pycom07g05900

Glycosyl transferases group 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
5215635 .. 5219014
3380 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1746 bp
ATGCAGGAGCCTTTTTGTTCAGTACCACTGATATGGATAATTCAAGAAGATACACTTGCAAATCGGCTTCCCGTGTATGAAGAAATGGGCTTGAAACATCTTACTTCTCATTGGAAAAGTGCTTTTAGCAGAGCTAACGTTGTCGTGTTTCCAGATTTCAGTCTGCCGATGTTATATAGTGTTCTTGACACTGGAAACTTCTTCGTCATTCCTGGATCACCAATAGATGTTTGGGCTGCGGAAAGCTACAGAAAAACCTACTCCAAGAATCAGTTGAGGAAGAGCAATGAGTTTAGTGAAGATGATATGCTGGTTGTAGTTGTTGGAAGTTCTTTTTTCTACGATGAGCTTTCATGGGACTATGCTGTGGCGATGCATTCTATAGGACCACTGCTAATAAAATATGCAAGGAGGGATGATGCAGGAAGGTTGTTCAAATTTGTTTTCTTATGTAGTAATTCCTCTGACGGATATGCTGATGCTTTCCAGGAAGCTGCTTCACATCTGGGACTTCTTCATGGATCTGTGCGGTATTATGGCTTGAATGGTGATGTCAACAGTGTGTTGTTGATGGCTGACATTGTTCTCTACGGTTCTACACAAGATGTACAAGGTTTTCCGCCATTGCTTATCCGTGCCATGACCTTTGGGATCCCAGTTATTGCGCCTGATTTTCATGTCTTGAAGGAATATGCGTCTGCTTTATTGTCTTTTACATTTGTGATATTACTGGTGGTTGATGGAGTTCACATTTTCTCGCTTATGATTTCAAATGGGAAACTTTCAAAATTTGCTAGAACGGTTGCTTCTTCTGGAAGACAGCTTGCTATGAACTTGCTGGCATCGGAATGCATAACCAGTTATGCAAGGCTTATGGAGAATGCGCTAAATTTTCCGTCAGATGCTCTGCTGCCAGGGCCAATCTCTCAGCTTCAACAGGAAGAAGACTTGTTGGGTTTTGGTTACTCACCAAACATCTCTGATAATGTAACTTGGGATTCATCATTAGATATTCCAACTCAATTAGATTGGGATCTCTTGAAGGAATTTGAAAGCTCTGAAGTATATGAGACGTTAGAAATGGAGGAGCTTAGATTTGAAGCAAATGAGAGGGATGAGGGTGAATTTGAGAGGACAGGCCAGACAATATGCATTTATGAGATATATAGCGGGTCTGGGACCTGGCCATTCTTGCACCACGGCTCTCTGTACCGTGGATTGAGCCTTGTGAGTTCCTTGCGTTTTGGAAGAAGCAATACAAGACAACACAAAAGGCGAAGTAATATACTTTTGGGGACGCTTGAACGTGAATGGTGGGAGTATAATTTTTGTCCACTCGAATGCAGAAACGTTTTTGAAGATGCATTTCGCTGGATGTATACCTTGCCATCTAATACAGAAGCTCTCCCTCCCATGCCAGAAGATGGTGGTCACTGGTCTGCCTTGCATAGTTGGGTGATGCCACCTCGCTCCTTCCTCGAGTTTATCATGTTTTCTCGAAAACATTGTTACTGTCGGGTATTAGAAGTCCTTGTGAATGTCTGGGCTTATCATAGTGGACGAAAGATGGTTTTAATAGATCCAGTTTCTGGTTCACTGGAAGAGCAGCATCCAGTTGAGCTACGGAAAGGATTTATGTGGGCCAAGTATTTTGATACTACATTGCTAAAGAGTATGGATGAAGATTTAGCAGAAGCCGCAGATGACGGTGATCACCGGGGAAGTGCATTGGGAAGGAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glycos_transf_1

Protein Analysis

582

Amino Acids

66.1

Weight (kDa)

5.0

