pycom07g11090

AT-hook motif nuclear-localized protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
11496711 .. 11497422
712 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 537 bp
ATGTCTGGGACGTTTATGATACATGACAAGGAAGGAACTAGGCGTGGTGCCATGACTGTTCATTTGGCAGATTCTGATGGTCGTGTTTTACTGGGAGCTGTAGGAGGAGCTCTGATAGCTGCCACTCCTGTGCAGGTCTTCATAGGGAGCTTCACCGCAGGACCACAAAAAATAACACCAAAGGCTGAGAAGCCCGACCAAGAACCAAATGTGGAGGAGCCCGGGGCAGAACCAAACGTGAAGACGCCCGAGCCAGAACCAAATGTTGAGACGCCCAGGCCAGAACCAAATGTGGAGACGCTCGGGCTTGAACCAAATATTGGGACGCCCCTGCCAGAGCCAAATGTAGGGCCAGACGTTGAGATGCCCAGGCCAGAACCAAATGTTGGCGTCGCACCTTTTGATGGTAACCAACTTTTTTATCCTCCAAATCCAAACTTCGGATATTCCTTACCTCCCCAAGGAGAAGATTCGGGACAGTGGTGGAATAATCCATTCGACTCGCTAGACGATCTCAATTTTTCCGATTTTCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF296

Protein Analysis

179

Amino Acids

19.15

Weight (kDa)

4.2

Isoelectric Point (pI)

