pycom07g07930

Protein PHLOEM PROTEIN 2-LIKE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
7268366 .. 7268742
377 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 336 bp
ATGAGAGTGAATCGGGGAAGGGGTTTGGAGAATTCGAGCTTTTCGAATAGGGTTTTCGAGAAGGTTTTCTCGACGGCTGTAATCGGGTTCGTTTCGGTTGTGGTTGGCAGCTTTGCTAAGAATTTGGTTATGGGATTTTACTCTGATGAACAATCGGGTGAGAATTTGAGTGTGGATCGGCGCCGACGAAAGGATGGAGAAGGGAGGGGGGTCGGGGGTTTAATTTTTAATATCCACGCGGGATCATTATTGACACGTGGTGCTTGTCATTGTGCATATAGGATATTTTATGTACTAAATGTTGAAAATCACGAAACTATAAGTACGACCGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005488 GO:0030246
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.22

Weight (kDa)

9.5

Isoelectric Point (pI)

39.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 180
AccII CGCG 1 cut(s) 239
AciI CCGC 1 cut(s) 239
AclWI GGATC 2 cut(s) 183, 250
AcsI RAATTY 3 cut(s) 31, 121, 163
AcvI CACGTG 1 cut(s) 257
AcyI GRCGYC 1 cut(s) 181
AdeI CACNNNGTG 1 cut(s) 260
AfaI GTAC 2 cut(s) 294, 325
AfiI CCNNNNNNNGG 1 cut(s) 190
AflIII ACRYGT 1 cut(s) 254
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 2 cut(s) 39, 111
AluI AGCT 2 cut(s) 39, 111
AlwI GGATC 2 cut(s) 183, 250
ApeKI GCWGC 1 cut(s) 108
ApoI RAATTY 3 cut(s) 31, 121, 163
Asp700I GAANNNNTTC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 170
AsuII TTCGAA 1 cut(s) 44
BanI GGYRCC 1 cut(s) 180
BbrPI CACGTG 1 cut(s) 257
BbvI GCAGC 1 cut(s) 120
BccI CCATC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 90
BfaI CTAG 1 cut(s) 334
BfoI RGCGCY 1 cut(s) 184
BisI GCNGC 1 cut(s) 109
BlsI GCNGC 1 cut(s) 110
BmiI GGNNCC 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 44
BsaAI YACGTR 1 cut(s) 257
BsaHI GRCGYC 1 cut(s) 181
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse118I RCCGGY 1 cut(s) 329
BseGI GGATG 1 cut(s) 199
BseLI CCNNNNNNNGG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 120
Bsh1236I CGCG 1 cut(s) 239
Bsh1285I CGRYCG 1 cut(s) 330
BshNI GGYRCC 1 cut(s) 180
BsiEI CGRYCG 1 cut(s) 330
BsiSI CCGG 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 190
Bsp119I TTCGAA 1 cut(s) 44
Bsp143I GATC 2 cut(s) 175, 242
BspACI CCGC 1 cut(s) 239
BspFNI CGCG 1 cut(s) 239
BspLI GGNNCC 1 cut(s) 182
BspPI GGATC 2 cut(s) 183, 250
BspT104I TTCGAA 1 cut(s) 44
BspT107I GGYRCC 1 cut(s) 180
BsrFI RCCGGY 1 cut(s) 329
BssAI RCCGGY 1 cut(s) 329
BssMI GATC 2 cut(s) 175, 242
BssNI GRCGYC 1 cut(s) 181
BstACI GRCGYC 1 cut(s) 181
BstBAI YACGTR 1 cut(s) 257
BstBI TTCGAA 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 117
BstF5I GGATG 1 cut(s) 199
BstFNI CGCG 1 cut(s) 239
BstH2I RGCGCY 1 cut(s) 184
BstHHI GCGC 1 cut(s) 183
BstKTI GATC 2 cut(s) 178, 245
BstMBI GATC 2 cut(s) 175, 242
BstMCI CGRYCG 1 cut(s) 330
BstUI CGCG 1 cut(s) 239