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1424, 1589
AccI GTMKAC 1 cut(s) 1379
AciI CCGC 5 cut(s) 239, 529, 620, 1170, 1698
AclI AACGTT 2 cut(s) 138, 1350
AclWI GGATC 6 cut(s) 223, 529, 646, 659, 1041, 1574
AcoI YGGCCR 1 cut(s) 1184
AcsI RAATTY 6 cut(s) 437, 788, 889, 1046, 1124, 1738
AcuI CTGAAG 1 cut(s) 1080
AfaI GTAC 3 cut(s) 24, 609, 1211
AfiI CCNNNNNNNGG 2 cut(s) 1424, 1589
AjnI CCWGG 4 cut(s) 211, 486, 913, 1181
Alw26I GTCTC 1 cut(s) 1064
AlwI GGATC 6 cut(s) 223, 529, 646, 659, 1041, 1574
AlwNI CAGNNNCTG 1 cut(s) 1589
Ama87I CYCGRG 1 cut(s) 1478
AoxI GGCC 4 cut(s) 917, 1138, 1184, 1641
ApeKI GCWGC 4 cut(s) 236, 494, 910, 1606
ApoI RAATTY 6 cut(s) 437, 788, 889, 1046, 1124, 1738
AspLEI GCGC 2 cut(s) 667, 886
AspS9I GGNCC 4 cut(s) 386, 917, 1179, 1641
AsuC2I CCSGG 1 cut(s) 1718
AsuHPI GGTGA 7 cut(s) 210, 560, 960, 1133, 1468, 1706, 1721
AvaI CYCGRG 1 cut(s) 1478
AvaII GGWCC 2 cut(s) 386, 1179
BalI TGGCCA 1 cut(s) 1186
BamHI GGATCC 1 cut(s) 651
BarI GAAGNNNNNNTAC 2 cut(s) 1240, 1272
BbsI GAAGAC 2 cut(s) 823, 951
BbvI GCAGC 4 cut(s) 223, 481, 897, 1618
BccI CCATC 5 cut(s) 565, 734, 1396, 1418, 1561
BceAI ACGGC 1 cut(s) 1216
BciT130I CCWGG 4 cut(s) 213, 488, 915, 1183
BclI TGATCA 1 cut(s) 1711
BcnI CCSGG 1 cut(s) 1718
BcoDI GTCTC 1 cut(s) 1064
BfaI CTAG 1 cut(s) 795
BfmI CTRYAG 2 cut(s) 247, 381
BisI GCNGC 5 cut(s) 237, 495, 911, 1607, 1698
BlsI GCNGC 5 cut(s) 238, 496, 912, 1608, 1699
Bme1390I CCNGG 5 cut(s) 213, 488, 915, 1183, 1718
Bme18I GGWCC 2 cut(s) 386, 1179
BmeT110I CYCGRG 1 cut(s) 1478
BmgT120I GGNCC 4 cut(s) 386, 917, 1179, 1641
BmiI GGNNCC 3 cut(s) 9, 653, 1180
BmrFI CCNGG 5 cut(s) 213, 488, 915, 1183, 1718
BmrI ACTGGG 1 cut(s) 650
BmsI GCATC 8 cut(s) 363, 409, 469, 851, 892, 1351, 1449, 1618
BmuI ACTGGG 1 cut(s) 650
BpiI GAAGAC 2 cut(s) 823, 951
BpuMI CCSGG 1 cut(s) 1718
BsaBI GATNNNNATC 1 cut(s) 1032
BsaJI CCNNGG 4 cut(s) 914, 1198, 1213, 1717
Bsc4I CCNNNNNNNGG 2 cut(s) 1424, 1589
Bse1I ACTGG 8 cut(s) 196, 656, 735, 858, 1439, 1583, 1602, 1613
Bse3DI GCAATG 3 cut(s) 292, 623, 1661
