pycom07g09750

CCR4-NOT transcription complex subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
9133322 .. 9133748
427 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 261 bp
ATGCGATTGCGAACCAACTGCGTTATCCAAACACGCATACCCATTACTTTTCCTTCATTGCTTTCTACTTGTTTGCTGAATCAAACCAGGGTATTGTTGAAATTTTTTCAGAATCCGAGATACCATTTCTGGAACCGAGCTTTCATCAGATGTGCGCCGGAGATTGAAAAACTATTTGAATCTGTCTCAAGGTCTTGCGGGGGACCAAAACCAGTGGACGAAAGTATGGTCTCAGGCTGGGTGTCGGAGAGTGGCCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling

Protein Analysis

87

Amino Acids

9.93

Weight (kDa)

9.49

Isoelectric Point (pI)

46.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 198
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 101
AgsI TTSAA 3 cut(s) 100, 167, 179
AjnI CCWGG 1 cut(s) 86
AluBI AGCT 1 cut(s) 140
AluI AGCT 1 cut(s) 140
Alw26I GTCTC 2 cut(s) 190, 235
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 101
ArsI GACNNNNNNTTYG 2 cut(s) 213, 245
AspLEI GCGC 1 cut(s) 157
AspS9I GGNCC 1 cut(s) 203
AvaII GGWCC 1 cut(s) 203
BalI TGGCCA 1 cut(s) 255
BcgI CGANNNNNNTGC 1 cut(s) 34
BciT130I CCWGG 1 cut(s) 88
BcoDI GTCTC 2 cut(s) 190, 235
Bme1390I CCNGG 1 cut(s) 88
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 134, 204
BmrFI CCNGG 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 172
BsaI GGTCTC 1 cut(s) 235
BsaJI CCNNGG 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 212
Bse3DI GCAATG 1 cut(s) 56
BseBI CCWGG 1 cut(s) 88
BseDI CCNNGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 56
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 1 cut(s) 212
BseYI CCCAGC 1 cut(s) 237
BshFI GGCC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 216
BsmAI GTCTC 2 cut(s) 190, 235
BsmFI GGGAC 1 cut(s) 216
BsnI GGCC 1 cut(s) 255
Bso31I GGTCTC 1 cut(s) 235
BspACI CCGC 1 cut(s) 198
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 245
BspLI GGNNCC 2 cut(s) 134, 204
BspTNI GGTCTC 1 cut(s) 235
BsrDI GCAATG 1 cut(s) 56
BsrI ACTGG 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 87
Bst2UI CCWGG 1 cut(s) 88
BstDEI CTNAG 1 cut(s) 232
BstHHI GCGC 1 cut(s) 157
BstMAI GTCTC 2 cut(s) 190, 235
BstNI CCWGG 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 86
BsuRI GGCC 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 219
CfoI GCGC 1 cut(s) 157
Cfr13I GGNCC 1 cut(s) 203
CspCI CAANNNNNGTGG 2 cut(s) 195, 230
CviJI RGCY 3 cut(s) 140, 237, 255
CviKI_1 RGCY 3 cut(s) 140, 237, 255
DdeI CTNAG 1 cut(s) 232
EaeI YGGCCR 1 cut(s) 253
Eco31I GGTCTC 1 cut(s) 235
Eco47I GGWCC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 86
FaiI YATR 2 cut(s) 38, 227
FaqI GGGAC 1 cut(s) 216
FauI CCCGC 1 cut(s) 191
GlaI GCGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 241
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 158
HhaI GCGC 1 cut(s) 157
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HinfI GANTC 3 cut(s) 79, 112, 179
HpaII CCGG 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 4 cut(s) 111, 117, 149, 247
Hpy188III TCNNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 217
HpyAV CCTTC 1 cut(s) 63
HpyF3I CTNAG 1 cut(s) 232
HspAI GCGC 1 cut(s) 155
LpnPI CCDG 7 cut(s) 73, 100, 115, 171, 219, 223, 225
MlsI TGGCCA 1 cut(s) 255
MluCI AATT 1 cut(s) 101
MluNI TGGCCA 1 cut(s) 255
MmeI TCCRAC 1 cut(s) 225
Mox20I TGGCCA 1 cut(s) 255
MscI TGGCCA 1 cut(s) 255
Msp20I TGGCCA 1 cut(s) 255
MspI CCGG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 88
MvaI CCWGG 1 cut(s) 88
NlaIV GGNNCC 2 cut(s) 134, 204
PfeI GAWTC 3 cut(s) 79, 112, 179
Psp6I CCWGG 1 cut(s) 86
PspFI CCCAGC 1 cut(s) 237
PspGI CCWGG 1 cut(s) 86
PspN4I GGNNCC 2 cut(s) 134, 204
PspPI GGNCC 1 cut(s) 203
Sau96I GGNCC 1 cut(s) 203
ScrFI CCNGG 1 cut(s) 88
SetI ASST 2 cut(s) 142, 194
SinI GGWCC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 187
SmoI CTYRAG 1 cut(s) 187
Sse9I AATT 1 cut(s) 101
SsiI CCGC 1 cut(s) 198
StyD4I CCNGG 1 cut(s) 86
TasI AATT 1 cut(s) 101
TfiI GAWTC 3 cut(s) 79, 112, 179
TscAI CASTG 1 cut(s) 219
TspDTI ATGAA 2 cut(s) 45, 133
TspRI CASTG 1 cut(s) 219
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.