pycom07g10980

transposition, RNA-mediated

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
11334375 .. 11335308
934 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 390 bp
ATGATATCAAGGAAGAGCTTTGCCATTGGACAAAAAGTTCTTCTATTTAATTCTCACCTTCGGTTATTTCCAGGTAAGCTTCGTTCTCGATGGGTTGGTCTGTTTGTTATAACTAATATTTTTCCTCATGGTGCAGTGGAAATCCAAAGTGCAAAGACCAGAAACGTGTTCAAAGTGAATGGACATAGACTCAAACCATATTACGAGTCTTTTGCGGAGCATGATGTGGAGGTTATACCCCTCCAAGAACCAGCTTCCCTTGAAGAATCTTTGGTTATGTTCACCCTTGGAGTTGATTGCAGAATTGAAGTTTGGGGGTCATCACTTGATTTTATTGCAAATTGGGGAATGAGGGATCGTTCTAGACCGGGGATTAGGAGGGCTTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

14.79

Weight (kDa)

9.82

Isoelectric Point (pI)

51.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 110
AciI CCGC 1 cut(s) 215
AclWI GGATC 1 cut(s) 363
AflIII ACRYGT 1 cut(s) 165
AgsI TTSAA 3 cut(s) 172, 263, 308
AjnI CCWGG 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 295, 327
AloI GAACNNNNNNTCC 2 cut(s) 21, 53
AluBI AGCT 3 cut(s) 18, 79, 254
AluI AGCT 3 cut(s) 18, 79, 254
AlwI GGATC 1 cut(s) 363
AsuC2I CCSGG 1 cut(s) 369
AsuHPI GGTGA 2 cut(s) 47, 274
BccI CCATC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 194, 228
BciT130I CCWGG 1 cut(s) 72
BcnI CCSGG 1 cut(s) 369
BfaI CTAG 1 cut(s) 363
Bme1390I CCNGG 2 cut(s) 72, 369
BmrFI CCNGG 2 cut(s) 72, 369
BpuMI CCSGG 1 cut(s) 369
BsaJI CCNNGG 2 cut(s) 286, 368
BseBI CCWGG 1 cut(s) 72
BseDI CCNNGG 2 cut(s) 286, 368
BsgI GTGCAG 1 cut(s) 153
BsiSI CCGG 1 cut(s) 368
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 1 cut(s) 215
BspPI GGATC 1 cut(s) 363
BspQI GCTCTTC 1 cut(s) 8
BssECI CCNNGG 2 cut(s) 286, 368
BssMI GATC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 286
Bst2UI CCWGG 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 385
BstKTI GATC 1 cut(s) 358
BstMBI GATC 1 cut(s) 355
BstNI CCWGG 1 cut(s) 72
BstSCI CCNGG 2 cut(s) 70, 367
BtsI GCAGTG 1 cut(s) 141
BtsIMutI CAGTG 1 cut(s) 141
Cac8I GCNNGC 1 cut(s) 385
CviAII CATG 2 cut(s) 128, 221
CviJI RGCY 4 cut(s) 18, 79, 254, 383
CviKI_1 RGCY 4 cut(s) 18, 79, 254, 383
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
Eam1104I CTCTTC 1 cut(s) 8
EarI CTCTTC 1 cut(s) 8
Eco130I CCWWGG 1 cut(s) 286
Eco32I GATATC 1 cut(s) 6
EcoRII CCWGG 1 cut(s) 70
EcoRV GATATC 1 cut(s) 6
EcoT14I CCWWGG 1 cut(s) 286
ErhI CCWWGG 1 cut(s) 286
FaeI CATG 2 cut(s) 131, 224
FaiI YATR 7 cut(s) 110, 129, 186, 199, 222, 236, 278
FatI CATG 2 cut(s) 127, 220
FspBI CTAG 1 cut(s) 363
HapII CCGG 1 cut(s) 368
Hin1II CATG 2 cut(s) 131, 224
HindIII AAGCTT 1 cut(s) 77
HinfI GANTC 3 cut(s) 189, 206, 266
HpaII CCGG 1 cut(s) 368
HphI GGTGA 2 cut(s) 47, 274
Hpy166II GTNNAC 1 cut(s) 282
Hpy188III TCNNGA 2 cut(s) 87, 363
Hpy8I GTNNAC 1 cut(s) 282
HpyAV CCTTC 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 165
HpyCH4V TGCA 4 cut(s) 134, 152, 300, 338
HpySE526I ACGT 1 cut(s) 165
Hsp92II CATG 2 cut(s) 131, 224
Kzo9I GATC 1 cut(s) 355
LguI GCTCTTC 1 cut(s) 8
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 5 cut(s) 57, 84, 172, 264, 381
MaeI CTAG 1 cut(s) 363
MaeII ACGT 1 cut(s) 165
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 3 cut(s) 25, 32, 275
MluCI AATT 3 cut(s) 49, 303, 340
MlyI GAGTC 2 cut(s) 183, 215
MnlI CCTC 5 cut(s) 135, 223, 251, 345, 372
MseI TTAA 1 cut(s) 48
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 2 cut(s) 72, 369
MvaI CCWGG 1 cut(s) 72
NciI CCSGG 1 cut(s) 369
NdeII GATC 1 cut(s) 355
NlaIII CATG 2 cut(s) 131, 224
PciSI GCTCTTC 1 cut(s) 8
PfeI GAWTC 1 cut(s) 266
PleI GAGTC 2 cut(s) 183, 214
PpsI GAGTC 2 cut(s) 183, 214
PsiI TTATAA 1 cut(s) 110
Psp6I CCWGG 1 cut(s) 70
PspGI CCWGG 1 cut(s) 70
PsrI GAACNNNNNNTAC 2 cut(s) 67, 99
SapI GCTCTTC 1 cut(s) 8
SaqAI TTAA 1 cut(s) 48
Sau3AI GATC 1 cut(s) 355
SchI GAGTC 2 cut(s) 183, 215
ScrFI CCNGG 2 cut(s) 72, 369
SetI ASST 7 cut(s) 20, 60, 76, 81, 168, 234, 256
Sse9I AATT 3 cut(s) 49, 303, 340
SsiI CCGC 1 cut(s) 215
SspI AATATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 2 cut(s) 70, 367
StyI CCWWGG 1 cut(s) 286
TaiI ACGT 1 cut(s) 168
TaqI TCGA 1 cut(s) 88
TasI AATT 3 cut(s) 49, 303, 340
TfiI GAWTC 1 cut(s) 266
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TscAI CASTG 1 cut(s) 141
TspRI CASTG 1 cut(s) 141
XbaI TCTAGA 1 cut(s) 362
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.