pycom07g14110

Plastid division protein CDP1

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
15943060 .. 15943487
428 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 282 bp
ATGGTTGGGCAGATTGACAAAGCAAAATCTATATGTGAGTGCTTGATTGCATCAGAGGGTGCTGATCTGAAACTTGAGGAAGCTTTTTGCTTGTTCTTCATGGGTCAGGCCAACTTTTTTGGTGGTGACAAGATGACTCTTTTGAGCAAGAAAAGCAAAGTAGCTCCACAGAAGTTGCCTATCATAAATTTCAATGAATCTTTTTCCCATATGAACTCTTCTCAACATCTTGTTAAACATACTCAGTCTGTTATCCTTACGCTAGCAGCATATGTAGCCTAG

Protein Analysis

94

Amino Acids

10.21

Weight (kDa)

7.74

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 187
AgsI TTSAA 1 cut(s) 193
AluBI AGCT 2 cut(s) 83, 164
AluI AGCT 2 cut(s) 83, 164
AoxI GGCC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 187
AsuHPI GGTGA 1 cut(s) 137
AsuNHI GCTAGC 1 cut(s) 262
BbvI GCAGC 1 cut(s) 278
BfaI CTAG 2 cut(s) 263, 280
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmsI GCATC 1 cut(s) 59
BmtI GCTAGC 1 cut(s) 266
BpuEI CTTGAG 1 cut(s) 95
BseMII CTCAG 1 cut(s) 257
BseXI GCAGC 1 cut(s) 278
BshFI GGCC 1 cut(s) 110
BsnI GGCC 1 cut(s) 110
Bsp143I GATC 1 cut(s) 64
BspANI GGCC 1 cut(s) 110
BspCNI CTCAG 1 cut(s) 256
BspOI GCTAGC 1 cut(s) 266
BssMI GATC 1 cut(s) 64
Bst6I CTCTTC 1 cut(s) 223
BstC8I GCNNGC 1 cut(s) 264
BstDEI CTNAG 1 cut(s) 243
BstKTI GATC 1 cut(s) 67
BstMBI GATC 1 cut(s) 64
BstMWI GCNNNNNNNGC 2 cut(s) 153, 275
BstV1I GCAGC 1 cut(s) 278
BsuRI GGCC 1 cut(s) 110
Cac8I GCNNGC 1 cut(s) 264
CspCI CAANNNNNGTGG 2 cut(s) 156, 191
CviAII CATG 1 cut(s) 100
CviJI RGCY 4 cut(s) 83, 110, 164, 278
CviKI_1 RGCY 4 cut(s) 83, 110, 164, 278
DdeI CTNAG 1 cut(s) 243
DpnI GATC 1 cut(s) 66
DpnII GATC 1 cut(s) 64
Eam1104I CTCTTC 1 cut(s) 223
EarI CTCTTC 1 cut(s) 223
FaeI CATG 1 cut(s) 103
FaiI YATR 9 cut(s) 32, 34, 101, 185, 210, 212, 240, 271, 273
FatI CATG 1 cut(s) 99
FauNDI CATATG 2 cut(s) 210, 271
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 2 cut(s) 263, 280
GluI GCNGC 1 cut(s) 267
HaeIII GGCC 1 cut(s) 110
Hin1II CATG 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 81
HinfI GANTC 2 cut(s) 136, 197
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 55, 69
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 2 cut(s) 153, 275
HpyF3I CTNAG 1 cut(s) 243
Hsp92II CATG 1 cut(s) 103
Kzo9I GATC 1 cut(s) 64
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 1 cut(s) 92
Lsp1109I GCAGC 1 cut(s) 278
LweI GCATC 1 cut(s) 59
MaeI CTAG 2 cut(s) 263, 280
MaeIII GTNAC 1 cut(s) 125
MalI GATC 1 cut(s) 66
MboI GATC 1 cut(s) 64
MboII GAAGA 2 cut(s) 88, 210
MluCI AATT 1 cut(s) 187
MlyI GAGTC 1 cut(s) 130
MnlI CCTC 2 cut(s) 49, 70
MseI TTAA 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 153, 275
NdeI CATATG 2 cut(s) 210, 271
NdeII GATC 1 cut(s) 64
NheI GCTAGC 1 cut(s) 262
NlaIII CATG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 125
PfeI GAWTC 1 cut(s) 197
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 130
PpsI GAGTC 1 cut(s) 130
SaqAI TTAA 1 cut(s) 234
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 64
SchI GAGTC 1 cut(s) 130
SetI ASST 2 cut(s) 85, 166
SfaNI GCATC 1 cut(s) 59
SgeI CNNG 9 cut(s) 55, 86, 103, 112, 119, 142, 160, 242, 275
SmlI CTYRAG 1 cut(s) 74
SmoI CTYRAG 1 cut(s) 74
Sse9I AATT 1 cut(s) 187
SspMI CTAG 2 cut(s) 263, 280
TasI AATT 1 cut(s) 187
TfiI GAWTC 1 cut(s) 197
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 3 cut(s) 88, 210, 227
XapI RAATTY 1 cut(s) 187
XspI CTAG 2 cut(s) 263, 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.