pycom07g13240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
14850368 .. 14851635
1268 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
ATGTTACGTTGGGACATCAGAGTGAGACCTGTGGTGGAAACTGGGTATGAGAACCTGCTACTGGTGAGGTTGCTACTGGAAATGAGGATGCCTTCAATAAGGGAGTCCTCGGTTGCGGAAGGGCTCACCGTGGAGGGGATACTGGAGAAGTGGTCGGAACTGAAGCCGATGATTATGGCAGAATGGGGGGAAGAAAGGGATGCTCTTATTCATCTTTTTGGGAAGGTCAGGGATGAACGGATGGATGAAGACTTGACAACTTGGATTGGTGCAAATAGAATATATCCAGGTGTTCCTGATGCTCTAAGATTTGCAAGCTCAAGCATGTACAGTCACCACAAAACAGGTGTGGCCCTTACATACGCAGCATCTATGGCATCAGAAATTTCGGGTTTTCCTTCTCCCGGAAGAGAAAGAAAATCTGGAGAGTACAGTTCTCTGTTTCGCCCCTGTCAATCTCTCGCCTCCTTATTTCCCCATTCTTCTTTTGCACAGGCCAGACTTGCTGATGCTTTGCTGCGAGAACTTGCAGGAGTTACAATACCGCCCGAAAAGATATTCGGTCTTGGAAGTGAGTTAGTTATTGAATTCGTGTTCTCTTACAGTCCCAAGGTAGAAGTACTGAAGCAACTTCAAAAGAAACCAGAGCATCAGGGGCTGAAACTGCAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.14

Weight (kDa)

6.24

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 63
AciI CCGC 2 cut(s) 116, 545
AcsI RAATTY 2 cut(s) 384, 587
AcuI CTGAAG 2 cut(s) 182, 644
AfaI GTAC 3 cut(s) 329, 431, 621
AfiI CCNNNNNNNGG 3 cut(s) 61, 135, 404
AgsI TTSAA 3 cut(s) 96, 587, 635
AjnI CCWGG 1 cut(s) 286
AluBI AGCT 1 cut(s) 318
AluI AGCT 1 cut(s) 318
Alw26I GTCTC 1 cut(s) 19
AlwNI CAGNNNCTG 1 cut(s) 658
AoxI GGCC 2 cut(s) 351, 495
ApeKI GCWGC 2 cut(s) 365, 517
ApoI RAATTY 2 cut(s) 384, 587
AspS9I GGNCC 1 cut(s) 352
AsuC2I CCSGG 1 cut(s) 405
AsuHPI GGTGA 3 cut(s) 76, 118, 326
BanII GRGCYC 1 cut(s) 126
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 2 cut(s) 377, 504
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 288
BciVI GTATCC 1 cut(s) 132
BcnI CCSGG 1 cut(s) 405
BcoDI GTCTC 1 cut(s) 19
BfmI CTRYAG 1 cut(s) 665
BfuAI ACCTGC 1 cut(s) 63
BfuI GTATCC 1 cut(s) 132
BisI GCNGC 2 cut(s) 366, 518
BlsI GCNGC 2 cut(s) 367, 519
BmcAI AGTACT 1 cut(s) 621
Bme1390I CCNGG 2 cut(s) 288, 405
BmgT120I GGNCC 1 cut(s) 352
BmrFI CCNGG 2 cut(s) 288, 405
BmrI ACTGGG 1 cut(s) 51
BmsI GCATC 7 cut(s) 78, 190, 289, 377, 386, 499, 658
BmuI ACTGGG 1 cut(s) 51
BpiI GAAGAC 1 cut(s) 255
BpmI CTGGAG 2 cut(s) 164, 444
BpuEI CTTGAG 1 cut(s) 304
BpuMI CCSGG 1 cut(s) 405
BsaI GGTCTC 1 cut(s) 19
BsaJI CCNNGG 3 cut(s) 108, 129, 609
BsaXI ACNNNNNCTCC 2 cut(s) 137, 167
Bsc4I CCNNNNNNNGG 3 cut(s) 61, 135, 404
Bse1I ACTGG 4 cut(s) 46, 66, 81, 147
BseBI CCWGG 1 cut(s) 288
BseDI CCNNGG 3 cut(s) 108, 129, 609
