pycom07g13530

Belongs to the iron ascorbate-dependent oxidoreductase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
15380037 .. 15380357
321 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 321 bp
ATGGCAGAACTATCAAAGAAAATCGTAAAGATTGCTTTGATGAGCTTGGGGGAAGGATTGGAGAAGAAACATTACGAATCCGAATTCAAAAAGTGCCATGGTTACTTGAGAGTGAACAACTGCTCAACCCCTCCAGAAAGTTTGGAAGATCAACATCAAGAAGTTGGACTTGGAATGCACACTGACATGAGCTGTGTGACGATTGTGTACCAAGACGAAATCGGAGGGCTTCAAGTGAGACCAAGGGAGGGAAAGTGGATGGACATAACTCCATGTGAGGGGACCTTGGTGGTGAACGTAGGAGACATGTTTCAAGCTTGA

Protein Analysis

107

Amino Acids

11.89

Weight (kDa)

5.29

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
2OG-FeII_Oxy PF03171 40 - 105 7.3e-15 2OG-Fe(II) oxygenase superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 83
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 248, 278
AflIII ACRYGT 1 cut(s) 306
AgsI TTSAA 3 cut(s) 88, 233, 314
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 3 cut(s) 45, 192, 317
AluI AGCT 3 cut(s) 45, 192, 317
Alw26I GTCTC 2 cut(s) 232, 297
ApoI RAATTY 1 cut(s) 83
AspS9I GGNCC 1 cut(s) 282
AsuHPI GGTGA 1 cut(s) 304
AvaII GGWCC 1 cut(s) 282
BarI GAAGNNNNNNTAC 2 cut(s) 56, 88
BccI CCATC 1 cut(s) 253
BcoDI GTCTC 2 cut(s) 232, 297
Bme18I GGWCC 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 282
BmiI GGNNCC 1 cut(s) 283
BpmI CTGGAG 1 cut(s) 117
BpuEI CTTGAG 1 cut(s) 127
BsaBI GATNNNNATC 1 cut(s) 153
BsaI GGTCTC 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 97, 242, 285
BsaXI ACNNNNNCTCC 2 cut(s) 239, 269
Bsc4I CCNNNNNNNGG 2 cut(s) 248, 278
Bse8I GATNNNNATC 1 cut(s) 153
BseDI CCNNGG 3 cut(s) 97, 242, 285
BseGI GGATG 1 cut(s) 264
BseJI GATNNNNATC 1 cut(s) 153
BseLI CCNNNNNNNGG 2 cut(s) 248, 278
BslFI GGGAC 1 cut(s) 295
BslI CCNNNNNNNGG 2 cut(s) 248, 278
BsmAI GTCTC 2 cut(s) 232, 297
BsmFI GGGAC 1 cut(s) 295
BsmI GAATGC 1 cut(s) 180
Bso31I GGTCTC 1 cut(s) 232
Bsp143I GATC 1 cut(s) 148
Bsp19I CCATGG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 232
BssECI CCNNGG 3 cut(s) 97, 242, 285
BssMI GATC 1 cut(s) 148
BssT1I CCWWGG 3 cut(s) 97, 242, 285
BstDSI CCRYGG 1 cut(s) 97
BstF5I GGATG 1 cut(s) 264
BstKTI GATC 1 cut(s) 151
BstMAI GTCTC 2 cut(s) 232, 297
BstMBI GATC 1 cut(s) 148
BstNSI RCATGY 1 cut(s) 310
BtgI CCRYGG 1 cut(s) 97
BtsCI GGATG 1 cut(s) 264
BtsIMutI CAGTG 1 cut(s) 180
Cfr13I GGNCC 1 cut(s) 282
Csp6I GTAC 1 cut(s) 208
CviAII CATG 4 cut(s) 98, 187, 273, 307
CviJI RGCY 4 cut(s) 45, 192, 229, 317
CviKI_1 RGCY 4 cut(s) 45, 192, 229, 317
CviQI GTAC 1 cut(s) 208
DpnI GATC 1 cut(s) 150
DpnII GATC 1 cut(s) 148
Eco130I CCWWGG 3 cut(s) 97, 242, 285
Eco31I GGTCTC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 282
EcoO109I RGGNCCY 1 cut(s) 282
EcoRI GAATTC 1 cut(s) 83
EcoT14I CCWWGG 3 cut(s) 97, 242, 285
ErhI CCWWGG 3 cut(s) 97, 242, 285
FaeI CATG 4 cut(s) 101, 190, 276, 310
FaiI YATR 5 cut(s) 99, 188, 266, 274, 308
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FaqI GGGAC 1 cut(s) 295
FatI CATG 4 cut(s) 97, 186, 272, 306
FokI GGATG 1 cut(s) 271
GsuI CTGGAG 1 cut(s) 117
Hin1II CATG 4 cut(s) 101, 190, 276, 310
HindIII AAGCTT 1 cut(s) 315
HinfI GANTC 1 cut(s) 77
HphI GGTGA 1 cut(s) 304
Hpy166II GTNNAC 3 cut(s) 115, 208, 295
Hpy188I TCNGA 2 cut(s) 82, 224
Hpy188III TCNNGA 2 cut(s) 134, 158
Hpy8I GTNNAC 3 cut(s) 115, 208, 295
HpyAV CCTTC 1 cut(s) 47
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 1 cut(s) 178
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 4 cut(s) 101, 190, 276, 310
Kzo9I GATC 1 cut(s) 148
LpnPI CCDG 1 cut(s) 147
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 2 cut(s) 101, 196
MalI GATC 1 cut(s) 150
MboI GATC 1 cut(s) 148
MboII GAAGA 2 cut(s) 76, 158
MluCI AATT 1 cut(s) 83
MmeI TCCRAC 1 cut(s) 145
MnlI CCTC 4 cut(s) 141, 218, 241, 271
MslI CAYNNNNRTG 1 cut(s) 185
Mva1269I GAATGC 1 cut(s) 180
NcoI CCATGG 1 cut(s) 97
NdeII GATC 1 cut(s) 148
NlaIII CATG 4 cut(s) 101, 190, 276, 310
NlaIV GGNNCC 1 cut(s) 283
NmuCI GTSAC 1 cut(s) 196
NspI RCATGY 1 cut(s) 310
PciI ACATGT 1 cut(s) 306
PctI GAATGC 1 cut(s) 180
PfeI GAWTC 1 cut(s) 77
PpuMI RGGWCCY 1 cut(s) 282
PscI ACATGT 1 cut(s) 306
Psp5II RGGWCCY 1 cut(s) 282
PspN4I GGNNCC 1 cut(s) 283
PspPI GGNCC 1 cut(s) 282
PspPPI RGGWCCY 1 cut(s) 282
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 1 cut(s) 185
Sau3AI GATC 1 cut(s) 148
Sau96I GGNCC 1 cut(s) 282
SetI ASST 5 cut(s) 47, 194, 287, 300, 319
SinI GGWCC 1 cut(s) 282
SmiMI CAYNNNNRTG 1 cut(s) 185
SmlI CTYRAG 1 cut(s) 106
SmoI CTYRAG 1 cut(s) 106
Sse9I AATT 1 cut(s) 83
StyI CCWWGG 3 cut(s) 97, 242, 285
TaiI ACGT 1 cut(s) 300
TasI AATT 1 cut(s) 83
TfiI GAWTC 1 cut(s) 77
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 196
Tsp45I GTSAC 1 cut(s) 196
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 282
XapI RAATTY 1 cut(s) 83
XceI RCATGY 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.