BstV1I GCAGC 1 cut(s) 120
BtsCI GGATG 1 cut(s) 199
CfoI GCGC 1 cut(s) 183
Cfr10I RCCGGY 1 cut(s) 329
Csp6I GTAC 2 cut(s) 293, 324
CviJI RGCY 4 cut(s) 39, 77, 111, 333
CviKI_1 RGCY 4 cut(s) 39, 77, 111, 333
CviQI GTAC 2 cut(s) 293, 324
DdeI CTNAG 1 cut(s) 117
DinI GGCGCC 1 cut(s) 182
DpnI GATC 2 cut(s) 177, 244
DpnII GATC 2 cut(s) 175, 242
DraIII CACNNNGTG 1 cut(s) 260
Eco72I CACGTG 1 cut(s) 257
EcoRI GAATTC 1 cut(s) 31
EgeI GGCGCC 1 cut(s) 182
EheI GGCGCC 1 cut(s) 182
FaiI YATR 5 cut(s) 131, 277, 279, 291, 320
FauI CCCGC 1 cut(s) 232
Fnu4HI GCNGC 1 cut(s) 109
FokI GGATG 1 cut(s) 206
Fsp4HI GCNGC 1 cut(s) 109
FspBI CTAG 1 cut(s) 334
GlaI GCGC 1 cut(s) 182
GluI GCNGC 1 cut(s) 109
HaeII RGCGCY 1 cut(s) 184
HapII CCGG 1 cut(s) 330
HhaI GCGC 1 cut(s) 183
Hin1I GRCGYC 1 cut(s) 181
Hin6I GCGC 1 cut(s) 181
HinP1I GCGC 1 cut(s) 181
HinfI GANTC 1 cut(s) 10
HpaII CCGG 1 cut(s) 330
HphI GGTGA 1 cut(s) 170
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 3 cut(s) 58, 70, 311
Hpy99I CGWCG 2 cut(s) 76, 189
HpyAV CCTTC 3 cut(s) 12, 55, 194
HpyCH4IV ACGT 1 cut(s) 256
HpyCH4V TGCA 1 cut(s) 275
HpyF3I CTNAG 1 cut(s) 117
HpySE526I ACGT 1 cut(s) 256
Hsp92I GRCGYC 1 cut(s) 181
HspAI GCGC 1 cut(s) 181
KasI GGCGCC 1 cut(s) 180
Kzo9I GATC 2 cut(s) 175, 242
Lsp1109I GCAGC 1 cut(s) 120
MaeI CTAG 1 cut(s) 334
MaeII ACGT 1 cut(s) 256
MalI GATC 2 cut(s) 177, 244
MboI GATC 2 cut(s) 175, 242
MluCI AATT 4 cut(s) 31, 121, 163, 222
Mly113I GGCGCC 1 cut(s) 181
MnlI CCTC 1 cut(s) 198
MroXI GAANNNNTTC 1 cut(s) 65
MseI TTAA 2 cut(s) 221, 228
MspI CCGG 1 cut(s) 330
MvnI CGCG 1 cut(s) 239
NarI GGCGCC 1 cut(s) 181
NdeII GATC 2 cut(s) 175, 242
NlaIV GGNNCC 1 cut(s) 182
NspV TTCGAA 1 cut(s) 44
PcsI WCGNNNNNNNCGW 2 cut(s) 41, 184
PdmI GAANNNNTTC 1 cut(s) 65
PfeI GAWTC 1 cut(s) 10
PkrI GCNGC 1 cut(s) 110
PluTI GGCGCC 1 cut(s) 184
PmaCI CACGTG 1 cut(s) 257
PmlI CACGTG 1 cut(s) 257
Ppu21I YACGTR 1 cut(s) 257
PspCI CACGTG 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 182
RsaI GTAC 2 cut(s) 294, 325
RsaNI GTAC 2 cut(s) 293, 324
SaqAI TTAA 2 cut(s) 221, 228
SatI GCNGC 1 cut(s) 109
Sau3AI GATC 2 cut(s) 175, 242
SetI ASST 4 cut(s) 41, 66, 113, 259
SfoI GGCGCC 1 cut(s) 182
SfuI TTCGAA 1 cut(s) 44
Sse9I AATT 4 cut(s) 31, 121, 163, 222
SsiI CCGC 1 cut(s) 239
SspDI GGCGCC 1 cut(s) 180
SspMI CTAG 1 cut(s) 334
TaiI ACGT 1 cut(s) 259
TaqI TCGA 4 cut(s) 35, 44, 57, 71
TasI AATT 4 cut(s) 31, 121, 163, 222
TatI WGTACW 1 cut(s) 292
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 2 cut(s) 221, 228
Tru9I TTAA 2 cut(s) 221, 228
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 162
XapI RAATTY 3 cut(s) 31, 121, 163
XmnI GAANNNNTTC 1 cut(s) 65
XspI CTAG 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.