pycom07g14420

F-box LRR-repeat protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Reverse (-)
16380545 .. 16380835
291 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ATGGATCTAATGAAATTGAATTTGCAACATATATTCTCGAGCATTTCTCAAAATTTGAAGAAAATGGTCATTGTTCATCATGATGAAAATACTACATCAAAAGTTGCTGAGATGGTGAGTAGGAGCAAGATGATTTCCGCTGCTTCAGTTCTCATTCGGCAGAACCTAGACCACATCTACACTATCTCTTATCATGGTCTGGGGGACTCACATAGCGAATCTGATATCTTATCTGATATCTTAGATAGTGATTCGGAGATCTCAGATAGAGATTCAAAGTTATATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

97

Amino Acids

10.9

Weight (kDa)

5.54

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 138
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 2 cut(s) 19, 52
AcuI CTGAAG 1 cut(s) 129
AgsI TTSAA 3 cut(s) 19, 58, 276
AlwI GGATC 1 cut(s) 12
Ama87I CYCGRG 1 cut(s) 37
ApeKI GCWGC 1 cut(s) 140
ApoI RAATTY 2 cut(s) 19, 52
AsuHPI GGTGA 1 cut(s) 127
AvaI CYCGRG 1 cut(s) 37
BbvI GCAGC 1 cut(s) 127
BccI CCATC 1 cut(s) 106
BfaI CTAG 1 cut(s) 167
BglII AGATCT 1 cut(s) 258
BisI GCNGC 1 cut(s) 141
BlsI GCNGC 1 cut(s) 142
BmeT110I CYCGRG 1 cut(s) 37
BplI GAGNNNNNCTC 2 cut(s) 31, 63
BseMII CTCAG 2 cut(s) 99, 276
BseXI GCAGC 1 cut(s) 127
BsiHKCI CYCGRG 1 cut(s) 37
BslFI GGGAC 1 cut(s) 218
BsmFI GGGAC 1 cut(s) 218
BsoBI CYCGRG 1 cut(s) 37
Bsp143I GATC 2 cut(s) 4, 258
BspACI CCGC 1 cut(s) 138
BspCNI CTCAG 2 cut(s) 100, 275
BspHI TCATGA 1 cut(s) 79
BspPI GGATC 1 cut(s) 12
BssMI GATC 2 cut(s) 4, 258
BstDEI CTNAG 3 cut(s) 108, 241, 262
BstKTI GATC 2 cut(s) 7, 261
BstMBI GATC 2 cut(s) 4, 258
BstV1I GCAGC 1 cut(s) 127
BstX2I RGATCY 2 cut(s) 4, 258
BstYI RGATCY 2 cut(s) 4, 258
CciI TCATGA 1 cut(s) 79
CviAII CATG 2 cut(s) 80, 194
DdeI CTNAG 3 cut(s) 108, 241, 262
DpnI GATC 2 cut(s) 6, 260
DpnII GATC 2 cut(s) 4, 258
Eco32I GATATC 2 cut(s) 226, 238
Eco57I CTGAAG 1 cut(s) 129
Eco88I CYCGRG 1 cut(s) 37
EcoRV GATATC 2 cut(s) 226, 238
FaeI CATG 2 cut(s) 83, 197
FaiI YATR 6 cut(s) 30, 32, 81, 195, 213, 283
FaqI GGGAC 1 cut(s) 218
FatI CATG 2 cut(s) 79, 193
Fnu4HI GCNGC 1 cut(s) 141
Fsp4HI GCNGC 1 cut(s) 141
FspBI CTAG 1 cut(s) 167
GluI GCNGC 1 cut(s) 141
Hin1II CATG 2 cut(s) 83, 197
HinfI GANTC 4 cut(s) 206, 218, 251, 272
HphI GGTGA 1 cut(s) 127
Hpy188I TCNGA 4 cut(s) 223, 235, 256, 265
Hpy188III TCNNGA 2 cut(s) 37, 80
HpyCH4V TGCA 1 cut(s) 25
HpyF3I CTNAG 3 cut(s) 108, 241, 262
Hsp92II CATG 2 cut(s) 83, 197
Kzo9I GATC 2 cut(s) 4, 258
LmnI GCTCC 1 cut(s) 123
LpnPI CCDG 1 cut(s) 185
Lsp1109I GCAGC 1 cut(s) 127
MaeI CTAG 1 cut(s) 167
MalI GATC 2 cut(s) 6, 260
MboI GATC 2 cut(s) 4, 258
MboII GAAGA 1 cut(s) 70
MflI RGATCY 2 cut(s) 4, 258
MluCI AATT 3 cut(s) 14, 19, 52
MlyI GAGTC 1 cut(s) 200
MslI CAYNNNNRTG 1 cut(s) 81
MspA1I CMGCKG 1 cut(s) 140
NdeII GATC 2 cut(s) 4, 258
NlaIII CATG 2 cut(s) 83, 197
PaeR7I CTCGAG 1 cut(s) 37
PagI TCATGA 1 cut(s) 79
PfeI GAWTC 3 cut(s) 218, 251, 272
PkrI GCNGC 1 cut(s) 142
PleI GAGTC 1 cut(s) 200
PpsI GAGTC 1 cut(s) 200
PsuI RGATCY 2 cut(s) 4, 258
RseI CAYNNNNRTG 1 cut(s) 81
SatI GCNGC 1 cut(s) 141
Sau3AI GATC 2 cut(s) 4, 258
SchI GAGTC 1 cut(s) 200
SetI ASST 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 37
SgeI CNNG 7 cut(s) 49, 51, 92, 139, 179, 206, 212
SlaI CTCGAG 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
Sse9I AATT 3 cut(s) 14, 19, 52
SsiI CCGC 1 cut(s) 138
SspMI CTAG 1 cut(s) 167
TaqI TCGA 1 cut(s) 38
TasI AATT 3 cut(s) 14, 19, 52
TfiI GAWTC 3 cut(s) 218, 251, 272
TseI GCWGC 1 cut(s) 140
TspDTI ATGAA 3 cut(s) 26, 65, 99
XapI RAATTY 2 cut(s) 19, 52
XhoI CTCGAG 1 cut(s) 37
XspI CTAG 1 cut(s) 167
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.