pycom07g08610

K homology RNA-binding domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
7889999 .. 7890927
929 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 702 bp
ATGGTGGTATTGGAAGCACTAGTTGGTGGGTTGATTGGGAGCAACGATCAAAGTGTGTTGTATTTTATTACAAAAGATCTTTGTGCAATTTTCTCACTTTATATATTTTGTATATATGTGCAAAATATGTTCCAACAAGATCTTCAACATGTAGCTCAAATATTAACAAAAGAAAATTGTATAAAAACTCTACCTTGTGCGCAATATGGTTTGGCTGACGAAAACAAGCCTACCAAGTATTCGACGAAATGCCTCAGTAAACAAACTGAATTTTTTTTTTTTTTTTTTTTTTTTTTGCGCGCTTCCAATCCCCAAAATTCAAATACTGGATCTACCACTATCAGCAAGCGATTTCTTTTGGTCCAGTCTATAACTGCACAACACTTTGATCAACCACCTCAAATTCAACCATACATGTACTCAGATTCAGGTTCTTACAAACTCTCCCTAAAAGTGCCACAATATTATGCGGCTCTATCAATAAACCTTCGAGTTGGTGGGTTGTTTGGTAGAAATGGCTCCAACATTTCAAGGATCGGAAATGAGTATGGTGCAATGTGCTGCATTTTATCACAAAAAAAATTTGGTGCAATCAAGTGCTTTTTATCACAAAGGGTGAGCAACGATAAATATAAATTTTCCTGGAAGTATATAGGAATGACCCTATTAAATATTTCATCGGCACAGAGACGTTTGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1

Protein Analysis

234

Amino Acids

26.49

Weight (kDa)