Bse8I GATNNNNATC 1 cut(s) 1032
BseBI CCWGG 4 cut(s) 213, 488, 915, 1183
BseDI CCNNGG 4 cut(s) 914, 1198, 1213, 1717
BseGI GGATG 5 cut(s) 421, 1120, 1380, 1609, 1684
BseJI GATNNNNATC 1 cut(s) 1032
BseLI CCNNNNNNNGG 2 cut(s) 1424, 1589
BseMI GCAATG 3 cut(s) 292, 623, 1661
BseMII CTCAG 1 cut(s) 941
BseNI ACTGG 8 cut(s) 196, 656, 735, 858, 1439, 1583, 1602, 1613
BseRI GAGGAG 1 cut(s) 1100
BseXI GCAGC 4 cut(s) 223, 481, 897, 1618
BshFI GGCC 4 cut(s) 919, 1140, 1186, 1643
BsiHKCI CYCGRG 1 cut(s) 1478
BsiSI CCGG 1 cut(s) 1717
BslFI GGGAC 4 cut(s) 371, 522, 1192, 1309
BslI CCNNNNNNNGG 2 cut(s) 1424, 1589
BsmAI GTCTC 1 cut(s) 1064
BsmBI CGTCTC 1 cut(s) 1064
BsmFI GGGAC 4 cut(s) 371, 522, 1192, 1309
BsmI GAATGC 4 cut(s) 376, 854, 886, 1346
BsnI GGCC 4 cut(s) 919, 1140, 1186, 1643
BsoBI CYCGRG 1 cut(s) 1478
Bsp1407I TGTACA 1 cut(s) 607
Bsp143I GATC 6 cut(s) 215, 521, 651, 1033, 1579, 1711
BspACI CCGC 5 cut(s) 239, 529, 620, 1170, 1698
BspANI GGCC 4 cut(s) 919, 1140, 1186, 1643
BspCNI CTCAG 1 cut(s) 940
BspLI GGNNCC 3 cut(s) 9, 653, 1180
BspPI GGATC 6 cut(s) 223, 529, 646, 659, 1041, 1574
BspQI GCTCTTC 2 cut(s) 275, 1596
BsrDI GCAATG 3 cut(s) 292, 623, 1661
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 8 cut(s) 196, 656, 735, 858, 1439, 1583, 1602, 1613
BssECI CCNNGG 4 cut(s) 914, 1198, 1213, 1717
BssMI GATC 6 cut(s) 215, 521, 651, 1033, 1579, 1711
BssNAI GTATAC 1 cut(s) 1380
Bst1107I GTATAC 1 cut(s) 1380
Bst2UI CCWGG 4 cut(s) 213, 488, 915, 1183
Bst4CI ACNGT 6 cut(s) 560, 593, 802, 1214, 1514, 1709
Bst6I CTCTTC 2 cut(s) 275, 1596
BstAUI TGTACA 1 cut(s) 607
BstC8I GCNNGC 2 cut(s) 825, 840
BstDEI CTNAG 2 cut(s) 927, 1091
BstDSI CCRYGG 2 cut(s) 1198, 1213
BstF5I GGATG 5 cut(s) 421, 1120, 1380, 1609, 1684
BstHHI GCGC 2 cut(s) 667, 886
BstKTI GATC 6 cut(s) 218, 524, 654, 1036, 1582, 1714
BstMAI GTCTC 1 cut(s) 1064
BstMBI GATC 6 cut(s) 215, 521, 651, 1033, 1579, 1711
BstMWI GCNNNNNNNGC 3 cut(s) 916, 1192, 1697
BstNI CCWGG 4 cut(s) 213, 488, 915, 1183
BstSCI CCNGG 5 cut(s) 211, 486, 913, 1181, 1716
BstSFI CTRYAG 2 cut(s) 247, 381
