Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16100664 .. 16102710

Gene Structure 2047 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 714 bp

ATGCTAGGTTTTCACCCTAATAAAACATTTCTCTTCCCCCATTTCCTTCGTGAGCCCCTTATCCCTCCCCGTTTCCTTCTTCCCCTGCCTATTTTTCTTCAGTTCTTCTTTCTTTCTCCTTCCCCCCATTTCTTATCATTTTCTTCTCATGTTCTTCTCCTTCCAGCAGCATTCACCACACCTTTCGCATTTTTATCTTTAACCTCTTCATCCTCCTTCTCCAAGTCCTTCTCCTTCAGCCTTCCAACCCTTTTCCAAAAACCCAATCTTCTCCTCCTGAAATCCAATATTTTTCTCCCCGAAAGATCCATTTTTTCAGGTTCGATCATCCGATGTGTACAAATGAAGGCGGAATCTCACCGGTGCTCTGGTGAGATTCACGTCATCGTCGGCCCCATGTTCGCCGGCAAGGCCACCATGCTACTTCGTAAAGTTCAATCTAAGAGAGGTGACGATAGATTTGACTCCCCCTTTTATTTTGTTGCACTTTTTAGTTTTGAAGTATGCATGTTTGATAAAAAAAAAAAAAGATTCACGTCATTGTCGGCCCCATGTTCGCCGATTAGGCCACCACGCTACTTCGTAAAGTTCAGTCCGAGAGAGGCGACAACAGACAAGGTTAAGGGAAAGAACTGTGTTCTCAACCATGATCTCATCTTCGACATCAACACCAGACATAACCGTGCAATCATACAAATGAAAAAAGAGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004797 GO:0005488 GO:0005515 GO:0006139 GO:0006213 GO:0006259 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009116 GO:0009117 GO:0009120 GO:0009123 GO:0009124 GO:0009157 GO:0009162 GO:0009165 GO:0009266 GO:0009409 GO:0009628 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0018130 GO:0019136 GO:0019205 GO:0019206 GO:0019438 GO:0019637 GO:0034641 GO:0034654 GO:0042802 GO:0043170 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0046104 GO:0046125 GO:0046483 GO:0050896 GO:0055086 GO:0071704 GO:0072527 GO:0090304 GO:0090407 GO:1901135 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00240 ko00983 ko01100 map00240 map00983 map01100

Pfam Domains

Protein Families

Protein Analysis

238

Amino Acids

27.21

Weight (kDa)

10.18

Isoelectric Point (pI)

