Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7472524 .. 7474164

Gene Structure 1641 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 519 bp

ATGTCTTTCGCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACTGAGTTTGAGAAGGACGATGAATTACGAGCAGAGGCTCAAAGCCGCGGCGAAGATCATACTCACTGATGACGCACGCGCCGGAGACGCGCGTGTCGACTCTGAAGAGCTCGGCGTCAAGGCTAAACTGAAGCCTCACCAGGTCGAAGGCGTGTCGTGGCTCATACGCCGATACAATCTCGGCGTCAACGTCATTCTCGGAGACGAGATGGGACTGGGAAAGACGTTACAAGCTGTTTCATTACTGAGCTATTTGAAGGTTCAGAAGATGTCATCTGGACCATTTTTGGTATTGTGTCCTTTGAGTGTGACGGATGGTTGGATCACAGAGATGGACACATTTGCTCCAAAACTAAAGGCTCTTCGGTATATTGGTGATAAAGAAAATCGGCGCATTCTACGCAGGACAATCTACAAGCACATAAACGAACAGACCTCATCTGATGTAAGTATTGTCGTTGCCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

173

Amino Acids

19.18

Weight (kDa)

9.64

Isoelectric Point (pI)

46.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	63 - 153	2.6e-24	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	143
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	5 cut(s)	11, 98, 129, 140, 142
AciI	CCGC	2 cut(s)	96, 98
AclWI	GGATC	1 cut(s)	380
AcuI	CTGAAG	2 cut(s)	174, 200
AcyI	GRCGYC	2 cut(s)	165, 234
AgsI	TTSAA	1 cut(s)	307
AjnI	CCWGG	1 cut(s)	189
AluBI	AGCT	3 cut(s)	160, 284, 300
AluI	AGCT	3 cut(s)	160, 284, 300
Alw21I	GWGCWC	1 cut(s)	162
Alw26I	GTCTC	2 cut(s)	129, 246
AlwI	GGATC	1 cut(s)	380
AspLEI	GCGC	4 cut(s)	13, 131, 142, 444
AspS9I	GGNCC	1 cut(s)	329
AsuHPI	GGTGA	2 cut(s)	179, 437
AvaII	GGWCC	1 cut(s)	329
BanII	GRGCYC	1 cut(s)	162
Bbv12I	GWGCWC	1 cut(s)	162
BccI	CCATC	3 cut(s)	253, 359, 376
BciT130I	CCWGG	1 cut(s)	191
BcoDI	GTCTC	2 cut(s)	129, 246
BisI	GCNGC	2 cut(s)	96, 99
BlsI	GCNGC	2 cut(s)	97, 100
Bme1390I	CCNGG	1 cut(s)	191
Bme18I	GGWCC	1 cut(s)	329
BmgT120I	GGNCC	1 cut(s)	329
BmrFI	CCNGG	1 cut(s)	191
BmrI	ACTGGG	1 cut(s)	275
BmuI	ACTGGG	1 cut(s)	275
BsaHI	GRCGYC	2 cut(s)	165, 234
BsaJI	CCNNGG	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	379, 409
Bse1I	ACTGG	1 cut(s)	270
BseBI	CCWGG	1 cut(s)	191
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	1 cut(s)	370
BseMII	CTCAG	2 cut(s)	44, 287
BseNI	ACTGG	1 cut(s)	270
Bsh1236I	CGCG	5 cut(s)	11, 98, 129, 140, 142
BsiHKAI	GWGCWC	1 cut(s)	162
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	1 cut(s)	276
BsmAI	GTCTC	2 cut(s)	129, 246
BsmBI	CGTCTC	2 cut(s)	129, 246
BsmFI	GGGAC	1 cut(s)	276
BsmI	GAATGC	1 cut(s)	444
