Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

7474220 .. 7476752

Gene Structure 2533 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGCCCTGGAGCTATGCCGTAATAGATGAAGCGCAAAGGCTCAAAAACCCTTCCAGTGTTTTGCACAATGTCCTAAGAGAGCGCTATCTCATACCAAGACGGTTACTGATGACTGGCACACCTATCCAAAACAATCTCACTGAACTTTGGGCTTTGATGCATTTTTGTATGCCTTCAGTCTTTGGGAAGCTAGACAAGTTCCTTGCAACATTCAAGGAAGCTGGAGATCCCTCATCAGCTGCAGGCCATGATACAACCAAAGTCAAGGAACAACTCAAAACCTTAAGAAGTATCTTGGGAGCTTTCATGCTCCGCCGTACAAAATCTAAACTTATTGAGTCTGGAGATTTATCCCTGCCACCGCTTACTGAGATAACAGTGCTGGCACCATTGGTCAGCTTGCAAAAGAAGGTGTATATGTCAATATTGAGAAAGGAGCTTCCTAAGCTACTTGCACTCTCTTCCGGAGGTTCAAATCATCAGTCCTTACAGAATATTGTAATACAGCTGCGAAAAGCATGTAGCCATCCATATCTCTTCCCTGGTATTGAGCCTGAACCATATGAAGAGGGCGAACACCTGGTTCAGGCTAGTGGTAAGCTTATAATCTTGGATCGACTACTTCAAAAGCTACATGAGTATGGACACCGTGTGCTTCTCTTTGCACAGATGACGCATACCCTTGATATTCTGATTTTCTGGAGTTACGAAAGTATTCCTACGAGCGGCTTGATGGATCAATTCGCGCTGAGGAGCGCTTTGCTGCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003678 GO:0003824 GO:0004003 GO:0004386 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006259 GO:0006281 GO:0006289 GO:0006293 GO:0006294 GO:0006296 GO:0006325 GO:0006338 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022607 GO:0031334 GO:0031974 GO:0031981 GO:0032392 GO:0032508 GO:0033554 GO:0033683 GO:0034622 GO:0034641 GO:0036094 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044089 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051130 GO:0051276 GO:0051716 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070035 GO:0070911 GO:0071103 GO:0071704 GO:0071824 GO:0071840 GO:0071944 GO:0090304 GO:0090305 GO:0097159 GO:0140097 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Helicase_C SNF2_N

Protein Analysis

257

Amino Acids

28.92

Weight (kDa)

9.28

Isoelectric Point (pI)