47.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	350
AclWI	GGATC	1 cut(s)	300
AcuI	CTGAAG	2 cut(s)	83, 220
AfaI	GTAC	1 cut(s)	339
AgeI	ACCGGT	1 cut(s)	360
AgsI	TTSAA	2 cut(s)	437, 500
AjiI	CACGTC	2 cut(s)	382, 537
Alw21I	GWGCWC	1 cut(s)	368
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	4 cut(s)	391, 411, 546, 566
ApeKI	GCWGC	1 cut(s)	167
ArsI	GACNNNNNNTTYG	2 cut(s)	443, 475
AsiGI	ACCGGT	1 cut(s)	360
AspS9I	GGNCC	2 cut(s)	392, 547
AsuHPI	GGTGA	5 cut(s)	5, 166, 350, 383, 461
BanII	GRGCYC	1 cut(s)	57
Bbv12I	GWGCWC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	5
BglI	GCCNNNNNGGC	2 cut(s)	410, 565
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
BmgBI	CACGTC	2 cut(s)	382, 537
BmgT120I	GGNCC	2 cut(s)	392, 547
BmiI	GGNNCC	2 cut(s)	394, 549
BsaWI	WCCGGW	1 cut(s)	360
Bse118I	RCCGGY	2 cut(s)	360, 404
BseGI	GGATG	2 cut(s)	209, 327
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	1 cut(s)	179
BshFI	GGCC	4 cut(s)	393, 413, 548, 568
BshTI	ACCGGT	1 cut(s)	360
BsiHKAI	GWGCWC	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	361, 405
BsmI	GAATGC	1 cut(s)	170
BsnI	GGCC	4 cut(s)	393, 413, 548, 568
Bsp1286I	GDGCHC	2 cut(s)	57, 368
Bsp1407I	TGTACA	1 cut(s)	337
Bsp143I	GATC	3 cut(s)	305, 324, 649
BspACI	CCGC	1 cut(s)	350
BspANI	GGCC	4 cut(s)	393, 413, 548, 568
BspLI	GGNNCC	2 cut(s)	394, 549
BspPI	GGATC	1 cut(s)	300
BsrFI	RCCGGY	2 cut(s)	360, 404
BsrGI	TGTACA	1 cut(s)	337
BssAI	RCCGGY	2 cut(s)	360, 404
BssMI	GATC	3 cut(s)	305, 324, 649
Bst4CI	ACNGT	2 cut(s)	635, 683
Bst6I	CTCTTC	2 cut(s)	38, 211
BstAUI	TGTACA	1 cut(s)	337
BstC8I	GCNNGC	1 cut(s)	406
BstDEI	CTNAG	1 cut(s)	441
BstF5I	GGATG	2 cut(s)	209, 327
BstKTI	GATC	3 cut(s)	308, 327, 652
BstMBI	GATC	3 cut(s)	305, 324, 649
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 565
BstNSI	RCATGY	1 cut(s)	511
BstV1I	GCAGC	1 cut(s)	179
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuRI	GGCC	4 cut(s)	393, 413, 548, 568
BtrI	CACGTC	2 cut(s)	382, 537
BtsCI	GGATG	2 cut(s)	209, 327
Cac8I	GCNNGC	1 cut(s)	406
Cfr10I	RCCGGY	2 cut(s)	360, 404
Cfr13I	GGNCC	2 cut(s)	392, 547
Csp6I	GTAC	1 cut(s)	338
CspAI	ACCGGT	1 cut(s)	360
CviAII	CATG	6 cut(s)	149, 397, 418, 508, 552, 647
CviJI	RGCY	6 cut(s)	55, 240, 393, 413, 548, 568
CviKI_1	RGCY	6 cut(s)	55, 240, 393, 413, 548, 568
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	1 cut(s)	441
DpnI	GATC	3 cut(s)	307, 326, 651
DpnII	GATC	3 cut(s)	305, 324, 649
Eam1104I	CTCTTC	2 cut(s)	38, 211
EarI	CTCTTC	2 cut(s)	38, 211
EciI	GGCGGA	1 cut(s)	365
Eco24I	GRGCYC	1 cut(s)	57
Eco57I	CTGAAG	2 cut(s)	83, 220
EcoT22I	ATGCAT	1 cut(s)	509
EcoT38I	GRGCYC	1 cut(s)	57
FaeI	CATG	6 cut(s)	152, 400, 421, 511, 555, 650
FaiI	YATR	9 cut(s)	150, 398, 419, 505, 509, 553, 648, 678, 692
FatI	CATG	6 cut(s)	148, 396, 417, 507, 551, 646
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	2 cut(s)	196, 314
FriOI	GRGCYC	1 cut(s)	57
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	5
GluI	GCNGC	1 cut(s)	168
