Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6327580 .. 6329780

Gene Structure 2201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGTCGAACTTCAACTCGCCGATCAGGCTGTCGTCGTCCGTCGTCAAACACCTCAAGAGGTACAGAGTGAGGGGAACGGGCACCAATCCTCTGCTCCCGCACTCGAGATCATTCACTACAACCGAGGGCCACCGCCCGATCATCGTCCACAAGCGCAGCCTCGACATTCTTCACGATCCCTGGTTCAATAAAGGGACGTCATTTTCCTTCACAGAACGAGATCGTCTTGATCTTCGGGGACTTCTCCCTCCCAACGTTATGTCTACCGAGCATCAAATTGAACGCTTCATGGTTGACCTGAAGAGACTTGAAGAGCAAGTAAGAGATGGACCATTTGATCCAAATGCGCTGGCCAAGTGGCGGATACTTAACCGGTTGCATGACAGAAATGAGACAATGTATTACAAAGTGAGTTTTGATTGCCAATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0004470 GO:0004471 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0006082 GO:0006090 GO:0006108 GO:0006950 GO:0006970 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009507 GO:0009536 GO:0009628 GO:0009651 GO:0009987 GO:0016491 GO:0016614 GO:0016615 GO:0016616 GO:0017076 GO:0019752 GO:0030554 GO:0031974 GO:0032553 GO:0032555 GO:0032559 GO:0032787 GO:0035639 GO:0036094 GO:0042802 GO:0042803 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043648 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0046914 GO:0046983 GO:0050896 GO:0050897 GO:0055114 GO:0070013 GO:0071704 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00620 ko00710 ko01100 ko01120 ko01200 map00620 map00710 map01100 map01120 map01200

Pfam Domains

Protein Families

Malic_M malic

Protein Analysis

144

Amino Acids

16.92

Weight (kDa)

9.92

Isoelectric Point (pI)