56.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNF2-rel_dom	PF00176	3 - 179	9.5e-36	SNF2-related domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	605
AccB1I	GGYRCC	1 cut(s)	385
AccBSI	CCGCTC	1 cut(s)	726
AccII	CGCG	1 cut(s)	746
AccIII	TCCGGA	1 cut(s)	464
AciI	CCGC	3 cut(s)	313, 362, 726
AclWI	GGATC	3 cut(s)	221, 621, 744
AcuI	CTGAAG	1 cut(s)	159
AdeI	CACNNNGTG	1 cut(s)	652
AfaI	GTAC	1 cut(s)	319
AfeI	AGCGCT	2 cut(s)	83, 757
AfiI	CCNNNNNNNGG	2 cut(s)	586, 725
AflII	CTTAAG	1 cut(s)	283
AgsI	TTSAA	3 cut(s)	214, 474, 626
AjnI	CCWGG	3 cut(s)	5, 541, 579
AlwI	GGATC	3 cut(s)	221, 621, 744
Aor13HI	TCCGGA	1 cut(s)	464
Aor51HI	AGCGCT	2 cut(s)	83, 757
AoxI	GGCC	1 cut(s)	244
ApeKI	GCWGC	3 cut(s)	239, 508, 763
ArsI	GACNNNNNNTTYG	2 cut(s)	467, 499
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	4 cut(s)	34, 84, 748, 758
BanI	GGYRCC	1 cut(s)	385
BbvCI	CCTCAGC	1 cut(s)	749
BbvI	GCAGC	3 cut(s)	226, 495, 750
BccI	CCATC	2 cut(s)	534, 727
BceAI	ACGGC	2 cut(s)	2, 300
BciT130I	CCWGG	3 cut(s)	7, 543, 581
BfaI	CTAG	2 cut(s)	191, 591
BfmI	CTRYAG	1 cut(s)	240
BfoI	RGCGCY	2 cut(s)	85, 759
BfrI	CTTAAG	1 cut(s)	283
BisI	GCNGC	4 cut(s)	240, 509, 727, 764
BlsI	GCNGC	4 cut(s)	241, 510, 728, 765
Bme1390I	CCNGG	3 cut(s)	7, 543, 581
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	3 cut(s)	7, 543, 581
BmsI	GCATC	1 cut(s)	147
BpmI	CTGGAG	4 cut(s)	28, 243, 363, 721
Bpu10I	CCTNAGC	2 cut(s)	444, 749
BsaJI	CCNNGG	2 cut(s)	5, 541
BsaWI	WCCGGW	1 cut(s)	464
Bsc4I	CCNNNNNNNGG	2 cut(s)	586, 725
Bse1I	ACTGG	2 cut(s)	54, 118
BseAI	TCCGGA	1 cut(s)	464
BseBI	CCWGG	3 cut(s)	7, 543, 581
BseDI	CCNNGG	2 cut(s)	5, 541
BseGI	GGATG	1 cut(s)	526
BseLI	CCNNNNNNNGG	2 cut(s)	586, 725
BseMII	CTCAG	2 cut(s)	360, 740
BseNI	ACTGG	2 cut(s)	54, 118
BseRI	GAGGAG	1 cut(s)	766
BseXI	GCAGC	3 cut(s)	226, 495, 750
Bsh1236I	CGCG	1 cut(s)	746
BshFI	GGCC	1 cut(s)	246
BshNI	GGYRCC	1 cut(s)	385
BsiSI	CCGG	1 cut(s)	465
BslI	CCNNNNNNNGG	2 cut(s)	586, 725
BsnI	GGCC	1 cut(s)	246
Bsp13I	TCCGGA	1 cut(s)	464
Bsp143I	GATC	3 cut(s)	226, 613, 736
BspACI	CCGC	3 cut(s)	313, 362, 726
BspANI	GGCC	1 cut(s)	246
BspCNI	CTCAG	2 cut(s)	361, 741
BspEI	TCCGGA	1 cut(s)	464
BspFNI	CGCG	1 cut(s)	746
BspLI	GGNNCC	1 cut(s)	387
BspMAI	CTGCAG	1 cut(s)	244
BspPI	GGATC	3 cut(s)	221, 621, 744
BspT107I	GGYRCC	1 cut(s)	385
BspTI	CTTAAG	1 cut(s)	283
BsrBI	CCGCTC	1 cut(s)	726
BsrI	ACTGG	2 cut(s)	54, 118
BssECI	CCNNGG	2 cut(s)	5, 541
BssMI	GATC	3 cut(s)	226, 613, 736
Bst2UI	CCWGG	3 cut(s)	7, 543, 581
Bst4CI	ACNGT	3 cut(s)	102, 379, 650
Bst6I	CTCTTC	3 cut(s)	466, 542, 561
BstAFI	CTTAAG	1 cut(s)	283
BstC8I	GCNNGC	3 cut(s)	244, 384, 401
BstDEI	CTNAG	4 cut(s)	74, 369, 444, 749
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	1 cut(s)	526
BstFNI	CGCG	1 cut(s)	746
BstH2I	RGCGCY	2 cut(s)	85, 759
BstHHI	GCGC	4 cut(s)	34, 84, 748, 758
BstKTI	GATC	3 cut(s)	229, 616, 739
BstMBI	GATC	3 cut(s)	226, 613, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	445
BstNI	CCWGG	3 cut(s)	7, 543, 581
BstNSI	RCATGY	1 cut(s)	522
BstSCI	CCNGG	3 cut(s)	5, 541, 579
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	746
BstV1I	GCAGC	3 cut(s)	226, 495, 750
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	526
BtsIMutI	CAGTG	3 cut(s)	61, 138, 384
Cac8I	GCNNGC	3 cut(s)	244, 384, 401
CfoI	GCGC	4 cut(s)	34, 84, 748, 758
CseI	GACGC	1 cut(s)	682
CsiI	ACCWGGT	1 cut(s)	579
Csp6I	GTAC	1 cut(s)	318
CviAII	CATG	4 cut(s)	248, 307, 519, 635
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	4 cut(s)	74, 369, 444, 749
DpnI	GATC	3 cut(s)	228, 615, 738
DpnII	GATC	3 cut(s)	226, 613, 736
DraIII	CACNNNGTG	1 cut(s)	652
Eam1104I	CTCTTC	3 cut(s)	466, 542, 561
EarI	CTCTTC	3 cut(s)	466, 542, 561