HaeIII	GGCC	4 cut(s)	393, 413, 548, 568
HapII	CCGG	2 cut(s)	361, 405
Hin1II	CATG	6 cut(s)	152, 400, 421, 511, 555, 650
HinfI	GANTC	4 cut(s)	353, 376, 464, 531
HpaII	CCGG	2 cut(s)	361, 405
HphI	GGTGA	5 cut(s)	5, 166, 350, 383, 461
Hpy166II	GTNNAC	1 cut(s)	338
Hpy188I	TCNGA	2 cut(s)	332, 597
Hpy188III	TCNNGA	2 cut(s)	50, 277
Hpy8I	GTNNAC	1 cut(s)	338
Hpy99I	CGWCG	1 cut(s)	392
HpyAV	CCTTC	9 cut(s)	56, 86, 129, 170, 226, 238, 244, 251, 340
HpyCH4III	ACNGT	2 cut(s)	635, 683
HpyCH4IV	ACGT	2 cut(s)	381, 536
HpyCH4V	TGCA	3 cut(s)	485, 507, 686
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 565
HpyF3I	CTNAG	1 cut(s)	441
HpySE526I	ACGT	2 cut(s)	381, 536
Hsp92II	CATG	6 cut(s)	152, 400, 421, 511, 555, 650
KroI	GCCGGC	1 cut(s)	404
KroNI	GCCGGC	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	305, 324, 649
LpnPI	CCDG	8 cut(s)	98, 177, 290, 303, 354, 374, 418, 685
Lsp1109I	GCAGC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	5
MaeII	ACGT	2 cut(s)	381, 536
MaeIII	GTNAC	1 cut(s)	449
MalI	GATC	3 cut(s)	307, 326, 651
MboI	GATC	3 cut(s)	305, 324, 649
MboII	GAAGA	9 cut(s)	25, 71, 89, 97, 135, 146, 198, 260, 649
MflI	RGATCY	1 cut(s)	305
MhlI	GDGCHC	2 cut(s)	57, 368
MluCI	AATT	1 cut(s)	709
MlyI	GAGTC	1 cut(s)	458
MmeI	TCCRAC	1 cut(s)	269
MnlI	CCTC	6 cut(s)	75, 214, 223, 284, 440, 595
Mph1103I	ATGCAT	1 cut(s)	509
MroNI	GCCGGC	1 cut(s)	404
MseI	TTAA	2 cut(s)	200, 621
MslI	CAYNNNNRTG	2 cut(s)	681, 695
MspI	CCGG	2 cut(s)	361, 405
Mva1269I	GAATGC	1 cut(s)	170
MwoI	GCNNNNNNNGC	2 cut(s)	410, 565
NaeI	GCCGGC	1 cut(s)	406
NdeII	GATC	3 cut(s)	305, 324, 649
NgoMIV	GCCGGC	1 cut(s)	404
NlaIII	CATG	6 cut(s)	152, 400, 421, 511, 555, 650
NlaIV	GGNNCC	2 cut(s)	394, 549
NmuCI	GTSAC	1 cut(s)	449
NsiI	ATGCAT	1 cut(s)	509
NspI	RCATGY	1 cut(s)	511
PctI	GAATGC	1 cut(s)	170
PdiI	GCCGGC	1 cut(s)	406
PfeI	GAWTC	3 cut(s)	353, 376, 531
PinAI	ACCGGT	1 cut(s)	360
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	1 cut(s)	458
PpsI	GAGTC	1 cut(s)	458
PspN4I	GGNNCC	2 cut(s)	394, 549
PspPI	GGNCC	2 cut(s)	392, 547
PsuI	RGATCY	1 cut(s)	305
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
RseI	CAYNNNNRTG	2 cut(s)	681, 695
SaqAI	TTAA	2 cut(s)	200, 621
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	3 cut(s)	305, 324, 649
Sau96I	GGNCC	2 cut(s)	392, 547
SchI	GAGTC	1 cut(s)	458
SduI	GDGCHC	2 cut(s)	57, 368
SetI	ASST	8 cut(s)	10, 184, 206, 322, 384, 451, 539, 621
SgrAI	CRCCGGYG	1 cut(s)	360
SmiMI	CAYNNNNRTG	2 cut(s)	681, 695
Sse9I	AATT	1 cut(s)	709
SsiI	CCGC	1 cut(s)	350
SspI	AATATT	1 cut(s)	289
SspMI	CTAG	1 cut(s)	5
TaaI	ACNGT	2 cut(s)	635, 683
TaiI	ACGT	2 cut(s)	384, 539
TaqI	TCGA	2 cut(s)	323, 660
TasI	AATT	1 cut(s)	709
TatI	WGTACW	1 cut(s)	337
TfiI	GAWTC	3 cut(s)	353, 376, 531
Tru1I	TTAA	2 cut(s)	200, 621
Tru9I	TTAA	2 cut(s)	200, 621
TseFI	GTSAC	1 cut(s)	449
TseI	GCWGC	1 cut(s)	167
Tsp45I	GTSAC	1 cut(s)	449
TspDTI	ATGAA	3 cut(s)	198, 359, 713
XceI	RCATGY	1 cut(s)	511
XspI	CTAG	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.