9.36

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 201
AccII CGCG 1 cut(s) 300
AciI CCGC 1 cut(s) 470
AclWI GGATC 2 cut(s) 337, 542
AcsI RAATTY 5 cut(s) 269, 316, 402, 581, 635
AfaI GTAC 1 cut(s) 419
AflIII ACRYGT 2 cut(s) 148, 414
AgsI TTSAA 4 cut(s) 146, 321, 407, 531
AhlI ACTAGT 1 cut(s) 19
AjnI CCWGG 1 cut(s) 641
AjuI GAANNNNNNNTTGG 3 cut(s) 38, 126, 158
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
Alw26I GTCTC 1 cut(s) 682
AlwI GGATC 2 cut(s) 337, 542
ApeKI GCWGC 1 cut(s) 561
ApoI RAATTY 5 cut(s) 269, 316, 402, 581, 635
AspLEI GCGC 3 cut(s) 202, 300, 302
AspS9I GGNCC 1 cut(s) 361
AsuHPI GGTGA 1 cut(s) 628
AvaII GGWCC 1 cut(s) 361
BbvI GCAGC 1 cut(s) 548
BciT130I CCWGG 1 cut(s) 643
BclI TGATCA 1 cut(s) 388
BcoDI GTCTC 1 cut(s) 682
BcuI ACTAGT 1 cut(s) 19
BfaI CTAG 1 cut(s) 20
BglII AGATCT 2 cut(s) 76, 139
BisI GCNGC 2 cut(s) 471, 562
BlsI GCNGC 2 cut(s) 472, 563
Bme1390I CCNGG 1 cut(s) 643
Bme18I GGWCC 1 cut(s) 361
BmgT120I GGNCC 1 cut(s) 361
BmiI GGNNCC 1 cut(s) 520
BmrFI CCNGG 1 cut(s) 643
BsaXI ACNNNNNCTCC 2 cut(s) 428, 458
Bse1I ACTGG 2 cut(s) 331, 364
Bse3DI GCAATG 1 cut(s) 561
BseBI CCWGG 1 cut(s) 643
BseMI GCAATG 1 cut(s) 561
BseMII CTCAG 2 cut(s) 268, 435
BseNI ACTGG 2 cut(s) 331, 364
BsePI GCGCGC 1 cut(s) 298
BseXI GCAGC 1 cut(s) 548
BsgI GTGCAG 1 cut(s) 360
Bsh1236I CGCG 1 cut(s) 300
BsmAI GTCTC 1 cut(s) 682
BsmBI CGTCTC 1 cut(s) 682
Bsp143I GATC 6 cut(s) 46, 76, 139, 329, 388, 534
BspACI CCGC 1 cut(s) 470
BspCNI CTCAG 2 cut(s) 267, 434
BspFNI CGCG 1 cut(s) 300
BspLI GGNNCC 1 cut(s) 520
BspPI GGATC 2 cut(s) 337, 542
BsrDI GCAATG 1 cut(s) 561
BsrI ACTGG 2 cut(s) 331, 364
BssHII GCGCGC 1 cut(s) 298
BssMI GATC 6 cut(s) 46, 76, 139, 329, 388, 534
Bst2UI CCWGG 1 cut(s) 643
BstC8I GCNNGC 2 cut(s) 300, 347
BstDEI CTNAG 2 cut(s) 254, 421
BstFNI CGCG 1 cut(s) 300
BstHHI GCGC 3 cut(s) 202, 300, 302
BstKTI GATC 6 cut(s) 49, 79, 142, 332, 391, 537
BstMAI GTCTC 1 cut(s) 682
BstMBI GATC 6 cut(s) 46, 76, 139, 329, 388, 534
BstNI CCWGG 1 cut(s) 643
BstNSI RCATGY 2 cut(s) 152, 418
BstSCI CCNGG 1 cut(s) 641
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 548
BstX2I RGATCY 3 cut(s) 76, 139, 329
BstYI RGATCY 3 cut(s) 76, 139, 329
Cac8I GCNNGC 2 cut(s) 300, 347
CfoI GCGC 3 cut(s) 202, 300, 302
Cfr13I GGNCC 1 cut(s) 361
Csp6I GTAC 1 cut(s) 418
CviAII CATG 2 cut(s) 149, 415
CviJI RGCY 5 cut(s) 155, 215, 229, 473, 519
CviKI_1 RGCY 5 cut(s) 155, 215, 229, 473, 519
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 254, 421
DpnI GATC 6 cut(s) 48, 78, 141, 331, 390, 536
DpnII GATC 6 cut(s) 46, 76, 139, 329, 388, 534
Eco47I GGWCC 1 cut(s) 361
EcoRII CCWGG 1 cut(s) 641
Esp3I CGTCTC 1 cut(s) 682
FaeI CATG 2 cut(s) 152, 418
FatI CATG 2 cut(s) 148, 414
FbaI TGATCA 1 cut(s) 388
