Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

6893332 .. 6893974

Gene Structure 643 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTTTAATGGGCCAAAACTGACTATAAGCCCACAACGGCCTCAAAAAATCCTATACCCATTTCCTCCTCTATTTCCACTTGCCGAAACGGCAGAAGCGATTTCCGAAACCCAAACCAAAACCTCTACTCGAACTCCACCCTCTCTCTCTCTCTCTCTCTCTCTCCGACCCTGCGAGACCCGAGCGACCCTTCAATCCGCCACCATGCTGCGCCGAGCCACCACCCTCTTGACCCGATCCACGATCCCCCTCAGGGCCCGACCCTTCTCCACCGACGTCGCTGAGACTGCCCCAGCCGATTCGACTTTCAGTGACGCCTGGAAGAAAGTGGTGCCTCACATAGATCCCCCAAGGACCCCATTGACCTTCATGAAACCTAGGCCTGTAACCCCGTCATCGATCCCCACTAAGCTGACTGTCAATTTTGTGCTCCCTTATGCGTCCGAACTTTCGGCGAAAGAGGTCAGTTTTCGGAGATTTGTTGTTGTGGGTTTATCTGGGTTTGGTGCTAATTGTGATTTTCAGGCCGCATTTGTTGTCTCTAGTTTGAATTGGGTATTCTGTTGTTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_DE_N

Protein Analysis

191

Amino Acids

20.94

Weight (kDa)