50.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	200
AccB1I	GGYRCC	1 cut(s)	80
AccI	GTMKAC	1 cut(s)	263
AciI	CCGC	3 cut(s)	98, 133, 361
AclI	AACGTT	1 cut(s)	255
AclWI	GGATC	2 cut(s)	170, 332
AcoI	YGGCCR	1 cut(s)	351
AcuI	CTGAAG	1 cut(s)	320
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	1 cut(s)	62
AfiI	CCNNNNNNNGG	1 cut(s)	360
AgeI	ACCGGT	1 cut(s)	372
AgsI	TTSAA	4 cut(s)	13, 187, 281, 311
AjnI	CCWGG	1 cut(s)	179
Alw26I	GTCTC	2 cut(s)	298, 386
AlwI	GGATC	2 cut(s)	170, 332
Ama87I	CYCGRG	1 cut(s)	103
AoxI	GGCC	2 cut(s)	127, 351
ApeKI	GCWGC	1 cut(s)	156
AsiGI	ACCGGT	1 cut(s)	372
AspLEI	GCGC	2 cut(s)	156, 349
AspS9I	GGNCC	2 cut(s)	127, 329
AvaI	CYCGRG	1 cut(s)	103
AvaII	GGWCC	1 cut(s)	329
BaeGI	GKGCMC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	353
BanI	GGYRCC	1 cut(s)	80
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	1 cut(s)	320
BciT130I	CCWGG	1 cut(s)	181
BciVI	GTATCC	1 cut(s)	357
BcoDI	GTCTC	2 cut(s)	298, 386
BfuI	GTATCC	1 cut(s)	357
BglI	GCCNNNNNGGC	1 cut(s)	25
BisI	GCNGC	1 cut(s)	157
BlsI	GCNGC	1 cut(s)	158
Bme1390I	CCNGG	1 cut(s)	181
Bme18I	GGWCC	1 cut(s)	329
BmeT110I	CYCGRG	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	127, 329
BmiI	GGNNCC	1 cut(s)	82
BmrFI	CCNGG	1 cut(s)	181
BmsI	GCATC	1 cut(s)	280
BpuEI	CTTGAG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	2 cut(s)	123, 179
BsaWI	WCCGGW	1 cut(s)	372
Bsc4I	CCNNNNNNNGG	1 cut(s)	360
Bse118I	RCCGGY	1 cut(s)	372
BseBI	CCWGG	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	123, 179
BseLI	CCNNNNNNNGG	1 cut(s)	360
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	168
BshFI	GGCC	2 cut(s)	129, 353
BshNI	GGYRCC	1 cut(s)	80
BshTI	ACCGGT	1 cut(s)	372
BsiHKCI	CYCGRG	1 cut(s)	103
BsiSI	CCGG	1 cut(s)	373
BslFI	GGGAC	2 cut(s)	208, 252
BslI	CCNNNNNNNGG	1 cut(s)	360
BsmAI	GTCTC	2 cut(s)	298, 386
BsmFI	GGGAC	2 cut(s)	208, 252
BsnI	GGCC	2 cut(s)	129, 353
BsoBI	CYCGRG	1 cut(s)	103
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	7 cut(s)	21, 107, 138, 175, 220, 229, 337
BspACI	CCGC	3 cut(s)	98, 133, 361
BspANI	GGCC	2 cut(s)	129, 353
BspLI	GGNNCC	1 cut(s)	82
BspPI	GGATC	2 cut(s)	170, 332
BspQI	GCTCTTC	1 cut(s)	306
BspT107I	GGYRCC	1 cut(s)	80
BsrFI	RCCGGY	1 cut(s)	372
BssAI	RCCGGY	1 cut(s)	372
BssECI	CCNNGG	2 cut(s)	123, 179
BssMI	GATC	7 cut(s)	21, 107, 138, 175, 220, 229, 337
BssNI	GRCGYC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	181
Bst6I	CTCTTC	2 cut(s)	296, 306
BstACI	GRCGYC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	351
BstHHI	GCGC	2 cut(s)	156, 349
BstKTI	GATC	7 cut(s)	24, 110, 141, 178, 223, 232, 340
BstMAI	GTCTC	2 cut(s)	298, 386
BstMBI	GATC	7 cut(s)	21, 107, 138, 175, 220, 229, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	25
BstNI	CCWGG	1 cut(s)	181
BstSCI	CCNGG	1 cut(s)	179
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	357
BsuRI	GGCC	2 cut(s)	129, 353
Cac8I	GCNNGC	1 cut(s)	351
CfoI	GCGC	2 cut(s)	156, 349
Cfr10I	RCCGGY	1 cut(s)	372
Cfr13I	GGNCC	2 cut(s)	127, 329
Csp6I	GTAC	1 cut(s)	61
CspAI	ACCGGT	1 cut(s)	372
CviAII	CATG	2 cut(s)	289, 380
CviJI	RGCY	4 cut(s)	28, 129, 159, 353
CviKI_1	RGCY	4 cut(s)	28, 129, 159, 353
CviQI	GTAC	1 cut(s)	61
DpnI	GATC	7 cut(s)	23, 109, 140, 177, 222, 231, 339
DpnII	GATC	7 cut(s)	21, 107, 138, 175, 220, 229, 337