Fnu4HI GCNGC 2 cut(s) 471, 562
Fsp4HI GCNGC 2 cut(s) 471, 562
FspBI CTAG 1 cut(s) 20
FspI TGCGCA 1 cut(s) 201
GlaI GCGC 3 cut(s) 201, 299, 301
GluI GCNGC 2 cut(s) 471, 562
HhaI GCGC 3 cut(s) 202, 300, 302
Hin1II CATG 2 cut(s) 152, 418
Hin6I GCGC 3 cut(s) 200, 298, 300
HinP1I GCGC 3 cut(s) 200, 298, 300
HinfI GANTC 1 cut(s) 425
HphI GGTGA 1 cut(s) 628
Hpy166II GTNNAC 1 cut(s) 260
Hpy188I TCNGA 2 cut(s) 424, 539
Hpy8I GTNNAC 1 cut(s) 260
Hpy99I CGWCG 1 cut(s) 247
HpyAV CCTTC 1 cut(s) 497
HpyCH4IV ACGT 1 cut(s) 691
HpyCH4V TGCA 7 cut(s) 86, 121, 377, 554, 564, 590, 697
HpyF3I CTNAG 2 cut(s) 254, 421
HpySE526I ACGT 1 cut(s) 691
Hsp92II CATG 2 cut(s) 152, 418
HspAI GCGC 3 cut(s) 200, 298, 300
Ksp22I TGATCA 1 cut(s) 388
Kzo9I GATC 6 cut(s) 46, 76, 139, 329, 388, 534
LmnI GCTCC 2 cut(s) 39, 524
LpnPI CCDG 5 cut(s) 312, 377, 414, 628, 655
Lsp1109I GCAGC 1 cut(s) 548
MaeI CTAG 1 cut(s) 20
MaeII ACGT 1 cut(s) 691
MalI GATC 6 cut(s) 48, 78, 141, 331, 390, 536
MboI GATC 6 cut(s) 46, 76, 139, 329, 388, 534
MboII GAAGA 1 cut(s) 134
MflI RGATCY 3 cut(s) 76, 139, 329
MluCI AATT 7 cut(s) 87, 175, 269, 316, 402, 581, 635
MmeI TCCRAC 2 cut(s) 157, 546
MnlI CCTC 2 cut(s) 263, 408
MseI TTAA 3 cut(s) 164, 668, 700
MspR9I CCNGG 1 cut(s) 643
MvaI CCWGG 1 cut(s) 643
MvnI CGCG 1 cut(s) 300
NdeII GATC 6 cut(s) 46, 76, 139, 329, 388, 534
NlaIII CATG 2 cut(s) 152, 418
NlaIV GGNNCC 1 cut(s) 520
NsbI TGCGCA 1 cut(s) 201
NspI RCATGY 2 cut(s) 152, 418
PauI GCGCGC 1 cut(s) 298
PciI ACATGT 2 cut(s) 148, 414
PfeI GAWTC 1 cut(s) 425
PfoI TCCNGGA 1 cut(s) 641
PkrI GCNGC 2 cut(s) 472, 563
PscI ACATGT 2 cut(s) 148, 414
Psp6I CCWGG 1 cut(s) 641
PspGI CCWGG 1 cut(s) 641
PspN4I GGNNCC 1 cut(s) 520
PspPI GGNCC 1 cut(s) 361
PsuI RGATCY 3 cut(s) 76, 139, 329
PteI GCGCGC 1 cut(s) 298
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
SaqAI TTAA 3 cut(s) 164, 668, 700
SatI GCNGC 2 cut(s) 471, 562
Sau3AI GATC 6 cut(s) 46, 76, 139, 329, 388, 534
Sau96I GGNCC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 643
SetI ASST 6 cut(s) 157, 196, 400, 433, 489, 694
SinI GGWCC 1 cut(s) 361
SpeI ACTAGT 1 cut(s) 19
Sse9I AATT 7 cut(s) 87, 175, 269, 316, 402, 581, 635
SsiI CCGC 1 cut(s) 470
SspI AATATT 3 cut(s) 162, 464, 673
SspMI CTAG 1 cut(s) 20
StyD4I CCNGG 1 cut(s) 641
TaiI ACGT 1 cut(s) 694
TaqI TCGA 2 cut(s) 242, 490
TasI AATT 7 cut(s) 87, 175, 269, 316, 402, 581, 635
TatI WGTACW 1 cut(s) 417
TauI GCSGC 1 cut(s) 473
TfiI GAWTC 1 cut(s) 425
Tru1I TTAA 3 cut(s) 164, 668, 700
Tru9I TTAA 3 cut(s) 164, 668, 700
TseI GCWGC 1 cut(s) 561
TspDTI ATGAA 1 cut(s) 666
VpaK11BI GGWCC 1 cut(s) 361
XapI RAATTY 5 cut(s) 269, 316, 402, 581, 635
XceI RCATGY 2 cut(s) 152, 418
XspI CTAG 1 cut(s) 20
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.