9.89

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	279
AccB1I	GGYRCC	1 cut(s)	331
AciI	CCGC	2 cut(s)	198, 528
AclWI	GGATC	4 cut(s)	231, 238, 338, 394
AcyI	GRCGYC	2 cut(s)	276, 315
AfiI	CCNNNNNNNGG	1 cut(s)	253
AgsI	TTSAA	2 cut(s)	194, 550
AjnI	CCWGG	1 cut(s)	317
AluBI	AGCT	1 cut(s)	412
AluI	AGCT	1 cut(s)	412
Alw21I	GWGCWC	1 cut(s)	432
Alw26I	GTCTC	3 cut(s)	170, 278, 544
AlwI	GGATC	4 cut(s)	231, 238, 338, 394
Ama87I	CYCGRG	1 cut(s)	180
AoxI	GGCC	5 cut(s)	11, 38, 255, 380, 525
ApaI	GGGCCC	1 cut(s)	259
ApeKI	GCWGC	1 cut(s)	208
AspA2I	CCTAGG	1 cut(s)	377
AspLEI	GCGC	1 cut(s)	213
AspS9I	GGNCC	4 cut(s)	11, 255, 256, 354
AvaI	CYCGRG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	354
AvrII	CCTAGG	1 cut(s)	377
AxyI	CCTNAGG	1 cut(s)	251
BaeGI	GKGCMC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	432
BbvI	GCAGC	1 cut(s)	195
BceAI	ACGGC	2 cut(s)	53, 105
BciT130I	CCWGG	1 cut(s)	319
BcoDI	GTCTC	3 cut(s)	170, 278, 544
BfaI	CTAG	2 cut(s)	378, 543
BglI	GCCNNNNNGGC	1 cut(s)	89
BisI	GCNGC	2 cut(s)	209, 528
BlnI	CCTAGG	1 cut(s)	377
BlsI	GCNGC	2 cut(s)	210, 529
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	354
BmeT110I	CYCGRG	1 cut(s)	180
BmgT120I	GGNCC	4 cut(s)	11, 255, 256, 354
BmiI	GGNNCC	3 cut(s)	257, 333, 356
BmrFI	CCNGG	1 cut(s)	319
Bsa29I	ATCGAT	1 cut(s)	398
BsaHI	GRCGYC	2 cut(s)	276, 315
BsaI	GGTCTC	1 cut(s)	170
BsaJI	CCNNGG	2 cut(s)	350, 377
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	1 cut(s)	253
Bse21I	CCTNAGG	1 cut(s)	251
BseBI	CCWGG	1 cut(s)	319
BseCI	ATCGAT	1 cut(s)	398
BseDI	CCNNGG	2 cut(s)	350, 377
BseLI	CCNNNNNNNGG	1 cut(s)	253
BseMII	CTCAG	2 cut(s)	265, 273
BseRI	GAGGAG	1 cut(s)	57
BseSI	GKGCMC	1 cut(s)	259
BseXI	GCAGC	1 cut(s)	195
BseYI	CCCAGC	1 cut(s)	292
BshFI	GGCC	5 cut(s)	13, 40, 257, 382, 527
BshNI	GGYRCC	1 cut(s)	331
BshVI	ATCGAT	1 cut(s)	398
BsiHKAI	GWGCWC	1 cut(s)	432
BsiHKCI	CYCGRG	1 cut(s)	180
BslI	CCNNNNNNNGG	1 cut(s)	253
BsmAI	GTCTC	3 cut(s)	170, 278, 544
BsnI	GGCC	5 cut(s)	13, 40, 257, 382, 527
Bso31I	GGTCTC	1 cut(s)	170
BsoBI	CYCGRG	1 cut(s)	180
Bsp120I	GGGCCC	1 cut(s)	255
Bsp1286I	GDGCHC	2 cut(s)	259, 432
Bsp143I	GATC	4 cut(s)	236, 243, 343, 399
BspACI	CCGC	2 cut(s)	198, 528
BspANI	GGCC	5 cut(s)	13, 40, 257, 382, 527
BspCNI	CTCAG	2 cut(s)	264, 274
BspDI	ATCGAT	1 cut(s)	398
BspHI	TCATGA	1 cut(s)	369
BspLI	GGNNCC	3 cut(s)	257, 333, 356
BspPI	GGATC	4 cut(s)	231, 238, 338, 394
BspT107I	GGYRCC	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	350, 377
BssMI	GATC	4 cut(s)	236, 243, 343, 399
BssNI	GRCGYC	2 cut(s)	276, 315
BssT1I	CCWWGG	2 cut(s)	350, 377
Bst2UI	CCWGG	1 cut(s)	319
Bst4CI	ACNGT	1 cut(s)	418
BstACI	GRCGYC	2 cut(s)	276, 315
BstDEI	CTNAG	3 cut(s)	251, 282, 408
BstHHI	GCGC	1 cut(s)	213
BstKTI	GATC	4 cut(s)	239, 246, 346, 402
BstMAI	GTCTC	3 cut(s)	170, 278, 544
BstMBI	GATC	4 cut(s)	236, 243, 343, 399
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 287
BstNI	CCWGG	1 cut(s)	319
BstSCI	CCNGG	1 cut(s)	317
BstSLI	GKGCMC	1 cut(s)	259
BstV1I	GCAGC	1 cut(s)	195
BstX2I	RGATCY	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	343
Bsu15I	ATCGAT	1 cut(s)	398
Bsu36I	CCTNAGG	1 cut(s)	251
BsuRI	GGCC	5 cut(s)	13, 40, 257, 382, 527
BsuTUI	ATCGAT	1 cut(s)	398
BtsIMutI	CAGTG	1 cut(s)	316
CciI	TCATGA	1 cut(s)	369
CfoI	GCGC	1 cut(s)	213
Cfr13I	GGNCC	4 cut(s)	11, 255, 256, 354
ClaI	ATCGAT	1 cut(s)	398
CseI	GACGC	2 cut(s)	323, 429
CviAII	CATG	2 cut(s)	205, 370
CviJI	RGCY	9 cut(s)	13, 30, 40, 218, 257, 296, 382, 412, 527
CviKI_1	RGCY	9 cut(s)	13, 30, 40, 218, 257, 296, 382, 412, 527
DdeI	CTNAG	3 cut(s)	251, 282, 408
DpnI	GATC	4 cut(s)	238, 245, 345, 401
DpnII	GATC	4 cut(s)	236, 243, 343, 399
EciI	GGCGGA	1 cut(s)	187
Eco130I	CCWWGG	2 cut(s)	350, 377
