Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16356633 .. 16357325

Gene Structure 693 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGGCTGAAAGGCCTGAATATTGTCTTTGTACATATGGATTAACTACTAACATGGTTGTGTGCAGAGCTCGATATGGCGAAGTTTCTCCTAAAGTAGATGTCTTTGCGTTCGGAGTTGTCATTTTTGAGTTGATATCGGCCAAGGAAGCTGTTTTCAGAGCGGATGGCTCTAGTTCGGAATCAAAAGGCCTTGTTGGTTTGACCTCCCCAAAATTGGTCGACCCTAACCTTGGAGACAACTCTCCGCTTGATTCAGTGCGCAAGGTGAAAAAATTTCCCAGACCAAAACACATTATGATTTCAAAGCATGCACGCACGCACGAAAACAAAGATCTGCGTCCAAGTATGCGATCAATCGTGGTGGTGTTGATGACACTCCCATCCTCAACCGAGGATTGGGATGTCGGATCCTTCTACGAAAACCAAGCTTTTGTCAATCTGATGGTAGGAAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

152

Amino Acids

16.81

Weight (kDa)

8.81

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	260
AccBSI	CCGCTC	1 cut(s)	161
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	2 cut(s)	161, 245
AclWI	GGATC	2 cut(s)	402, 415
AcoI	YGGCCR	1 cut(s)	138
AcsI	RAATTY	1 cut(s)	272
AfaI	GTAC	1 cut(s)	31
AfiI	CCNNNNNNNGG	3 cut(s)	214, 230, 396
AgsI	TTSAA	1 cut(s)	303
AluBI	AGCT	3 cut(s)	68, 149, 428
AluI	AGCT	3 cut(s)	68, 149, 428
Alw21I	GWGCWC	1 cut(s)	70
Alw26I	GTCTC	1 cut(s)	228
AlwI	GGATC	2 cut(s)	402, 415
AoxI	GGCC	3 cut(s)	11, 138, 187
ApoI	RAATTY	1 cut(s)	272
AspLEI	GCGC	1 cut(s)	261
AsuHPI	GGTGA	1 cut(s)	277
BamHI	GGATCC	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	70
BccI	CCATC	3 cut(s)	158, 388, 436
BcoDI	GTCTC	1 cut(s)	228
BfaI	CTAG	1 cut(s)	171
BglII	AGATCT	1 cut(s)	331
BmiI	GGNNCC	1 cut(s)	409
BsaJI	CCNNGG	3 cut(s)	141, 229, 390
Bsc4I	CCNNNNNNNGG	3 cut(s)	214, 230, 396
BseDI	CCNNGG	3 cut(s)	141, 229, 390
BseGI	GGATG	3 cut(s)	169, 380, 406
BseLI	CCNNNNNNNGG	3 cut(s)	214, 230, 396
BsgI	GTGCAG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	13, 140, 189
BsiHKAI	GWGCWC	1 cut(s)	70
BslI	CCNNNNNNNGG	3 cut(s)	214, 230, 396
BsmAI	GTCTC	1 cut(s)	228
BsnI	GGCC	3 cut(s)	13, 140, 189
Bsp1286I	GDGCHC	1 cut(s)	70
Bsp1407I	TGTACA	1 cut(s)	29
Bsp143I	GATC	3 cut(s)	331, 350, 407
BspACI	CCGC	2 cut(s)	161, 245
BspANI	GGCC	3 cut(s)	13, 140, 189
BspLI	GGNNCC	1 cut(s)	409
BspPI	GGATC	2 cut(s)	402, 415
BsrBI	CCGCTC	1 cut(s)	161
BsrGI	TGTACA	1 cut(s)	29
BssECI	CCNNGG	3 cut(s)	141, 229, 390
BssMI	GATC	3 cut(s)	331, 350, 407
BssT1I	CCWWGG	2 cut(s)	141, 229
BstAUI	TGTACA	1 cut(s)	29
BstC8I	GCNNGC	3 cut(s)	309, 313, 317
BstF5I	GGATG	3 cut(s)	169, 380, 406
BstHHI	GCGC	1 cut(s)	261
BstKTI	GATC	3 cut(s)	334, 353, 410
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	3 cut(s)	331, 350, 407
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNSI	RCATGY	1 cut(s)	311
BstX2I	RGATCY	2 cut(s)	331, 407
BstYI	RGATCY	2 cut(s)	331, 407
BsuRI	GGCC	3 cut(s)	13, 140, 189
BtsCI	GGATG	3 cut(s)	169, 380, 406
BtsIMutI	CAGTG	1 cut(s)	261
Cac8I	GCNNGC	3 cut(s)	309, 313, 317
CfoI	GCGC	1 cut(s)	261
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	1 cut(s)	30
CspCI	CAANNNNNGTGG	2 cut(s)	342, 377
CviAII	CATG	2 cut(s)	52, 308
CviJI	RGCY	8 cut(s)	5, 13, 68, 140, 149, 168, 189, 428