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	105, 372
BspACI	CCGC	2 cut(s)	96, 98
BspCNI	CTCAG	2 cut(s)	45, 288
BspFNI	CGCG	5 cut(s)	11, 98, 129, 140, 142
BspPI	GGATC	1 cut(s)	380
BspQI	GCTCTTC	2 cut(s)	150, 417
BsrI	ACTGG	1 cut(s)	270
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	105, 372
BssNI	GRCGYC	2 cut(s)	165, 234
Bst2UI	CCWGG	1 cut(s)	191
Bst6I	CTCTTC	2 cut(s)	150, 417
BstACI	GRCGYC	2 cut(s)	165, 234
BstC8I	GCNNGC	1 cut(s)	127
BstDEI	CTNAG	2 cut(s)	53, 296
BstDSI	CCRYGG	1 cut(s)	96
BstF5I	GGATG	1 cut(s)	370
BstFNI	CGCG	5 cut(s)	11, 98, 129, 140, 142
BstHHI	GCGC	4 cut(s)	13, 131, 142, 444
BstKTI	GATC	2 cut(s)	108, 375
BstMAI	GTCTC	2 cut(s)	129, 246
BstMBI	GATC	2 cut(s)	105, 372
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 450
BstNI	CCWGG	1 cut(s)	191
BstSCI	CCNGG	1 cut(s)	189
BstUI	CGCG	5 cut(s)	11, 98, 129, 140, 142
BtgI	CCRYGG	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	127
CfoI	GCGC	4 cut(s)	13, 131, 142, 444
Cfr13I	GGNCC	1 cut(s)	329
Cfr42I	CCGCGG	1 cut(s)	99
CseI	GACGC	4 cut(s)	131, 146, 154, 223
CsiI	ACCWGGT	1 cut(s)	189
CviJI	RGCY	9 cut(s)	88, 95, 160, 173, 184, 211, 284, 300, 410
CviKI_1	RGCY	9 cut(s)	88, 95, 160, 173, 184, 211, 284, 300, 410
DdeI	CTNAG	2 cut(s)	53, 296
DpnI	GATC	2 cut(s)	107, 374
DpnII	GATC	2 cut(s)	105, 372
DrdI	GACNNNNNNGTC	1 cut(s)	143
DseDI	GACNNNNNNGTC	1 cut(s)	143
Eam1104I	CTCTTC	2 cut(s)	150, 417
EarI	CTCTTC	2 cut(s)	150, 417
Ecl136II	GAGCTC	1 cut(s)	160
Eco24I	GRGCYC	1 cut(s)	162
Eco47I	GGWCC	1 cut(s)	329
Eco53kI	GAGCTC	1 cut(s)	160
Eco57I	CTGAAG	2 cut(s)	174, 200
EcoICRI	GAGCTC	1 cut(s)	160
EcoRII	CCWGG	1 cut(s)	189
EcoT38I	GRGCYC	1 cut(s)	162
Esp3I	CGTCTC	2 cut(s)	129, 246
FaiI	YATR	4 cut(s)	110, 215, 420, 473
FaqI	GGGAC	1 cut(s)	276
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	96, 99
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	2 cut(s)	96, 99
GlaI	GCGC	4 cut(s)	12, 130, 141, 443
GluI	GCNGC	2 cut(s)	96, 99
HapII	CCGG	1 cut(s)	132
HgaI	GACGC	4 cut(s)	131, 146, 154, 223
HhaI	GCGC	4 cut(s)	13, 131, 142, 444
Hin1I	GRCGYC	2 cut(s)	165, 234
Hin6I	GCGC	4 cut(s)	11, 129, 140, 442
HinP1I	GCGC	4 cut(s)	11, 129, 140, 442
HincII	GTYRAC	2 cut(s)	148, 238
HindII	GTYRAC	2 cut(s)	148, 238
HinfI	GANTC	1 cut(s)	149
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	179, 437
Hpy166II	GTNNAC	2 cut(s)	148, 238
Hpy188I	TCNGA	4 cut(s)	154, 251, 315, 493
Hpy188III	TCNNGA	1 cut(s)	327
