Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Forward (+)

16393870 .. 16394490

Gene Structure 621 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGTAAGAAGCAACAAGTCATGGAGATCCCTCCACGTTGTGTCCTCCTAGTCAATATCTGTTCTACAGGCTGTATCAAGCAGATAAACACATTATTTGAGAAAATCGACCGCAAGCATGCTACCCGTACCACCATTGATCCACAACTAGATAAAGGAAACGCAATAGTGATCGTGACGGGCAACATCGATACGGCCATACTCTTCAAGAAGCTTAAAACGATTAACAAAATTCCAAAGCTTATAGAAGCAGTTCACGAGGACAAAGGTTGGAGTTCAAACTCTACCGACGTCAAACTTCCTAATCCCAGTAACAACAACAATGATAACAAAGACGTAGCGCCTGTGATTGAGAAAAAGCCGAAGAAGAATGAAGGCAGTGAAAAAAAGGAAGAGAAGAATAAAGGCAAAGAAATTGAAGAGAGAAAAAACAAGGGCCAAGAGGAGCAACGGGCACCTGTGGGCACCATGCATAATCATCTGCCGGGTCGGATGGGTGGTGAGACGACATATGGTTCAGAAGAGGCAAAGATGCATGGTAGATTTGGCTACCCTCCTCCCCGACAACACTACAGTTCTATCTTTGACGAAGAGAACCCTAATGGTTGCAGCATGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000278 GO:0000281 GO:0000902 GO:0000904 GO:0000910 GO:0000911 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005737 GO:0005739 GO:0005856 GO:0005874 GO:0005886 GO:0005938 GO:0007049 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0009653 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0012505 GO:0015630 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022402 GO:0022622 GO:0030154 GO:0030312 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0032506 GO:0032989 GO:0040007 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048768 GO:0048827 GO:0048856 GO:0048869 GO:0050896 GO:0051179 GO:0051301 GO:0051641 GO:0051704 GO:0051707 GO:0060560 GO:0061640 GO:0071695 GO:0071840 GO:0071944 GO:0080147 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1902410 GO:1903047 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko05165 map05165

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

207

Amino Acids

23.16

Weight (kDa)

9.05

Isoelectric Point (pI)

