Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16362758 .. 16363750

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGTTTGACATGATTTCATTGATTTTTCTTCTGGGTCTAGCCCTTGTGATTACCCCCGATAAACCTGGAGAGTCAAATGCTGCTGGTCGAGGCCTAACAGGCATTTCTGTGGACAAATCAGTGGAGTTCTCATACGAAGAACTTGCGAGGGTTACTGATAACTTCAGCCTAGCTAATAAAATTGAACAAGGAGGTTTCGGGGCCGTTTACCATGCAGAGTTGAGAGGCGAGGGAGAAGGAGTGCAGATTGCCCTAGATTCAGGAAGAGGTCTCGAATACATTCATGAGCATACTGTTCCTGTTTATATCCACCGCGATATCAAATCAGCCAATATATTGATAGACAAGAATTTCCATGCCAAGGTTACTTTAGCGCCTCTATTTCCAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005775 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009608 GO:0009609 GO:0009617 GO:0009877 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0031974 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046777 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0070013 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

131

Amino Acids

14.17

Weight (kDa)

5.25

Isoelectric Point (pI)

20.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	77 - 122	7.5e-07	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	315
AciI	CCGC	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	349
AcuI	CTGAAG	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	361
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	64
AluBI	AGCT	1 cut(s)	173
AluI	AGCT	1 cut(s)	173
Alw26I	GTCTC	1 cut(s)	275
AoxI	GGCC	2 cut(s)	91, 201
ApeKI	GCWGC	1 cut(s)	80
ApoI	RAATTY	1 cut(s)	349
Asp700I	GAANNNNTTC	1 cut(s)	279
AspLEI	GCGC	1 cut(s)	376
AspS9I	GGNCC	1 cut(s)	201
BbvI	GCAGC	1 cut(s)	67
BceAI	ACGGC	1 cut(s)	188
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	66
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	3 cut(s)	38, 170, 254
BfoI	RGCGCY	1 cut(s)	377
BglI	GCCNNNNNGGC	1 cut(s)	99
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	66
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	66
BpmI	CTGGAG	1 cut(s)	87
BsaI	GGTCTC	1 cut(s)	275
BsaJI	CCNNGG	1 cut(s)	360
BsaXI	ACNNNNNCTCC	2 cut(s)	225, 255
Bsc4I	CCNNNNNNNGG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	66
BseDI	CCNNGG	1 cut(s)	360
BseLI	CCNNNNNNNGG	1 cut(s)	361
BseXI	GCAGC	1 cut(s)	67
BsgI	GTGCAG	1 cut(s)	263
Bsh1236I	CGCG	1 cut(s)	315
BshFI	GGCC	2 cut(s)	93, 203
BslI	CCNNNNNNNGG	1 cut(s)	361
BsmAI	GTCTC	1 cut(s)	275
BsnI	GGCC	2 cut(s)	93, 203
Bso31I	GGTCTC	1 cut(s)	275
BspACI	CCGC	1 cut(s)	313
BspANI	GGCC	2 cut(s)	93, 203
BspFNI	CGCG	1 cut(s)	315
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	202
BspTNI	GGTCTC	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	1 cut(s)	66
Bst4CI	ACNGT	1 cut(s)	295
Bst6I	CTCTTC	1 cut(s)	259
BstFNI	CGCG	1 cut(s)	315
BstH2I	RGCGCY	1 cut(s)	377
BstHHI	GCGC	1 cut(s)	376
BstMAI	GTCTC	1 cut(s)	275
BstMWI	GCNNNNNNNGC	1 cut(s)	99
BstNI	CCWGG	1 cut(s)	66
BstSCI	CCNGG	1 cut(s)	64
BstUI	CGCG	1 cut(s)	315
BstV1I	GCAGC	1 cut(s)	67
BsuRI	GGCC	2 cut(s)	93, 203