Eco147I	AGGCCT	1 cut(s)	382
Eco24I	GRGCYC	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	170
Eco47I	GGWCC	1 cut(s)	354
Eco81I	CCTNAGG	1 cut(s)	251
Eco88I	CYCGRG	1 cut(s)	180
EcoO109I	RGGNCCY	2 cut(s)	255, 354
EcoRII	CCWGG	1 cut(s)	317
EcoT14I	CCWWGG	2 cut(s)	350, 377
EcoT38I	GRGCYC	1 cut(s)	259
ErhI	CCWWGG	2 cut(s)	350, 377
FaeI	CATG	2 cut(s)	208, 373
FaiI	YATR	6 cut(s)	26, 55, 206, 341, 371, 438
FatI	CATG	2 cut(s)	204, 369
Fnu4HI	GCNGC	2 cut(s)	209, 528
FriOI	GRGCYC	1 cut(s)	259
Fsp4HI	GCNGC	2 cut(s)	209, 528
FspBI	CTAG	2 cut(s)	378, 543
GlaI	GCGC	1 cut(s)	212
GluI	GCNGC	2 cut(s)	209, 528
GsaI	CCCAGC	1 cut(s)	296
HaeIII	GGCC	5 cut(s)	13, 40, 257, 382, 527
HgaI	GACGC	2 cut(s)	323, 429
HhaI	GCGC	1 cut(s)	213
Hin1I	GRCGYC	2 cut(s)	276, 315
Hin1II	CATG	2 cut(s)	208, 373
Hin6I	GCGC	1 cut(s)	211
HinP1I	GCGC	1 cut(s)	211
HinfI	GANTC	1 cut(s)	299
Hpy188I	TCNGA	4 cut(s)	106, 167, 445, 474
Hpy188III	TCNNGA	2 cut(s)	229, 370
Hpy99I	CGWCG	2 cut(s)	278, 281
HpyAV	CCTTC	3 cut(s)	200, 274, 376
HpyCH4III	ACNGT	1 cut(s)	418
HpyCH4IV	ACGT	1 cut(s)	276
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 287
HpyF3I	CTNAG	3 cut(s)	251, 282, 408
HpySE526I	ACGT	1 cut(s)	276
Hsp92I	GRCGYC	2 cut(s)	276, 315
Hsp92II	CATG	2 cut(s)	208, 373
HspAI	GCGC	1 cut(s)	211
Kzo9I	GATC	4 cut(s)	236, 243, 343, 399
LmnI	GCTCC	1 cut(s)	435
LpnPI	CCDG	8 cut(s)	184, 238, 304, 306, 331, 396, 483, 509
Lsp1109I	GCAGC	1 cut(s)	195
MaeI	CTAG	2 cut(s)	378, 543
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	2 cut(s)	311, 385
MalI	GATC	4 cut(s)	238, 245, 345, 401
MboI	GATC	4 cut(s)	236, 243, 343, 399
MboII	GAAGA	1 cut(s)	334
MflI	RGATCY	1 cut(s)	343
MhlI	GDGCHC	2 cut(s)	259, 432
MluCI	AATT	3 cut(s)	421, 511, 550
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	9 cut(s)	51, 75, 78, 133, 151, 236, 260, 345, 454
MseI	TTAA	1 cut(s)	6
MspR9I	CCNGG	1 cut(s)	319
MvaI	CCWGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	2 cut(s)	89, 287
NdeII	GATC	4 cut(s)	236, 243, 343, 399
NlaIII	CATG	2 cut(s)	208, 373
NlaIV	GGNNCC	3 cut(s)	257, 333, 356
NmeAIII	GCCGAG	1 cut(s)	239
NmuCI	GTSAC	1 cut(s)	311
PagI	TCATGA	1 cut(s)	369
PceI	AGGCCT	1 cut(s)	382
PcsI	WCGNNNNNNNCGW	1 cut(s)	95
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	2 cut(s)	210, 529
PpuMI	RGGWCCY	1 cut(s)	354
Psp5II	RGGWCCY	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	317
PspFI	CCCAGC	1 cut(s)	292
PspGI	CCWGG	1 cut(s)	317
PspN4I	GGNNCC	3 cut(s)	257, 333, 356
PspOMI	GGGCCC	1 cut(s)	255
PspPI	GGNCC	4 cut(s)	11, 255, 256, 354
PspPPI	RGGWCCY	1 cut(s)	354
PsuI	RGATCY	1 cut(s)	343
SaqAI	TTAA	1 cut(s)	6
SatI	GCNGC	2 cut(s)	209, 528
Sau3AI	GATC	4 cut(s)	236, 243, 343, 399
Sau96I	GGNCC	4 cut(s)	11, 255, 256, 354
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	259, 432
SetI	ASST	6 cut(s)	125, 279, 368, 379, 414, 465
SinI	GGWCC	1 cut(s)	354
Sse9I	AATT	3 cut(s)	421, 511, 550
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	2 cut(s)	198, 528
SspMI	CTAG	2 cut(s)	378, 543
StuI	AGGCCT	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	317
StyI	CCWWGG	2 cut(s)	350, 377
TaaI	ACNGT	1 cut(s)	418
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	3 cut(s)	130, 302, 398
TasI	AATT	3 cut(s)	421, 511, 550
TauI	GCSGC	1 cut(s)	530
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	1 cut(s)	6
Tru9I	TTAA	1 cut(s)	6
TscAI	CASTG	1 cut(s)	316
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	1 cut(s)	208
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	2 cut(s)	358, 386
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	354
XmaJI	CCTAGG	1 cut(s)	377
XspI	CTAG	2 cut(s)	378, 543
ZraI	GACGTC	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.