EciI	GGCGGA	1 cut(s)	302
Eco47III	AGCGCT	2 cut(s)	83, 757
Eco57I	CTGAAG	1 cut(s)	159
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoRII	CCWGG	3 cut(s)	5, 541, 579
EcoT22I	ATGCAT	1 cut(s)	162
FaeI	CATG	4 cut(s)	251, 310, 522, 638
FatI	CATG	4 cut(s)	247, 306, 518, 634
FauNDI	CATATG	1 cut(s)	562
Fnu4HI	GCNGC	4 cut(s)	240, 509, 727, 764
FokI	GGATG	1 cut(s)	513
Fsp4HI	GCNGC	4 cut(s)	240, 509, 727, 764
FspBI	CTAG	2 cut(s)	191, 591
GlaI	GCGC	4 cut(s)	33, 83, 747, 757
GluI	GCNGC	4 cut(s)	240, 509, 727, 764
GsuI	CTGGAG	4 cut(s)	28, 243, 363, 721
HaeII	RGCGCY	2 cut(s)	85, 759
HaeIII	GGCC	1 cut(s)	246
HapII	CCGG	1 cut(s)	465
HgaI	GACGC	1 cut(s)	682
HhaI	GCGC	4 cut(s)	34, 84, 748, 758
Hin1II	CATG	4 cut(s)	251, 310, 522, 638
Hin6I	GCGC	4 cut(s)	32, 82, 746, 756
HinP1I	GCGC	4 cut(s)	32, 82, 746, 756
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	1 cut(s)	465
Hpy188I	TCNGA	1 cut(s)	693
Hpy188III	TCNNGA	3 cut(s)	342, 465, 700
HpyAV	CCTTC	3 cut(s)	60, 183, 403
HpyCH4III	ACNGT	3 cut(s)	102, 379, 650
HpyCH4V	TGCA	7 cut(s)	64, 160, 206, 242, 403, 455, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	445
HpyF3I	CTNAG	4 cut(s)	74, 369, 444, 749
Hsp92II	CATG	4 cut(s)	251, 310, 522, 638
HspAI	GCGC	4 cut(s)	32, 82, 746, 756
Kpn2I	TCCGGA	1 cut(s)	464
Kzo9I	GATC	3 cut(s)	226, 613, 736
LmnI	GCTCC	5 cut(s)	9, 299, 315, 436, 753
Lsp1109I	GCAGC	3 cut(s)	226, 495, 750
LweI	GCATC	1 cut(s)	147
MabI	ACCWGGT	1 cut(s)	579
MaeI	CTAG	2 cut(s)	191, 591
MaeIII	GTNAC	2 cut(s)	102, 704
MalI	GATC	3 cut(s)	228, 615, 738
MbiI	CCGCTC	1 cut(s)	726
MboI	GATC	3 cut(s)	226, 613, 736
MboII	GAAGA	3 cut(s)	453, 529, 578
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	1 cut(s)	740
MlyI	GAGTC	1 cut(s)	347
MnlI	CCTC	4 cut(s)	241, 461, 562, 744
Mph1103I	ATGCAT	1 cut(s)	162
MroI	TCCGGA	1 cut(s)	464
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	639
MspA1I	CMGCKG	2 cut(s)	239, 508
MspCI	CTTAAG	1 cut(s)	283
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	3 cut(s)	7, 543, 581
MvaI	CCWGG	3 cut(s)	7, 543, 581
MvnI	CGCG	1 cut(s)	746
MwoI	GCNNNNNNNGC	1 cut(s)	445
NdeI	CATATG	1 cut(s)	562
NdeII	GATC	3 cut(s)	226, 613, 736
NlaIII	CATG	4 cut(s)	251, 310, 522, 638
NlaIV	GGNNCC	1 cut(s)	387
NsiI	ATGCAT	1 cut(s)	162
NspI	RCATGY	1 cut(s)	522
PdmI	GAANNNNTTC	1 cut(s)	714
PkrI	GCNGC	4 cut(s)	241, 510, 728, 765
PleI	GAGTC	1 cut(s)	346
PpsI	GAGTC	1 cut(s)	346
PsiI	TTATAA	1 cut(s)	605
Psp6I	CCWGG	3 cut(s)	5, 541, 579
PspGI	CCWGG	3 cut(s)	5, 541, 579
PspN4I	GGNNCC	1 cut(s)	387
PstI	CTGCAG	1 cut(s)	244
PsuI	RGATCY	1 cut(s)	226
PvuII	CAGCTG	2 cut(s)	239, 508
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	1 cut(s)	639
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	4 cut(s)	240, 509, 727, 764
Sau3AI	GATC	3 cut(s)	226, 613, 736
SchI	GAGTC	1 cut(s)	347
ScrFI	CCNGG	3 cut(s)	7, 543, 581
SexAI	ACCWGGT	1 cut(s)	579
SfaNI	GCATC	1 cut(s)	147
SfcI	CTRYAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	639
SmlI	CTYRAG	1 cut(s)	283
SmoI	CTYRAG	1 cut(s)	283
Sse9I	AATT	1 cut(s)	740
SsiI	CCGC	3 cut(s)	313, 362, 726
SspI	AATATT	2 cut(s)	426, 496
SspMI	CTAG	2 cut(s)	191, 591
StyD4I	CCNGG	3 cut(s)	5, 541, 579
TaaI	ACNGT	3 cut(s)	102, 379, 650
TaqI	TCGA	1 cut(s)	616
TasI	AATT	1 cut(s)	740
TauI	GCSGC	1 cut(s)	729
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	3 cut(s)	61, 145, 384
TseI	GCWGC	3 cut(s)	239, 508, 763
TspDTI	ATGAA	3 cut(s)	42, 295, 579
TspRI	CASTG	3 cut(s)	61, 145, 384
Vha464I	CTTAAG	1 cut(s)	283
XagI	CCTNNNNNAGG	1 cut(s)	584
XceI	RCATGY	1 cut(s)	522
XmnI	GAANNNNTTC	1 cut(s)	714
XspI	CTAG	2 cut(s)	191, 591
Zsp2I	ATGCAT	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.