BtsIMutI	CAGTG	1 cut(s)	126
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	376
Cfr13I	GGNCC	1 cut(s)	201
CviAII	CATG	4 cut(s)	10, 212, 284, 356
CviJI	RGCY	6 cut(s)	41, 93, 168, 173, 203, 329
CviKI_1	RGCY	6 cut(s)	41, 93, 168, 173, 203, 329
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
Eco130I	CCWWGG	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	93
Eco31I	GGTCTC	1 cut(s)	275
Eco32I	GATATC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	148
EcoRII	CCWGG	1 cut(s)	64
EcoRV	GATATC	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	360
FaeI	CATG	4 cut(s)	13, 215, 287, 359
FaiI	YATR	9 cut(s)	11, 133, 213, 285, 291, 306, 335, 357, 391
FatI	CATG	4 cut(s)	9, 211, 283, 355
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
FspBI	CTAG	3 cut(s)	38, 170, 254
GlaI	GCGC	1 cut(s)	375
GluI	GCNGC	1 cut(s)	81
GsuI	CTGGAG	1 cut(s)	87
HaeII	RGCGCY	1 cut(s)	377
HaeIII	GGCC	2 cut(s)	93, 203
HhaI	GCGC	1 cut(s)	376
Hin1II	CATG	4 cut(s)	13, 215, 287, 359
Hin6I	GCGC	1 cut(s)	374
HinP1I	GCGC	1 cut(s)	374
HinfI	GANTC	2 cut(s)	71, 257
Hpy166II	GTNNAC	2 cut(s)	112, 208
Hpy188III	TCNNGA	3 cut(s)	261, 272, 284
Hpy8I	GTNNAC	2 cut(s)	112, 208
HpyAV	CCTTC	1 cut(s)	230
HpyCH4III	ACNGT	1 cut(s)	295
HpyCH4V	TGCA	2 cut(s)	215, 244
HpyF10VI	GCNNNNNNNGC	1 cut(s)	99
Hsp92II	CATG	4 cut(s)	13, 215, 287, 359
HspAI	GCGC	1 cut(s)	374
LpnPI	CCDG	7 cut(s)	17, 51, 69, 78, 84, 246, 312
Lsp1109I	GCAGC	1 cut(s)	67
MaeI	CTAG	3 cut(s)	38, 170, 254
MaeIII	GTNAC	2 cut(s)	151, 364
MboII	GAAGA	3 cut(s)	20, 149, 276
MluCI	AATT	2 cut(s)	180, 349
MlyI	GAGTC	1 cut(s)	80
MnlI	CCTC	7 cut(s)	83, 141, 185, 218, 223, 260, 387
MroXI	GAANNNNTTC	1 cut(s)	279
MslI	CAYNNNNRTG	1 cut(s)	107
MspR9I	CCNGG	1 cut(s)	66
MvaI	CCWGG	1 cut(s)	66
MvnI	CGCG	1 cut(s)	315
MwoI	GCNNNNNNNGC	1 cut(s)	99
NlaIII	CATG	4 cut(s)	13, 215, 287, 359
NlaIV	GGNNCC	1 cut(s)	202
PagI	TCATGA	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	1 cut(s)	257
PkrI	GCNGC	1 cut(s)	82
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	64
PspGI	CCWGG	1 cut(s)	64
PspN4I	GGNNCC	1 cut(s)	202
PspPI	GGNCC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	107
SatI	GCNGC	1 cut(s)	81
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	66
SetI	ASST	5 cut(s)	67, 175, 196, 271, 366
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	180, 349
SseBI	AGGCCT	1 cut(s)	93
SsiI	CCGC	1 cut(s)	313
SspMI	CTAG	3 cut(s)	38, 170, 254
StuI	AGGCCT	1 cut(s)	93
StyD4I	CCNGG	1 cut(s)	64
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	1 cut(s)	295
TaqI	TCGA	2 cut(s)	88, 273
TasI	AATT	2 cut(s)	180, 349
TfiI	GAWTC	1 cut(s)	257
TscAI	CASTG	1 cut(s)	126
TseI	GCWGC	1 cut(s)	80
TspDTI	ATGAA	2 cut(s)	6, 272
TspRI	CASTG	1 cut(s)	126
XapI	RAATTY	1 cut(s)	349
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	3 cut(s)	38, 170, 254

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.