BstV1I GCAGC 4 cut(s) 223, 481, 897, 1618
BstV2I GAAGAC 2 cut(s) 823, 951
BstX2I RGATCY 4 cut(s) 521, 651, 1033, 1579
BstXI CCANNNNNNTGG 1 cut(s) 33
BstYI RGATCY 4 cut(s) 521, 651, 1033, 1579
BstZ17I GTATAC 1 cut(s) 1380
BsuRI GGCC 4 cut(s) 919, 1140, 1186, 1643
BtgI CCRYGG 2 cut(s) 1198, 1213
BtgZI GCGATG 1 cut(s) 386
BtsCI GGATG 5 cut(s) 421, 1120, 1380, 1609, 1684
BtsI GCAGTG 1 cut(s) 389
BtsIMutI CAGTG 6 cut(s) 26, 189, 389, 565, 1432, 1595
Cac8I GCNNGC 2 cut(s) 825, 840
CaiI CAGNNNCTG 1 cut(s) 1589
CfoI GCGC 2 cut(s) 667, 886
Cfr13I GGNCC 4 cut(s) 386, 917, 1179, 1641
CseI GACGC 2 cut(s) 684, 1306
Csp6I GTAC 3 cut(s) 23, 608, 1210
CviAII CATG 6 cut(s) 354, 518, 640, 677, 1414, 1489
CviQI GTAC 3 cut(s) 23, 608, 1210
DdeI CTNAG 2 cut(s) 927, 1091
DpnI GATC 6 cut(s) 217, 523, 653, 1035, 1581, 1713
DpnII GATC 6 cut(s) 215, 521, 651, 1033, 1579, 1711
EaeI YGGCCR 1 cut(s) 1184
Eam1104I CTCTTC 2 cut(s) 275, 1596
EarI CTCTTC 2 cut(s) 275, 1596
EciI GGCGGA 1 cut(s) 609
Eco47I GGWCC 2 cut(s) 386, 1179
Eco57I CTGAAG 1 cut(s) 1080
Eco88I CYCGRG 1 cut(s) 1478
EcoO109I RGGNCCY 1 cut(s) 1179
EcoRII CCWGG 4 cut(s) 211, 486, 913, 1181
EcoT22I ATGCAT 4 cut(s) 378, 854, 1154, 1366
Esp3I CGTCTC 1 cut(s) 1064
FaeI CATG 6 cut(s) 357, 521, 643, 680, 1417, 1492
FalI AAGNNNNNCTT 2 cut(s) 39, 71
FaqI GGGAC 4 cut(s) 371, 522, 1192, 1309
FatI CATG 6 cut(s) 353, 517, 639, 676, 1413, 1488
FauI CCCGC 1 cut(s) 1163
FbaI TGATCA 1 cut(s) 1711
FblI GTMKAC 1 cut(s) 1379
Fnu4HI GCNGC 5 cut(s) 237, 495, 911, 1607, 1698
FokI GGATG 5 cut(s) 428, 1127, 1387, 1596, 1691
Fsp4HI GCNGC 5 cut(s) 237, 495, 911, 1607, 1698
FspBI CTAG 1 cut(s) 795
GlaI GCGC 2 cut(s) 666, 885
GluI GCNGC 5 cut(s) 237, 495, 911, 1607, 1698
HaeIII GGCC 4 cut(s) 919, 1140, 1186, 1643
HapII CCGG 1 cut(s) 1717
HgaI GACGC 2 cut(s) 684, 1306
HhaI GCGC 2 cut(s) 667, 886
Hin1II CATG 6 cut(s) 357, 521, 643, 680, 1417, 1492
Hin6I GCGC 2 cut(s) 665, 884
HinP1I GCGC 2 cut(s) 665, 884
HincII GTYRAC 1 cut(s) 556
HindII GTYRAC 1 cut(s) 556
HinfI GANTC 2 cut(s) 268, 998
HpaII CCGG 1 cut(s) 1717
