pycom07g12890

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
14271853 .. 14272247
395 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGAAGATTGATGGAGCGGTTGGTGTTGCCGACGGCACTCGTGGAGTAGATGCTATAGTGCGTGATGCTGACGGAGAATTTAAAGGTGTTGTTGCTATGCCGACACCTCCATTACTCTCGGTTCTTGCGATTGAGCACCATGCAATCAAGGATGTTGTTTGCTTGGTTGCGGAAGAAGTGTATGTGGATGTTATACTTGCTCTGTTACAAACTAATCAGGTGGTGGTGACTCATGTATTAAGCGAGGTGTATAGCGTGACTCCGTTTAAGATCAGTATAGTTTGCAATGTCCAGAGTTATTGTTTTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

10.97

Weight (kDa)

4.7

Isoelectric Point (pI)

15.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 17
AciI CCGC 2 cut(s) 17, 170
AcsI RAATTY 1 cut(s) 77
Alw21I GWGCWC 1 cut(s) 138
ApoI RAATTY 1 cut(s) 77
AsuHPI GGTGA 1 cut(s) 238
BauI CACGAG 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 138
BccI CCATC 1 cut(s) 5
BceAI ACGGC 1 cut(s) 49
BfmI CTRYAG 1 cut(s) 54
BmsI GCATC 2 cut(s) 40, 55
Bse3DI GCAATG 1 cut(s) 292
BseGI GGATG 2 cut(s) 157, 193
BseMI GCAATG 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 138
Bsp143I GATC 1 cut(s) 270
BspACI CCGC 2 cut(s) 17, 170
BsrBI CCGCTC 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 292
BssMI GATC 1 cut(s) 270
BssSI CACGAG 1 cut(s) 39
Bst2BI CACGAG 1 cut(s) 39
BstF5I GGATG 2 cut(s) 157, 193
BstKTI GATC 1 cut(s) 273
BstMBI GATC 1 cut(s) 270
BstSFI CTRYAG 1 cut(s) 54
BtsCI GGATG 2 cut(s) 157, 193
CviAII CATG 2 cut(s) 140, 233
DpnI GATC 1 cut(s) 272
DpnII GATC 1 cut(s) 270
DraI TTTAAA 1 cut(s) 82
FaeI CATG 2 cut(s) 143, 236
FaiI YATR 8 cut(s) 56, 98, 141, 183, 194, 234, 252, 278
FatI CATG 2 cut(s) 139, 232
FokI GGATG 2 cut(s) 164, 200
Hin1II CATG 2 cut(s) 143, 236
HinfI GANTC 2 cut(s) 229, 259
HphI GGTGA 1 cut(s) 238
Hpy188III TCNNGA 1 cut(s) 292
Hpy99I CGWCG 1 cut(s) 35
HpyCH4V TGCA 2 cut(s) 143, 285
Hsp92II CATG 2 cut(s) 143, 236
Kzo9I GATC 1 cut(s) 270
LmnI GCTCC 1 cut(s) 14
LpnPI CCDG 2 cut(s) 203, 305
LweI GCATC 2 cut(s) 40, 55
MaeIII GTNAC 3 cut(s) 204, 226, 256
MalI GATC 1 cut(s) 272
MbiI CCGCTC 1 cut(s) 17
MboI GATC 1 cut(s) 270
MboII GAAGA 2 cut(s) 16, 185
MhlI GDGCHC 1 cut(s) 138
MluCI AATT 1 cut(s) 77
MlyI GAGTC 2 cut(s) 223, 253
MnlI CCTC 2 cut(s) 117, 238
MseI TTAA 3 cut(s) 81, 239, 267
NdeII GATC 1 cut(s) 270
NlaIII CATG 2 cut(s) 143, 236
NmuCI GTSAC 2 cut(s) 226, 256
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PleI GAGTC 2 cut(s) 223, 253
PpsI GAGTC 2 cut(s) 223, 253
SaqAI TTAA 3 cut(s) 81, 239, 267
Sau3AI GATC 1 cut(s) 270
SchI GAGTC 2 cut(s) 223, 253
SduI GDGCHC 1 cut(s) 138
SetI ASST 4 cut(s) 88, 109, 222, 249
SfaNI GCATC 2 cut(s) 40, 55
SfcI CTRYAG 1 cut(s) 54
Sse9I AATT 1 cut(s) 77
SsiI CCGC 2 cut(s) 17, 170
TasI AATT 1 cut(s) 77
Tru1I TTAA 3 cut(s) 81, 239, 267
Tru9I TTAA 3 cut(s) 81, 239, 267
TseFI GTSAC 2 cut(s) 226, 256
Tsp45I GTSAC 2 cut(s) 226, 256
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 2 cut(s) 87, 252
XapI RAATTY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.