ACGGC 1 cut(s) 147
BcgI CGANNNNNNTGC 2 cut(s) 288, 322
BcoDI GTCTC 3 cut(s) 132, 223, 341
BisI GCNGC 1 cut(s) 300
BlsI GCNGC 1 cut(s) 301
BmiI GGNNCC 1 cut(s) 257
BpiI GAAGAC 2 cut(s) 179, 193
BpuEI CTTGAG 2 cut(s) 165, 185
BsaXI ACNNNNNCTCC 2 cut(s) 105, 135
BseGI GGATG 1 cut(s) 105
BseMII CTCAG 2 cut(s) 187, 336
BseXI GCAGC 1 cut(s) 311
BshFI GGCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 181
BsmAI GTCTC 3 cut(s) 132, 223, 341
BsnI GGCC 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 181
Bsp143I GATC 2 cut(s) 10, 223
BspACI CCGC 1 cut(s) 104
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 2 cut(s) 186, 337
BspLI GGNNCC 1 cut(s) 257
BspPI GGATC 2 cut(s) 18, 218
BssMI GATC 2 cut(s) 10, 223
Bst4CI ACNGT 3 cut(s) 46, 194, 352
Bst6I CTCTTC 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 173, 345
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 2 cut(s) 13, 226
BstMAI GTCTC 3 cut(s) 132, 223, 341
BstMBI GATC 2 cut(s) 10, 223
BstMWI GCNNNNNNNGC 2 cut(s) 167, 176
BstNSI RCATGY 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 311
BstV2I GAAGAC 2 cut(s) 179, 193
BsuRI GGCC 1 cut(s) 134
BtsCI GGATG 1 cut(s) 105
BtsIMutI CAGTG 2 cut(s) 199, 357
CviAII CATG 1 cut(s) 341
CviJI RGCY 5 cut(s) 134, 161, 179, 266, 302
CviKI_1 RGCY 5 cut(s) 134, 161, 179, 266, 302
DdeI CTNAG 2 cut(s) 173, 345
DpnI GATC 2 cut(s) 12, 225
DpnII GATC 2 cut(s) 10, 223
EaeI YGGCCR 1 cut(s) 132
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EciI GGCGGA 1 cut(s) 119
Ecl136II GAGCTC 1 cut(s) 179
Eco24I GRGCYC 1 cut(s) 181
Eco32I GATATC 1 cut(s) 319
Eco53kI GAGCTC 1 cut(s) 179
EcoICRI GAGCTC 1 cut(s) 179
EcoRV GATATC 1 cut(s) 319
EcoT38I GRGCYC 1 cut(s) 181
FaeI CATG 1 cut(s) 344
FaiI YATR 4 cut(s) 18, 253, 270, 342
FatI CATG 1 cut(s) 340
Fnu4HI GCNGC 1 cut(s) 300
FokI GGATG 1 cut(s) 112
FriOI GRGCYC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 300
GluI GCNGC 1 cut(s) 300
HaeIII GGCC 1 cut(s) 134
Hin1II CATG 1 cut(s) 344
HphI GGTGA 1 cut(s) 238
Hpy166II GTNNAC 1 cut(s) 292
Hpy188I TCNGA 4 cut(s) 37, 176, 223, 371
Hpy188III TCNNGA 1 cut(s) 164
Hpy8I GTNNAC 1 cut(s) 292
HpyCH4III ACNGT 3 cut(s) 46, 194, 352
HpyCH4V TGCA 4 cut(s) 50, 86, 272, 299
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 176
HpyF3I CTNAG 2 cut(s) 173, 345
Hsp92II CATG 1 cut(s) 344
Kzo9I GATC 2 cut(s) 10, 223
LmnI GCTCC 1 cut(s) 62
LpnPI CCDG 3 cut(s) 45, 148, 240
Lsp1109I GCAGC 1 cut(s) 311
MaeIII GTNAC 1 cut(s) 55
MalI GATC 2 cut(s) 12, 225
MboI GATC 2 cut(s) 10, 223
MboII GAAGA 5 cut(s) 33, 36, 106, 179, 193
MhlI GDGCHC 1 cut(s) 181
MluCI AATT 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 15
MnlI CCTC 3 cut(s) 31, 90, 160
MseI TTAA 2 cut(s) 128, 312
MspA1I CMGCKG 1 cut(s) 302
MwoI GCNNNNNNNGC 2 cut(s) 167, 176
NdeII GATC 2 cut(s) 10, 223
NlaIII CATG 1 cut(s) 344
NlaIV GGNNCC 1 cut(s) 257
NmuCI GTSAC 1 cut(s) 55
NspI RCATGY 1 cut(s) 344
PkrI GCNGC 1 cut(s) 301
Psp124BI GAGCTC 1 cut(s) 181
PspN4I GGNNCC 1 cut(s) 257
PvuII CAGCTG 1 cut(s) 302
SacI GAGCTC 1 cut(s) 181
SaqAI TTAA 2 cut(s) 128, 312
SatI GCNGC 1 cut(s) 300
Sau3AI GATC 2 cut(s) 10, 223
SduI GDGCHC 1 cut(s) 181
SetI ASST 4 cut(s) 181, 187, 251, 304
SmlI CTYRAG 2 cut(s) 164, 180
SmoI CTYRAG 2 cut(s) 164, 180
Sse9I AATT 1 cut(s) 328
SsiI CCGC 1 cut(s) 104
SstI GAGCTC 1 cut(s) 181
TaaI ACNGT 3 cut(s) 46, 194, 352
TaqI TCGA 1 cut(s) 13
TasI AATT 1 cut(s) 328
Tru1I TTAA 2 cut(s) 128, 312
Tru9I TTAA 2 cut(s) 128, 312
TscAI CASTG 2 cut(s) 199, 357
TseFI GTSAC 1 cut(s) 55
TseI GCWGC 1 cut(s) 299
Tsp45I GTSAC 1 cut(s) 55
TspDTI ATGAA 2 cut(s) 339, 371
TspRI CASTG 2 cut(s) 199, 357
XapI RAATTY 1 cut(s) 328
XceI RCATGY 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.