HphI GGTGA 7 cut(s) 210, 560, 960, 1133, 1468, 1706, 1721
Hpy166II GTNNAC 6 cut(s) 556, 748, 1334, 1380, 1559, 1595
Hpy188I TCNGA 5 cut(s) 466, 847, 901, 982, 1060
Hpy188III TCNNGA 7 cut(s) 44, 152, 185, 682, 813, 1039, 1497
Hpy8I GTNNAC 6 cut(s) 556, 748, 1334, 1380, 1559, 1595
HpyAV CCTTC 5 cut(s) 420, 679, 1036, 1483, 1728
HpyCH4III ACNGT 6 cut(s) 560, 593, 802, 1214, 1514, 1709
HpyCH4IV ACGT 4 cut(s) 138, 1073, 1306, 1350
HpyF10VI GCNNNNNNNGC 3 cut(s) 916, 1192, 1697
HpyF3I CTNAG 2 cut(s) 927, 1091
HpySE526I ACGT 4 cut(s) 138, 1073, 1306, 1350
Hsp92II CATG 6 cut(s) 357, 521, 643, 680, 1417, 1492
HspAI GCGC 2 cut(s) 665, 884
Ksp22I TGATCA 1 cut(s) 1711
Kzo9I GATC 6 cut(s) 215, 521, 651, 1033, 1579, 1711
LguI GCTCTTC 2 cut(s) 275, 1596
LmnI GCTCC 3 cut(s) 7, 1087, 1475
Lsp1109I GCAGC 4 cut(s) 223, 481, 897, 1618
LweI GCATC 8 cut(s) 363, 409, 469, 851, 892, 1351, 1449, 1618
MaeI CTAG 1 cut(s) 795
MaeII ACGT 4 cut(s) 138, 1073, 1306, 1350
MaeIII GTNAC 4 cut(s) 962, 988, 1430, 1508
MalI GATC 6 cut(s) 217, 523, 653, 1035, 1581, 1713
MboI GATC 6 cut(s) 215, 521, 651, 1033, 1579, 1711
MflI RGATCY 4 cut(s) 521, 651, 1033, 1579
MlsI TGGCCA 1 cut(s) 1186
MluNI TGGCCA 1 cut(s) 1186
MmeI TCCRAC 2 cut(s) 304, 1040
Mox20I TGGCCA 1 cut(s) 1186
Mph1103I ATGCAT 4 cut(s) 378, 854, 1154, 1366
MscI TGGCCA 1 cut(s) 1186
MseI TTAA 1 cut(s) 1574
MslI CAYNNNNRTG 3 cut(s) 31, 847, 1339
Msp20I TGGCCA 1 cut(s) 1186
MspI CCGG 1 cut(s) 1717
MspR9I CCNGG 5 cut(s) 213, 488, 915, 1183, 1718
Mva1269I GAATGC 4 cut(s) 376, 854, 886, 1346
MvaI CCWGG 4 cut(s) 213, 488, 915, 1183
MwoI GCNNNNNNNGC 3 cut(s) 916, 1192, 1697
NciI CCSGG 1 cut(s) 1718
NdeII GATC 6 cut(s) 215, 521, 651, 1033, 1579, 1711
NlaIII CATG 6 cut(s) 357, 521, 643, 680, 1417, 1492
NlaIV GGNNCC 3 cut(s) 9, 653, 1180
NmuCI GTSAC 1 cut(s) 1430
NsiI ATGCAT 4 cut(s) 378, 854, 1154, 1366
PaeR7I CTCGAG 1 cut(s) 1478
PciSI GCTCTTC 2 cut(s) 275, 1596
PctI GAATGC 4 cut(s) 376, 854, 886, 1346
PfeI GAWTC 2 cut(s) 268, 998
PflMI CCANNNNNTGG 2 cut(s) 1424, 1589
PfoI TCCNGGA 2 cut(s) 211, 486