Hpy8I	GTNNAC	2 cut(s)	148, 238
HpyAV	CCTTC	3 cut(s)	57, 191, 301
HpyCH4IV	ACGT	2 cut(s)	240, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 450
HpyF3I	CTNAG	2 cut(s)	53, 296
HpySE526I	ACGT	2 cut(s)	240, 275
Hsp92I	GRCGYC	2 cut(s)	165, 234
HspAI	GCGC	4 cut(s)	11, 129, 140, 442
KspI	CCGCGG	1 cut(s)	99
Kzo9I	GATC	2 cut(s)	105, 372
LguI	GCTCTTC	2 cut(s)	150, 417
LmnI	GCTCC	1 cut(s)	400
LpnPI	CCDG	6 cut(s)	145, 176, 203, 251, 312, 439
MabI	ACCWGGT	1 cut(s)	189
MaeII	ACGT	2 cut(s)	240, 275
MaeIII	GTNAC	2 cut(s)	276, 358
MalI	GATC	2 cut(s)	107, 374
MboI	GATC	2 cut(s)	105, 372
MboII	GAAGA	4 cut(s)	115, 167, 328, 404
MhlI	GDGCHC	1 cut(s)	162
MluCI	AATT	1 cut(s)	73
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	1 cut(s)	350
MnlI	CCTC	3 cut(s)	78, 195, 496
MslI	CAYNNNNRTG	1 cut(s)	380
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	191
Mva1269I	GAATGC	1 cut(s)	444
MvaI	CCWGG	1 cut(s)	191
MvnI	CGCG	5 cut(s)	11, 98, 129, 140, 142
MwoI	GCNNNNNNNGC	2 cut(s)	137, 450
NdeII	GATC	2 cut(s)	105, 372
NmeAIII	GCCGAG	2 cut(s)	141, 210
NmuCI	GTSAC	1 cut(s)	358
PciSI	GCTCTTC	2 cut(s)	150, 417
PcsI	WCGNNNNNNNCGW	2 cut(s)	144, 237
PctI	GAATGC	1 cut(s)	444
PkrI	GCNGC	2 cut(s)	97, 100
PleI	GAGTC	1 cut(s)	143
PpsI	GAGTC	1 cut(s)	143
Psp124BI	GAGCTC	1 cut(s)	162
Psp6I	CCWGG	1 cut(s)	189
PspGI	CCWGG	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	329
RseI	CAYNNNNRTG	1 cut(s)	380
SacI	GAGCTC	1 cut(s)	162
SacII	CCGCGG	1 cut(s)	99
SalI	GTCGAC	1 cut(s)	146
SapI	GCTCTTC	2 cut(s)	150, 417
SatI	GCNGC	2 cut(s)	96, 99
Sau3AI	GATC	2 cut(s)	105, 372
Sau96I	GGNCC	1 cut(s)	329
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	191
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	8 cut(s)	162, 195, 243, 278, 286, 302, 312, 488
SexAI	ACCWGGT	1 cut(s)	189
Sfr303I	CCGCGG	1 cut(s)	99
SgrBI	CCGCGG	1 cut(s)	99
SinI	GGWCC	1 cut(s)	329
SmiMI	CAYNNNNRTG	1 cut(s)	380
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	2 cut(s)	96, 98
SstI	GAGCTC	1 cut(s)	162
StyD4I	CCNGG	1 cut(s)	189
TaiI	ACGT	2 cut(s)	243, 278
TaqI	TCGA	2 cut(s)	147, 195
TasI	AATT	1 cut(s)	73
TauI	GCSGC	2 cut(s)	98, 101
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	358
Tsp45I	GTSAC	1 cut(s)	358
TspDTI	ATGAA	2 cut(s)	86, 279
TspGWI	ACGGA	1 cut(s)	377
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	329
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.