Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

6387470 .. 6387978

Gene Structure 509 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGAGGATTCATATTCAGTGTGCAGCCCCAGAAGAATACTGAGTGTATCAAAGAAGAGGAGGGCAACAGTGTCATTTGTTGATTCAGATGACAAGGCTTCTGGGTTTCATGGCCCCAAGCCTTCTGAAGTCTATGGCTTTGTTGGCTCCATCACTACTGTTGTGGCTACAGTTATATTCTTGGTGTGGGCGTATGTTCCAGAGTCTTGGCTGCATTCCATTGGGATTTATTACTATCCCAGCAGGTCCCCCTTTTGCTTTCAGTTTCAATCGTATATGGTTTTTGAGTTTTCGTTGAGATTATTATCCGCCATCAGTTCTGTTCTTTTGTTGTTTCAAAGGATTAGACGATTAGCTAATCATAACTTTGATCATGTTTTGTCATATCTAGGGGAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0012505 GO:0016020 GO:0031984 GO:0032991 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0098796 GO:0098827 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00563 ko01100 map00563 map01100

Pfam Domains

Protein Families

PIG-P

Protein Analysis

134

Amino Acids

15.27

Weight (kDa)

8.97

Isoelectric Point (pI)

58.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PIG-P	PF08510	42 - 109	5.8e-16	PIG-P