BseGI GGATG 5 cut(s) 93, 205, 238, 246, 250
BseLI CCNNNNNNNGG 3 cut(s) 61, 135, 404
BseNI ACTGG 4 cut(s) 46, 66, 81, 147
BseXI GCAGC 2 cut(s) 377, 504
BshFI GGCC 2 cut(s) 353, 497
BsiSI CCGG 1 cut(s) 405
BslFI GGGAC 2 cut(s) 26, 591
BslI CCNNNNNNNGG 3 cut(s) 61, 135, 404
BsmAI GTCTC 1 cut(s) 19
BsmFI GGGAC 2 cut(s) 26, 591
BsnI GGCC 2 cut(s) 353, 497
Bso31I GGTCTC 1 cut(s) 19
Bsp1286I GDGCHC 1 cut(s) 126
Bsp1407I TGTACA 1 cut(s) 327
BspACI CCGC 2 cut(s) 116, 545
BspANI GGCC 2 cut(s) 353, 497
BspMAI CTGCAG 1 cut(s) 669
BspMI ACCTGC 1 cut(s) 63
BspTNI GGTCTC 1 cut(s) 19
BsrGI TGTACA 1 cut(s) 327
BsrI ACTGG 4 cut(s) 46, 66, 81, 147
BssECI CCNNGG 3 cut(s) 108, 129, 609
BssT1I CCWWGG 1 cut(s) 609
Bst2UI CCWGG 1 cut(s) 288
Bst4CI ACNGT 4 cut(s) 130, 332, 434, 605
Bst6I CTCTTC 1 cut(s) 403
BstAUI TGTACA 1 cut(s) 327
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 1 cut(s) 305
BstDSI CCRYGG 1 cut(s) 129
BstF5I GGATG 5 cut(s) 93, 205, 238, 246, 250
BstMAI GTCTC 1 cut(s) 19
BstMWI GCNNNNNNNGC 4 cut(s) 374, 503, 655, 664
BstNI CCWGG 1 cut(s) 288
BstNSI RCATGY 1 cut(s) 328
BstSCI CCNGG 2 cut(s) 286, 403
BstSFI CTRYAG 1 cut(s) 665
BstV1I GCAGC 2 cut(s) 377, 504
BstV2I GAAGAC 1 cut(s) 255
BsuI GTATCC 1 cut(s) 132
BsuRI GGCC 2 cut(s) 353, 497
BtgI CCRYGG 1 cut(s) 129
BtsCI GGATG 5 cut(s) 93, 205, 238, 246, 250
BveI ACCTGC 1 cut(s) 63
Cac8I GCNNGC 1 cut(s) 316
CaiI CAGNNNCTG 1 cut(s) 658
Cfr13I GGNCC 1 cut(s) 352
Csp6I GTAC 3 cut(s) 328, 430, 620
CviAII CATG 1 cut(s) 325
CviJI RGCY 6 cut(s) 124, 166, 318, 353, 497, 658
CviKI_1 RGCY 6 cut(s) 124, 166, 318, 353, 497, 658
CviQI GTAC 3 cut(s) 328, 430, 620
DdeI CTNAG 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 403
EarI CTCTTC 1 cut(s) 403
Eco130I CCWWGG 1 cut(s) 609
Eco24I GRGCYC 1 cut(s) 126
Eco31I GGTCTC 1 cut(s) 19
Eco57I CTGAAG 2 cut(s) 182, 644
EcoRI GAATTC 1 cut(s) 587
EcoRII CCWGG 1 cut(s) 286
EcoT14I CCWWGG 1 cut(s) 609
EcoT38I GRGCYC 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 609
FaeI CATG 1 cut(s) 328
FaiI YATR 6 cut(s) 48, 176, 283, 326, 361, 374
FaqI GGGAC 2 cut(s) 26, 591
FatI CATG 1 cut(s) 324
Fnu4HI GCNGC 2 cut(s) 366, 518
FokI GGATG 5 cut(s) 100, 212, 245, 253, 257
FriOI GRGCYC 1 cut(s) 126
Fsp4HI GCNGC 2 cut(s) 366, 518
GluI GCNGC 2 cut(s) 366, 518
GsuI CTGGAG 2 cut(s) 164, 444
HaeIII GGCC 2 cut(s) 353, 497
HapII CCGG 1 cut(s) 405
