pycom07g08910

Peptidyl-prolyl cis-trans isomerase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
8109967 .. 8110490
524 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 237 bp
ATGAACAAAACAAGTTTTCGGGTTCAGGTAGTAACGCCACCGAACTACATAACATGTGACTCGGGGCTTATGCTTCGGGATTTTGTAGCTGGTGAAGGTGATTGCCCAGAGGCTGGCCAGCAGGTGATGTTCCACTACGTTGGCTACAACGAGTCAGGCCGGCTGATTGACAGCAGCTACACGCAGGGTTCTCCTGCCAGAATCCGCATGGGCACAAATGCATTGGTTCCAGGTTAA

Protein Analysis

79

Amino Acids

8.5

Weight (kDa)

5.59

Isoelectric Point (pI)

41.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FKBP_C PF00254 36 - 78 3.4e-06 FKBP-type peptidyl-prolyl cis-trans isomerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccB7I CCANNNNNTGG 1 cut(s) 113
AciI CCGC 1 cut(s) 205
AcoI YGGCCR 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 53
AjnI CCWGG 1 cut(s) 229
AluBI AGCT 2 cut(s) 89, 177
AluI AGCT 2 cut(s) 89, 177
AlwNI CAGNNNCTG 1 cut(s) 113
Ama87I CYCGRG 1 cut(s) 61
AoxI GGCC 2 cut(s) 115, 157
ApeKI GCWGC 1 cut(s) 174
AsuHPI GGTGA 3 cut(s) 104, 110, 136
AvaI CYCGRG 1 cut(s) 61
BaeGI GKGCMC 1 cut(s) 215
BalI TGGCCA 1 cut(s) 117
BbvI GCAGC 1 cut(s) 186
BciT130I CCWGG 1 cut(s) 231
BfuAI ACCTGC 1 cut(s) 112
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme1390I CCNGG 1 cut(s) 231
BmeT110I CYCGRG 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 228
BmrFI CCNGG 1 cut(s) 231
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse118I RCCGGY 1 cut(s) 159
BseBI CCWGG 1 cut(s) 231
BseLI CCNNNNNNNGG 1 cut(s) 113
BseSI GKGCMC 1 cut(s) 215
BseXI GCAGC 1 cut(s) 186
BshFI GGCC 2 cut(s) 117, 159
BsiHKCI CYCGRG 1 cut(s) 61
BsiSI CCGG 1 cut(s) 160
BslI CCNNNNNNNGG 1 cut(s) 113
BsnI GGCC 2 cut(s) 117, 159
BsoBI CYCGRG 1 cut(s) 61
Bsp1286I GDGCHC 1 cut(s) 215
BspACI CCGC 1 cut(s) 205
BspANI GGCC 2 cut(s) 117, 159
BspLI GGNNCC 1 cut(s) 228
BspMI ACCTGC 1 cut(s) 112
BsrFI RCCGGY 1 cut(s) 159
BssAI RCCGGY 1 cut(s) 159
Bst2UI CCWGG 1 cut(s) 231
BstC8I GCNNGC 3 cut(s) 115, 119, 161
BstNI CCWGG 1 cut(s) 231
BstNSI RCATGY 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 229
BstSLI GKGCMC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 186
BstXI CCANNNNNNTGG 1 cut(s) 140
BsuRI GGCC 2 cut(s) 117, 159
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 3 cut(s) 115, 119, 161
CaiI CAGNNNCTG 1 cut(s) 113
Cfr10I RCCGGY 1 cut(s) 159
CviAII CATG 2 cut(s) 54, 208
CviJI RGCY 8 cut(s) 67, 89, 113, 117, 144, 159, 163, 177
CviKI_1 RGCY 8 cut(s) 67, 89, 113, 117, 144, 159, 163, 177
EaeI YGGCCR 1 cut(s) 115
Eco88I CYCGRG 1 cut(s) 61
EcoRII CCWGG 1 cut(s) 229
EcoT22I ATGCAT 1 cut(s) 223
FaeI CATG 2 cut(s) 57, 211
FaiI YATR 4 cut(s) 50, 55, 71, 209
FatI CATG 2 cut(s) 53, 207
Fnu4HI GCNGC 1 cut(s) 175
Fsp4HI GCNGC 1 cut(s) 175
GluI GCNGC 1 cut(s) 175
HaeIII GGCC 2 cut(s) 117, 159
HapII CCGG 1 cut(s) 160
Hin1II CATG 2 cut(s) 57, 211
HinfI GANTC 3 cut(s) 59, 152, 201
HpaII CCGG 1 cut(s) 160
HphI GGTGA 3 cut(s) 104, 110, 136
Hpy188III TCNNGA 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 89
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 2 cut(s) 57, 211
KroI GCCGGC 1 cut(s) 159
KroNI GCCGGC 1 cut(s) 161
Lsp1109I GCAGC 1 cut(s) 186
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 2 cut(s) 31, 56
MhlI GDGCHC 1 cut(s) 215
MlsI TGGCCA 1 cut(s) 117
MluNI TGGCCA 1 cut(s) 117
MlyI GAGTC 2 cut(s) 53, 161
MnlI CCTC 1 cut(s) 103
Mox20I TGGCCA 1 cut(s) 117
Mph1103I ATGCAT 1 cut(s) 223
MroNI GCCGGC 1 cut(s) 159
MscI TGGCCA 1 cut(s) 117
MseI TTAA 1 cut(s) 235
Msp20I TGGCCA 1 cut(s) 117
MspI CCGG 1 cut(s) 160
MspR9I CCNGG 1 cut(s) 231
MvaI CCWGG 1 cut(s) 231
NaeI GCCGGC 1 cut(s) 161
NgoMIV GCCGGC 1 cut(s) 159
NlaIII CATG 2 cut(s) 57, 211
NlaIV GGNNCC 1 cut(s) 228
NmuCI GTSAC 1 cut(s) 56
NsiI ATGCAT 1 cut(s) 223
NspI RCATGY 1 cut(s) 57
PaqCI CACCTGC 1 cut(s) 112
PciI ACATGT 1 cut(s) 53
PdiI GCCGGC 1 cut(s) 161
PfeI GAWTC 1 cut(s) 201
PflMI CCANNNNNTGG 1 cut(s) 113
PkrI GCNGC 1 cut(s) 176
PleI GAGTC 2 cut(s) 53, 160
PpsI GAGTC 2 cut(s) 53, 160
PscI ACATGT 1 cut(s) 53
Psp6I CCWGG 1 cut(s) 229
PspGI CCWGG 1 cut(s) 229
PspN4I GGNNCC 1 cut(s) 228
PstNI CAGNNNCTG 1 cut(s) 113
SaqAI TTAA 1 cut(s) 235
SatI GCNGC 1 cut(s) 175
SchI GAGTC 2 cut(s) 53, 161
ScrFI CCNGG 1 cut(s) 231
SduI GDGCHC 1 cut(s) 215
SetI ASST 7 cut(s) 30, 91, 100, 126, 141, 179, 235
SsiI CCGC 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 229
TaiI ACGT 1 cut(s) 141
TfiI GAWTC 1 cut(s) 201
Tru1I TTAA 1 cut(s) 235
Tru9I TTAA 1 cut(s) 235
TseFI GTSAC 1 cut(s) 56
TseI GCWGC 1 cut(s) 174
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 113
XceI RCATGY 1 cut(s) 57
XcmI CCANNNNNNNNNTGG 1 cut(s) 205
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.