EaeI	YGGCCR	1 cut(s)	351
Eam1104I	CTCTTC	2 cut(s)	296, 306
EarI	CTCTTC	2 cut(s)	296, 306
EciI	GGCGGA	1 cut(s)	376
Eco47I	GGWCC	1 cut(s)	329
Eco57I	CTGAAG	1 cut(s)	320
Eco88I	CYCGRG	1 cut(s)	103
EcoRII	CCWGG	1 cut(s)	179
FaeI	CATG	2 cut(s)	292, 383
FaiI	YATR	3 cut(s)	260, 290, 381
FaqI	GGGAC	2 cut(s)	208, 252
FatI	CATG	2 cut(s)	288, 379
FauI	CCCGC	1 cut(s)	105
FblI	GTMKAC	1 cut(s)	263
Fnu4HI	GCNGC	1 cut(s)	157
Fsp4HI	GCNGC	1 cut(s)	157
GlaI	GCGC	2 cut(s)	155, 348
GluI	GCNGC	1 cut(s)	157
HaeIII	GGCC	2 cut(s)	129, 353
HapII	CCGG	1 cut(s)	373
HhaI	GCGC	2 cut(s)	156, 349
Hin1I	GRCGYC	1 cut(s)	197
Hin1II	CATG	2 cut(s)	292, 383
Hin6I	GCGC	2 cut(s)	154, 347
HinP1I	GCGC	2 cut(s)	154, 347
HincII	GTYRAC	1 cut(s)	295
HindII	GTYRAC	1 cut(s)	295
HpaII	CCGG	1 cut(s)	373
Hpy166II	GTNNAC	3 cut(s)	148, 264, 295
Hpy188III	TCNNGA	4 cut(s)	55, 105, 173, 227
Hpy8I	GTNNAC	3 cut(s)	148, 264, 295
Hpy99I	CGWCG	2 cut(s)	37, 44
HpyAV	CCTTC	1 cut(s)	217
HpyCH4IV	ACGT	2 cut(s)	197, 255
HpyCH4V	TGCA	1 cut(s)	379
HpyF10VI	GCNNNNNNNGC	1 cut(s)	25
HpySE526I	ACGT	2 cut(s)	197, 255
Hsp92I	GRCGYC	1 cut(s)	197
Hsp92II	CATG	2 cut(s)	292, 383
HspAI	GCGC	2 cut(s)	154, 347
Kzo9I	GATC	7 cut(s)	21, 107, 138, 175, 220, 229, 337
LguI	GCTCTTC	1 cut(s)	306
LmnI	GCTCC	1 cut(s)	99
LpnPI	CCDG	6 cut(s)	10, 166, 193, 311, 335, 386
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	1 cut(s)	280
MaeII	ACGT	2 cut(s)	197, 255
MalI	GATC	7 cut(s)	23, 109, 140, 177, 222, 231, 339
MboI	GATC	7 cut(s)	21, 107, 138, 175, 220, 229, 337
MboII	GAAGA	4 cut(s)	161, 224, 313, 323
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	353
MluCI	AATT	1 cut(s)	276
MluNI	TGGCCA	1 cut(s)	353
MnlI	CCTC	7 cut(s)	51, 62, 63, 99, 118, 170, 258
Mox20I	TGGCCA	1 cut(s)	353
MscI	TGGCCA	1 cut(s)	353
MseI	TTAA	1 cut(s)	369
Msp20I	TGGCCA	1 cut(s)	353
MspI	CCGG	1 cut(s)	373
MspR9I	CCNGG	1 cut(s)	181
MvaI	CCWGG	1 cut(s)	181
MwoI	GCNNNNNNNGC	1 cut(s)	25
NdeII	GATC	7 cut(s)	21, 107, 138, 175, 220, 229, 337
NlaIII	CATG	2 cut(s)	292, 383
NlaIV	GGNNCC	1 cut(s)	82
PaeR7I	CTCGAG	1 cut(s)	103
PciSI	GCTCTTC	1 cut(s)	306
PinAI	ACCGGT	1 cut(s)	372
PkrI	GCNGC	1 cut(s)	158
Psp1406I	AACGTT	1 cut(s)	255
Psp6I	CCWGG	1 cut(s)	179
PspGI	CCWGG	1 cut(s)	179
PspN4I	GGNNCC	1 cut(s)	82
PspPI	GGNCC	2 cut(s)	127, 329
RsaI	GTAC	1 cut(s)	62
RsaNI	GTAC	1 cut(s)	61
SapI	GCTCTTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	369
SatI	GCNGC	1 cut(s)	157
Sau3AI	GATC	7 cut(s)	21, 107, 138, 175, 220, 229, 337
Sau96I	GGNCC	2 cut(s)	127, 329
ScrFI	CCNGG	1 cut(s)	181
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	5 cut(s)	54, 62, 200, 258, 300
SfaNI	GCATC	1 cut(s)	280
Sfr274I	CTCGAG	1 cut(s)	103
SinI	GGWCC	1 cut(s)	329
SlaI	CTCGAG	1 cut(s)	103
SmlI	CTYRAG	2 cut(s)	53, 103
SmoI	CTYRAG	2 cut(s)	53, 103
Sse9I	AATT	1 cut(s)	276
SsiI	CCGC	3 cut(s)	98, 133, 361
SspI	AATATT	1 cut(s)	428
StyD4I	CCNGG	1 cut(s)	179
TaiI	ACGT	2 cut(s)	200, 258
TaqI	TCGA	3 cut(s)	5, 104, 162
TasI	AATT	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	369
Tru9I	TTAA	1 cut(s)	369
TseI	GCWGC	1 cut(s)	156
TspDTI	ATGAA	1 cut(s)	277
TspGWI	ACGGA	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	329
XhoI	CTCGAG	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	263
ZraI	GACGTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.