Hin1II CATG 1 cut(s) 328
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 405
HphI GGTGA 3 cut(s) 76, 118, 326
Hpy188I TCNGA 3 cut(s) 20, 157, 382
Hpy188III TCNNGA 2 cut(s) 296, 423
HpyAV CCTTC 4 cut(s) 102, 113, 217, 408
HpyCH4III ACNGT 4 cut(s) 130, 332, 434, 605
HpyCH4IV ACGT 1 cut(s) 7
HpyCH4V TGCA 5 cut(s) 272, 314, 491, 530, 667
HpyF10VI GCNNNNNNNGC 4 cut(s) 374, 503, 655, 664
HpyF3I CTNAG 1 cut(s) 305
HpySE526I ACGT 1 cut(s) 7
Hsp92II CATG 1 cut(s) 328
Lsp1109I GCAGC 2 cut(s) 377, 504
LweI GCATC 7 cut(s) 78, 190, 289, 377, 386, 499, 658
MaeII ACGT 1 cut(s) 7
MaeIII GTNAC 3 cut(s) 3, 332, 535
MboII GAAGA 4 cut(s) 203, 260, 420, 474
MhlI GDGCHC 1 cut(s) 126
MluCI AATT 2 cut(s) 384, 587
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 135
MnlI CCTC 5 cut(s) 60, 78, 118, 127, 475
MslI CAYNNNNRTG 1 cut(s) 20
MspI CCGG 1 cut(s) 405
MspR9I CCNGG 2 cut(s) 288, 405
MvaI CCWGG 1 cut(s) 288
MwoI GCNNNNNNNGC 4 cut(s) 374, 503, 655, 664
NciI CCSGG 1 cut(s) 405
NlaIII CATG 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 332
NspI RCATGY 1 cut(s) 328
PfoI TCCNGGA 1 cut(s) 403
PkrI GCNGC 2 cut(s) 367, 519
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
Psp6I CCWGG 1 cut(s) 286
PspGI CCWGG 1 cut(s) 286
PspPI GGNCC 1 cut(s) 352
PstI CTGCAG 1 cut(s) 669
PstNI CAGNNNCTG 1 cut(s) 658
RsaI GTAC 3 cut(s) 329, 431, 621
RsaNI GTAC 3 cut(s) 328, 430, 620
RseI CAYNNNNRTG 1 cut(s) 20
SatI GCNGC 2 cut(s) 366, 518
Sau96I GGNCC 1 cut(s) 352
ScaI AGTACT 1 cut(s) 621
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 2 cut(s) 288, 405
SduI GDGCHC 1 cut(s) 126
SetI ASST 9 cut(s) 10, 31, 57, 71, 228, 292, 320, 349, 615
SfaNI GCATC 7 cut(s) 78, 190, 289, 377, 386, 499, 658
SfcI CTRYAG 1 cut(s) 665
SmiMI CAYNNNNRTG 1 cut(s) 20
SmlI CTYRAG 1 cut(s) 319
SmoI CTYRAG 1 cut(s) 319
Sse9I AATT 2 cut(s) 384, 587
SsiI CCGC 2 cut(s) 116, 545
StyD4I CCNGG 2 cut(s) 286, 403
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 4 cut(s) 130, 332, 434, 605
TaiI ACGT 1 cut(s) 10
TaqII GACCGA 1 cut(s) 551
TasI AATT 2 cut(s) 384, 587
TatI WGTACW 3 cut(s) 327, 429, 619
TseFI GTSAC 1 cut(s) 332
TseI GCWGC 2 cut(s) 365, 517
Tsp45I GTSAC 1 cut(s) 332
TspDTI ATGAA 3 cut(s) 200, 249, 261
TspGWI ACGGA 1 cut(s) 253
XapI RAATTY 2 cut(s) 384, 587
XceI RCATGY 1 cut(s) 328
ZrmI AGTACT 1 cut(s) 621
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.