48.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 124
AccB1I GGYRCC 1 cut(s) 47
AccB7I CCANNNNNTGG 2 cut(s) 320, 386
AciI CCGC 1 cut(s) 156
AcyI GRCGYC 4 cut(s) 245, 272, 326, 390
AfiI CCNNNNNNNGG 6 cut(s) 320, 347, 386, 404, 440, 461
AgsI TTSAA 1 cut(s) 311
AjnI CCWGG 2 cut(s) 275, 368
AjuI GAANNNNNNNTTGG 4 cut(s) 303, 335, 369, 401
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 4 cut(s) 98, 110, 119, 150
AluI AGCT 4 cut(s) 98, 110, 119, 150
Alw21I GWGCWC 1 cut(s) 112
Alw26I GTCTC 2 cut(s) 263, 290
AlwNI CAGNNNCTG 1 cut(s) 74
Ama87I CYCGRG 3 cut(s) 221, 248, 302
AoxI GGCC 3 cut(s) 278, 350, 371
ApeKI GCWGC 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 46, 78
AspS9I GGNCC 2 cut(s) 161, 350
AsuC2I CCSGG 2 cut(s) 222, 223
AsuHPI GGTGA 1 cut(s) 145
AvaI CYCGRG 3 cut(s) 221, 248, 302
AvaII GGWCC 1 cut(s) 161
BanI GGYRCC 1 cut(s) 47
BanII GRGCYC 2 cut(s) 112, 222
BbsI GAAGAC 2 cut(s) 130, 248
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 106
BccI CCATC 2 cut(s) 71, 398
BciT130I CCWGG 2 cut(s) 277, 370
BcnI CCSGG 2 cut(s) 222, 223
BcoDI GTCTC 2 cut(s) 263, 290
BfaI CTAG 2 cut(s) 39, 506
BfmI CTRYAG 1 cut(s) 99
BfuAI ACCTGC 1 cut(s) 124
BisI GCNGC 1 cut(s) 120
BlsI GCNGC 1 cut(s) 121
Bme1390I CCNGG 4 cut(s) 222, 223, 277, 370
Bme18I GGWCC 1 cut(s) 161
BmeT110I CYCGRG 3 cut(s) 221, 248, 302
BmgT120I GGNCC 2 cut(s) 161, 350
BmiI GGNNCC 2 cut(s) 49, 219
BmrFI CCNGG 4 cut(s) 222, 223, 277, 370
BmrI ACTGGG 1 cut(s) 101
BmsI GCATC 1 cut(s) 354
BmuI ACTGGG 1 cut(s) 101
BpiI GAAGAC 2 cut(s) 130, 248
BpuMI CCSGG 2 cut(s) 222, 223
BsaHI GRCGYC 4 cut(s) 245, 272, 326, 390
BsaJI CCNNGG 5 cut(s) 221, 222, 275, 368, 460
Bsc4I CCNNNNNNNGG 6 cut(s) 320, 347, 386, 404, 440, 461
Bse1I ACTGG 1 cut(s) 96
BseBI CCWGG 2 cut(s) 277, 370
BseDI CCNNGG 5 cut(s) 221, 222, 275, 368, 460
BseLI CCNNNNNNNGG 6 cut(s) 320, 347, 386, 404, 440, 461
BseMII CTCAG 1 cut(s) 177
BseNI ACTGG 1 cut(s) 96
BseRI GAGGAG 2 cut(s) 120, 230
BseXI GCAGC 1 cut(s) 106
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 3 cut(s) 280, 352, 373
BshNI GGYRCC 1 cut(s) 47
BsiHKAI GWGCWC 1 cut(s) 112
BsiHKCI CYCGRG 3 cut(s) 221, 248, 302
BsiSI CCGG 1 cut(s) 222
BslFI GGGAC 3 cut(s) 22, 337, 489
BslI CCNNNNNNNGG 6 cut(s) 320, 347, 386, 404, 440, 461
BsmAI GTCTC 2 cut(s) 263, 290
BsmBI CGTCTC 2 cut(s) 263, 290
BsmFI GGGAC 3 cut(s) 22, 337, 489
BsnI GGCC 3 cut(s) 280, 352, 373
BsoBI CYCGRG 3 cut(s) 221, 248, 302
Bsp1286I GDGCHC 2 cut(s) 112, 222
Bsp143I GATC 1 cut(s) 511
BspACI CCGC 1 cut(s) 156
BspANI GGCC 3 cut(s) 280, 352, 373
BspCNI CTCAG 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 49, 219
BspMI ACCTGC 1 cut(s) 124
BspT107I GGYRCC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 96
BssECI CCNNGG 5 cut(s) 221, 222, 275, 368, 460
BssMI GATC 1 cut(s) 511
BssNI GRCGYC 4 cut(s) 245, 272, 326, 390
BssT1I CCWWGG 1 cut(s) 460
Bst2UI CCWGG 2 cut(s) 277, 370
Bst4CI ACNGT 2 cut(s) 58, 480
BstACI GRCGYC 4 cut(s) 245, 272, 326, 390
BstDEI CTNAG 1 cut(s) 186
BstEII GGTNACC 1 cut(s) 407
BstENI CCTNNNNNAGG 1 cut(s) 459
BstKTI GATC 1 cut(s) 514
BstMAI GTCTC 2 cut(s) 263, 290
BstMBI GATC 1 cut(s) 511
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 2 cut(s) 277, 370
BstPI GGTNACC 1 cut(s) 407
BstSCI CCNGG 4 cut(s) 220, 221, 275, 368
BstSFI CTRYAG 1 cut(s) 99
BstV1I GCAGC 1 cut(s) 106
BstV2I GAAGAC 2 cut(s) 130, 248
BsuRI GGCC 3 cut(s) 280, 352, 373
BtsIMutI CAGTG 1 cut(s) 485
BveI ACCTGC 1 cut(s) 124
CaiI CAGNNNCTG 1 cut(s) 74
Cfr13I GGNCC 2 cut(s) 161, 350
Cfr9I CCCGGG 1 cut(s) 221
CseI GACGC 5 cut(s) 253, 280, 307, 334, 379