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	234
AciI	CCGC	1 cut(s)	309
AcuI	CTGAAG	1 cut(s)	147
AgsI	TTSAA	2 cut(s)	269, 338
AluBI	AGCT	1 cut(s)	356
AluI	AGCT	1 cut(s)	356
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	2 cut(s)	24, 211
AspS9I	GGNCC	2 cut(s)	113, 246
AvaII	GGWCC	1 cut(s)	246
BbvI	GCAGC	2 cut(s)	36, 198
BccI	CCATC	2 cut(s)	158, 320
BclI	TGATCA	1 cut(s)	370
BfaI	CTAG	1 cut(s)	389
BfmI	CTRYAG	1 cut(s)	168
BfuAI	ACCTGC	1 cut(s)	234
BisI	GCNGC	2 cut(s)	25, 212
BlsI	GCNGC	2 cut(s)	26, 213
Bme18I	GGWCC	1 cut(s)	246
BmgT120I	GGNCC	2 cut(s)	113, 246
BmiI	GGNNCC	3 cut(s)	115, 148, 248
BsaBI	GATNNNNATC	1 cut(s)	304
Bse8I	GATNNNNATC	1 cut(s)	304
BseJI	GATNNNNATC	1 cut(s)	304
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	73
BseXI	GCAGC	2 cut(s)	36, 198
BseYI	CCCAGC	1 cut(s)	239
BsgI	GTGCAG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	232
BsmI	GAATGC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	114
Bsp143I	GATC	1 cut(s)	370
BspACI	CCGC	1 cut(s)	309
BspANI	GGCC	1 cut(s)	114
BspCNI	CTCAG	1 cut(s)	33
BspLI	GGNNCC	3 cut(s)	115, 148, 248
BspMI	ACCTGC	1 cut(s)	234
BssMI	GATC	1 cut(s)	370
Bst4CI	ACNGT	3 cut(s)	70, 160, 172
Bst6I	CTCTTC	1 cut(s)	50
BstDEI	CTNAG	1 cut(s)	41
BstKTI	GATC	1 cut(s)	373
BstMBI	GATC	1 cut(s)	370
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstSFI	CTRYAG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	36, 198
BstXI	CCANNNNNNTGG	1 cut(s)	207
BsuRI	GGCC	1 cut(s)	114
BtsIMutI	CAGTG	2 cut(s)	24, 75
BveI	ACCTGC	1 cut(s)	234
Cfr13I	GGNCC	2 cut(s)	113, 246
CviAII	CATG	2 cut(s)	110, 374
CviJI	RGCY	9 cut(s)	27, 98, 114, 121, 138, 147, 167, 211, 356
CviKI_1	RGCY	9 cut(s)	27, 98, 114, 121, 138, 147, 167, 211, 356
DdeI	CTNAG	1 cut(s)	41
DpnI	GATC	1 cut(s)	372
DpnII	GATC	1 cut(s)	370
Eam1104I	CTCTTC	1 cut(s)	50
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	298
Eco47I	GGWCC	1 cut(s)	246
Eco57I	CTGAAG	1 cut(s)	147
EcoO109I	RGGNCCY	1 cut(s)	246
FaeI	CATG	2 cut(s)	113, 377
FaqI	GGGAC	1 cut(s)	232
FatI	CATG	2 cut(s)	109, 373
FbaI	TGATCA	1 cut(s)	370
Fnu4HI	GCNGC	2 cut(s)	25, 212
Fsp4HI	GCNGC	2 cut(s)	25, 212
FspBI	CTAG	1 cut(s)	389
GluI	GCNGC	2 cut(s)	25, 212
GsaI	CCCAGC	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	114
Hin1II	CATG	2 cut(s)	113, 377
HinfI	GANTC	3 cut(s)	8, 83, 203
Hpy188I	TCNGA	2 cut(s)	88, 127
Hpy188III	TCNNGA	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	132
HpyCH4III	ACNGT	3 cut(s)	70, 160, 172
HpyCH4V	TGCA	2 cut(s)	24, 214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	1 cut(s)	41
Hsp92II	CATG	2 cut(s)	113, 377
Ksp22I	TGATCA	1 cut(s)	370
Kzo9I	GATC	1 cut(s)	370
LmnI	GCTCC	1 cut(s)	152
LpnPI	CCDG	5 cut(s)	43, 87, 213, 229, 253
Lsp1109I	GCAGC	2 cut(s)	36, 198
MaeI	CTAG	1 cut(s)	389
MalI	GATC	1 cut(s)	372
MboI	GATC	1 cut(s)	370
MboII	GAAGA	2 cut(s)	45, 67
MlyI	GAGTC	1 cut(s)	212
MnlI	CCTC	2 cut(s)	51, 54
Mva1269I	GAATGC	1 cut(s)	214
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	1 cut(s)	370
NlaIII	CATG	2 cut(s)	113, 377
NlaIV	GGNNCC	3 cut(s)	115, 148, 248
PctI	GAATGC	1 cut(s)	214
PfeI	GAWTC	2 cut(s)	8, 83
PkrI	GCNGC	2 cut(s)	26, 213
PleI	GAGTC	1 cut(s)	211
PpsI	GAGTC	1 cut(s)	211
PpuMI	RGGWCCY	1 cut(s)	246
Psp5II	RGGWCCY	1 cut(s)	246
PspFI	CCCAGC	1 cut(s)	239
PspN4I	GGNNCC	3 cut(s)	115, 148, 248
PspPI	GGNCC	2 cut(s)	113, 246
PspPPI	RGGWCCY	1 cut(s)	246
SatI	GCNGC	2 cut(s)	25, 212
Sau3AI	GATC	1 cut(s)	370
Sau96I	GGNCC	2 cut(s)	113, 246
SchI	GAGTC	1 cut(s)	212
SetI	ASST	2 cut(s)	248, 358
SfcI	CTRYAG	1 cut(s)	168
SinI	GGWCC	1 cut(s)	246
SsiI	CCGC	1 cut(s)	309
SspMI	CTAG	1 cut(s)	389
TaaI	ACNGT	3 cut(s)	70, 160, 172
TfiI	GAWTC	2 cut(s)	8, 83
TscAI	CASTG	2 cut(s)	24, 75
TseI	GCWGC	2 cut(s)	24, 211
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	2 cut(s)	24, 75
VpaK11BI	GGWCC	1 cut(s)	246
XspI	CTAG	1 cut(s)	389

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.