CviKI_1	RGCY	8 cut(s)	5, 13, 68, 140, 149, 168, 189, 428
CviQI	GTAC	1 cut(s)	30
DpnI	GATC	3 cut(s)	333, 352, 409
DpnII	GATC	3 cut(s)	331, 350, 407
EaeI	YGGCCR	1 cut(s)	138
Ecl136II	GAGCTC	1 cut(s)	68
Eco130I	CCWWGG	2 cut(s)	141, 229
Eco147I	AGGCCT	2 cut(s)	13, 189
Eco24I	GRGCYC	1 cut(s)	70
Eco32I	GATATC	1 cut(s)	135
Eco53kI	GAGCTC	1 cut(s)	68
EcoICRI	GAGCTC	1 cut(s)	68
EcoRV	GATATC	1 cut(s)	135
EcoT14I	CCWWGG	2 cut(s)	141, 229
EcoT38I	GRGCYC	1 cut(s)	70
ErhI	CCWWGG	2 cut(s)	141, 229
FaeI	CATG	2 cut(s)	55, 311
FaiI	YATR	7 cut(s)	34, 36, 53, 75, 296, 309, 347
FatI	CATG	2 cut(s)	51, 307
FauNDI	CATATG	1 cut(s)	34
FblI	GTMKAC	1 cut(s)	219
FokI	GGATG	3 cut(s)	176, 367, 413
FriOI	GRGCYC	1 cut(s)	70
FspBI	CTAG	1 cut(s)	171
FspI	TGCGCA	1 cut(s)	260
GlaI	GCGC	1 cut(s)	260
HaeIII	GGCC	3 cut(s)	13, 140, 189
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	2 cut(s)	55, 311
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HindIII	AAGCTT	1 cut(s)	426
HinfI	GANTC	2 cut(s)	179, 251
HphI	GGTGA	1 cut(s)	277
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	5 cut(s)	113, 158, 178, 407, 441
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	2 cut(s)	421, 444
HpyCH4V	TGCA	2 cut(s)	63, 311
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
Hsp92II	CATG	2 cut(s)	55, 311
HspAI	GCGC	1 cut(s)	259
Kzo9I	GATC	3 cut(s)	331, 350, 407
LpnPI	CCDG	2 cut(s)	27, 292
MaeI	CTAG	1 cut(s)	171
MalI	GATC	3 cut(s)	333, 352, 409
MbiI	CCGCTC	1 cut(s)	161
MboI	GATC	3 cut(s)	331, 350, 407
MflI	RGATCY	2 cut(s)	331, 407
MhlI	GDGCHC	1 cut(s)	70
MluCI	AATT	2 cut(s)	212, 272
MmeI	TCCRAC	1 cut(s)	385
MnlI	CCTC	3 cut(s)	214, 385, 394
MseI	TTAA	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	146
NdeI	CATATG	1 cut(s)	34
NdeII	GATC	3 cut(s)	331, 350, 407
NlaIII	CATG	2 cut(s)	55, 311
NlaIV	GGNNCC	1 cut(s)	409
NsbI	TGCGCA	1 cut(s)	260
NspI	RCATGY	1 cut(s)	311
PaeI	GCATGC	1 cut(s)	311
PceI	AGGCCT	2 cut(s)	13, 189
PfeI	GAWTC	2 cut(s)	179, 251
Psp124BI	GAGCTC	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	409
PsuI	RGATCY	2 cut(s)	331, 407
RsaI	GTAC	1 cut(s)	31
RsaNI	GTAC	1 cut(s)	30
RseI	CAYNNNNRTG	1 cut(s)	56
SacI	GAGCTC	1 cut(s)	70
SalI	GTCGAC	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	41
Sau3AI	GATC	3 cut(s)	331, 350, 407
SduI	GDGCHC	1 cut(s)	70
SetI	ASST	7 cut(s)	70, 151, 206, 231, 267, 430, 455
SmiMI	CAYNNNNRTG	1 cut(s)	56
SphI	GCATGC	1 cut(s)	311
Sse9I	AATT	2 cut(s)	212, 272
SseBI	AGGCCT	2 cut(s)	13, 189
SsiI	CCGC	2 cut(s)	161, 245
SspI	AATATT	1 cut(s)	20
SspMI	CTAG	1 cut(s)	171
SstI	GAGCTC	1 cut(s)	70
StuI	AGGCCT	2 cut(s)	13, 189
StyI	CCWWGG	2 cut(s)	141, 229
TaqI	TCGA	2 cut(s)	70, 219
TasI	AATT	2 cut(s)	212, 272
TatI	WGTACW	1 cut(s)	29
TfiI	GAWTC	2 cut(s)	179, 251
Tru1I	TTAA	1 cut(s)	41
Tru9I	TTAA	1 cut(s)	41
TscAI	CASTG	1 cut(s)	261
TspRI	CASTG	1 cut(s)	261
XapI	RAATTY	1 cut(s)	272
XceI	RCATGY	1 cut(s)	311
XmiI	GTMKAC	1 cut(s)	219
XspI	CTAG	1 cut(s)	171

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.