CviAII CATG 2 cut(s) 23, 52
DdeI CTNAG 1 cut(s) 186
DpnI GATC 1 cut(s) 513
DpnII GATC 1 cut(s) 511
Ecl136II GAGCTC 1 cut(s) 110
Eco130I CCWWGG 1 cut(s) 460
Eco24I GRGCYC 2 cut(s) 112, 222
Eco47I GGWCC 1 cut(s) 161
Eco53kI GAGCTC 1 cut(s) 110
Eco88I CYCGRG 3 cut(s) 221, 248, 302
Eco91I GGTNACC 1 cut(s) 407
EcoICRI GAGCTC 1 cut(s) 110
EcoNI CCTNNNNNAGG 1 cut(s) 459
EcoO65I GGTNACC 1 cut(s) 407
EcoRII CCWGG 2 cut(s) 275, 368
EcoT14I CCWWGG 1 cut(s) 460
EcoT38I GRGCYC 2 cut(s) 112, 222
ErhI CCWWGG 1 cut(s) 460
Esp3I CGTCTC 2 cut(s) 263, 290
FaeI CATG 2 cut(s) 26, 55
FaiI YATR 4 cut(s) 17, 24, 53, 143
FaqI GGGAC 3 cut(s) 22, 337, 489
FatI CATG 2 cut(s) 22, 51
Fnu4HI GCNGC 1 cut(s) 120
FriOI GRGCYC 2 cut(s) 112, 222
Fsp4HI GCNGC 1 cut(s) 120
FspBI CTAG 2 cut(s) 39, 506
GluI GCNGC 1 cut(s) 120
HaeIII GGCC 3 cut(s) 280, 352, 373
HapII CCGG 1 cut(s) 222
HgaI GACGC 5 cut(s) 253, 280, 307, 334, 379
Hin1I GRCGYC 4 cut(s) 245, 272, 326, 390
Hin1II CATG 2 cut(s) 26, 55
HinfI GANTC 3 cut(s) 71, 470, 500
HpaII CCGG 1 cut(s) 222
HphI GGTGA 1 cut(s) 145
Hpy188I TCNGA 4 cut(s) 76, 114, 443, 526
Hpy188III TCNNGA 1 cut(s) 474
Hpy99I CGWCG 1 cut(s) 395
HpyAV CCTTC 1 cut(s) 26
HpyCH4III ACNGT 2 cut(s) 58, 480
HpyCH4IV ACGT 3 cut(s) 11, 237, 357
HpyCH4V TGCA 1 cut(s) 133
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 1 cut(s) 186
HpySE526I ACGT 3 cut(s) 11, 237, 357
Hsp92I GRCGYC 4 cut(s) 245, 272, 326, 390
Hsp92II CATG 2 cut(s) 26, 55
Kzo9I GATC 1 cut(s) 511
LmnI GCTCC 4 cut(s) 95, 107, 147, 217
Lsp1109I GCAGC 1 cut(s) 106
LweI GCATC 1 cut(s) 354
MaeI CTAG 2 cut(s) 39, 506
MaeII ACGT 3 cut(s) 11, 237, 357
MaeIII GTNAC 1 cut(s) 407
MalI GATC 1 cut(s) 513
MboI GATC 1 cut(s) 511
MboII GAAGA 3 cut(s) 130, 253, 479
MhlI GDGCHC 2 cut(s) 112, 222
MluCI AATT 1 cut(s) 517
MlyI GAGTC 1 cut(s) 494
MnlI CCTC 4 cut(s) 98, 208, 435, 465
MslI CAYNNNNRTG 1 cut(s) 128
MspI CCGG 1 cut(s) 222
MspR9I CCNGG 4 cut(s) 222, 223, 277, 370
MvaI CCWGG 2 cut(s) 277, 370
MwoI GCNNNNNNNGC 1 cut(s) 116
NciI CCSGG 2 cut(s) 222, 223
NdeII GATC 1 cut(s) 511
NlaIII CATG 2 cut(s) 26, 55
NlaIV GGNNCC 2 cut(s) 49, 219
OliI CACNNNNGTG 1 cut(s) 128
PfeI GAWTC 2 cut(s) 71, 470
PflMI CCANNNNNTGG 2 cut(s) 320, 386
PkrI GCNGC 1 cut(s) 121
PleI GAGTC 1 cut(s) 494
PpsI GAGTC 1 cut(s) 494
Psp124BI GAGCTC 1 cut(s) 112
Psp6I CCWGG 2 cut(s) 275, 368
PspEI GGTNACC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 275, 368
PspN4I GGNNCC 2 cut(s) 49, 219
PspPI GGNCC 2 cut(s) 161, 350
PstNI CAGNNNCTG 1 cut(s) 74
RseI CAYNNNNRTG 1 cut(s) 128
SacI GAGCTC 1 cut(s) 112
SatI GCNGC 1 cut(s) 120
Sau3AI GATC 1 cut(s) 511
Sau96I GGNCC 2 cut(s) 161, 350
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 4 cut(s) 222, 223, 277, 370
SduI GDGCHC 2 cut(s) 112, 222
SfaNI GCATC 1 cut(s) 354
SfcI CTRYAG 1 cut(s) 99
SinI GGWCC 1 cut(s) 161
SmaI CCCGGG 1 cut(s) 223
SmiMI CAYNNNNRTG 1 cut(s) 128
Sse9I AATT 1 cut(s) 517
SsiI CCGC 1 cut(s) 156
SspI AATATT 1 cut(s) 319
SspMI CTAG 2 cut(s) 39, 506
SstI GAGCTC 1 cut(s) 112
StyD4I CCNGG 4 cut(s) 220, 221, 275, 368
StyI CCWWGG 1 cut(s) 460
TaaI ACNGT 2 cut(s) 58, 480
TaiI ACGT 3 cut(s) 14, 240, 360
TaqI TCGA 1 cut(s) 498
TasI AATT 1 cut(s) 517
TfiI GAWTC 2 cut(s) 71, 470
TscAI CASTG 1 cut(s) 485
TseI GCWGC 1 cut(s) 119
TspDTI ATGAA 2 cut(s) 50, 130
TspMI CCCGGG 1 cut(s) 221
TspRI CASTG 1 cut(s) 485
Van91I CCANNNNNTGG 2 cut(s) 320, 386
VpaK11BI GGWCC 1 cut(s) 161
XagI CCTNNNNNAGG 1 cut(s) 459
XmaI CCCGGG 1 cut(s) 221
XspI CTAG 2 cut(s) 39, 506
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.