PkrI GCNGC 5 cut(s) 238, 496, 912, 1608, 1699
PpuMI RGGWCCY 1 cut(s) 1179
Psp1406I AACGTT 2 cut(s) 138, 1350
Psp5II RGGWCCY 1 cut(s) 1179
Psp6I CCWGG 4 cut(s) 211, 486, 913, 1181
PspGI CCWGG 4 cut(s) 211, 486, 913, 1181
PspN4I GGNNCC 3 cut(s) 9, 653, 1180
PspPI GGNCC 4 cut(s) 386, 917, 1179, 1641
PspPPI RGGWCCY 1 cut(s) 1179
PspXI VCTCGAGB 1 cut(s) 1478
PstNI CAGNNNCTG 1 cut(s) 1589
PsuI RGATCY 4 cut(s) 521, 651, 1033, 1579
RsaI GTAC 3 cut(s) 24, 609, 1211
RsaNI GTAC 3 cut(s) 23, 608, 1210
RseI CAYNNNNRTG 3 cut(s) 31, 847, 1339
SapI GCTCTTC 2 cut(s) 275, 1596
SaqAI TTAA 1 cut(s) 1574
SatI GCNGC 5 cut(s) 237, 495, 911, 1607, 1698
Sau3AI GATC 6 cut(s) 215, 521, 651, 1033, 1579, 1711
Sau96I GGNCC 4 cut(s) 386, 917, 1179, 1641
ScrFI CCNGG 5 cut(s) 213, 488, 915, 1183, 1718
SfaNI GCATC 8 cut(s) 363, 409, 469, 851, 892, 1351, 1449, 1618
SfcI CTRYAG 2 cut(s) 247, 381
Sfr274I CTCGAG 1 cut(s) 1478
SinI GGWCC 2 cut(s) 386, 1179
SlaI CTCGAG 1 cut(s) 1478
SmiMI CAYNNNNRTG 3 cut(s) 31, 847, 1339
SmlI CTYRAG 1 cut(s) 1478
SmoI CTYRAG 1 cut(s) 1478
SsiI CCGC 5 cut(s) 239, 529, 620, 1170, 1698
SspMI CTAG 1 cut(s) 795
StyD4I CCNGG 5 cut(s) 211, 486, 913, 1181, 1716
TaaI ACNGT 6 cut(s) 560, 593, 802, 1214, 1514, 1709
TaiI ACGT 4 cut(s) 141, 1076, 1309, 1353
TaqI TCGA 3 cut(s) 1338, 1479, 1498
TatI WGTACW 1 cut(s) 607
TauI GCSGC 1 cut(s) 1700
TfiI GAWTC 2 cut(s) 268, 998
Tru1I TTAA 1 cut(s) 1574
Tru9I TTAA 1 cut(s) 1574
TscAI CASTG 6 cut(s) 33, 196, 396, 565, 1439, 1602
TseFI GTSAC 1 cut(s) 1430
TseI GCWGC 4 cut(s) 236, 494, 910, 1606
Tsp45I GTSAC 1 cut(s) 1430
TspDTI ATGAA 7 cut(s) 93, 342, 506, 665, 845, 990, 1695
TspGWI ACGGA 4 cut(s) 483, 623, 885, 1639
TspRI CASTG 6 cut(s) 33, 196, 396, 565, 1439, 1602
Van91I CCANNNNNTGG 2 cut(s) 1424, 1589
VpaK11BI GGWCC 2 cut(s) 386, 1179
XapI RAATTY 6 cut(s) 437, 788, 889, 1046, 1124, 1738
XcmI CCANNNNNNNNNTGG 1 cut(s) 228
XhoI CTCGAG 1 cut(s) 1478
XmiI GTMKAC 1 cut(s) 1379
XspI CTAG 1 cut(s) 795
Zsp2I ATGCAT 4 cut(s) 378, 854, 1154, 1366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.