55.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	294
AccB1I	GGYRCC	2 cut(s)	454, 464
AciI	CCGC	1 cut(s)	112
AclWI	GGATC	2 cut(s)	22, 134
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	231
AcyI	GRCGYC	1 cut(s)	291
AdeI	CACNNNGTG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	130
AgsI	TTSAA	3 cut(s)	208, 279, 419
AluBI	AGCT	2 cut(s)	214, 241
AluI	AGCT	2 cut(s)	214, 241
Alw26I	GTCTC	1 cut(s)	497
AlwI	GGATC	2 cut(s)	22, 134
AoxI	GGCC	2 cut(s)	195, 436
ApeKI	GCWGC	1 cut(s)	609
ApoI	RAATTY	1 cut(s)	231
Asp700I	GAANNNNTTC	1 cut(s)	252
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	486
AsuHPI	GGTGA	1 cut(s)	512
BaeGI	GKGCMC	2 cut(s)	457, 467
BanI	GGYRCC	2 cut(s)	454, 464
BauI	CACGAG	1 cut(s)	257
BccI	CCATC	1 cut(s)	487
BceAI	ACGGC	1 cut(s)	210
BcnI	CCSGG	1 cut(s)	486
BcoDI	GTCTC	1 cut(s)	497
BfaI	CTAG	2 cut(s)	50, 149
BfmI	CTRYAG	2 cut(s)	66, 571
BfoI	RGCGCY	1 cut(s)	344
BisI	GCNGC	1 cut(s)	610
BlsI	GCNGC	1 cut(s)	611
Bme1390I	CCNGG	1 cut(s)	486
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	2 cut(s)	456, 466
BmrFI	CCNGG	1 cut(s)	486
BmrI	ACTGGG	1 cut(s)	303
BmsI	GCATC	1 cut(s)	522
BmuI	ACTGGG	1 cut(s)	303
BpuMI	CCSGG	1 cut(s)	486
Bsa29I	ATCGAT	1 cut(s)	189
BsaHI	GRCGYC	1 cut(s)	291
Bse1I	ACTGG	1 cut(s)	309
BseCI	ATCGAT	1 cut(s)	189
BseGI	GGATG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	309
BseRI	GAGGAG	2 cut(s)	458, 546
BseSI	GKGCMC	2 cut(s)	457, 467
Bsh1285I	CGRYCG	1 cut(s)	112
BshFI	GGCC	2 cut(s)	197, 438
BshNI	GGYRCC	2 cut(s)	454, 464
BshVI	ATCGAT	1 cut(s)	189
BsiEI	CGRYCG	1 cut(s)	112
BsiSI	CCGG	1 cut(s)	485
BsmAI	GTCTC	1 cut(s)	497
BsmBI	CGTCTC	1 cut(s)	497
BsnI	GGCC	2 cut(s)	197, 438
Bsp1286I	GDGCHC	2 cut(s)	457, 467
Bsp143I	GATC	3 cut(s)	27, 139, 171
BspACI	CCGC	1 cut(s)	112
BspANI	GGCC	2 cut(s)	197, 438
BspDI	ATCGAT	1 cut(s)	189
BspLI	GGNNCC	2 cut(s)	456, 466
BspPI	GGATC	2 cut(s)	22, 134
BspT107I	GGYRCC	2 cut(s)	454, 464
BsrI	ACTGG	1 cut(s)	309
BssMI	GATC	3 cut(s)	27, 139, 171
BssNI	GRCGYC	1 cut(s)	291
BssSI	CACGAG	1 cut(s)	257
Bst2BI	CACGAG	1 cut(s)	257
Bst4CI	ACNGT	1 cut(s)	575
Bst6I	CTCTTC	5 cut(s)	209, 387, 414, 516, 585
BstACI	GRCGYC	1 cut(s)	291
BstC8I	GCNNGC	2 cut(s)	116, 120
BstF5I	GGATG	1 cut(s)	498
BstH2I	RGCGCY	1 cut(s)	344
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	3 cut(s)	30, 142, 174
BstMAI	GTCTC	1 cut(s)	497
BstMBI	GATC	3 cut(s)	27, 139, 171
BstMCI	CGRYCG	1 cut(s)	112
BstNSI	RCATGY	1 cut(s)	122
BstSCI	CCNGG	1 cut(s)	484
BstSFI	CTRYAG	2 cut(s)	66, 571
BstSLI	GKGCMC	2 cut(s)	457, 467
BstX2I	RGATCY	1 cut(s)	27
BstYI	RGATCY	1 cut(s)	27
Bsu15I	ATCGAT	1 cut(s)	189
BsuRI	GGCC	2 cut(s)	197, 438
BsuTUI	ATCGAT	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	498
BtsI	GCAGTG	1 cut(s)	385
BtsIMutI	CAGTG	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	116, 120
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	436
ClaI	ATCGAT	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	129
CviAII	CATG	5 cut(s)	22, 119, 469, 536, 613
CviJI	RGCY	7 cut(s)	72, 197, 214, 241, 361, 438, 549
CviKI_1	RGCY	7 cut(s)	72, 197, 214, 241, 361, 438, 549
CviQI	GTAC	1 cut(s)	129
DpnI	GATC	3 cut(s)	29, 141, 173
DpnII	GATC	3 cut(s)	27, 139, 171
DraIII	CACNNNGTG	1 cut(s)	41
EaeI	YGGCCR	1 cut(s)	195
Eam1104I	CTCTTC	5 cut(s)	209, 387, 414, 516, 585
EarI	CTCTTC	5 cut(s)	209, 387, 414, 516, 585
EcoT22I	ATGCAT	2 cut(s)	474, 537
Esp3I	CGTCTC	1 cut(s)	497
FaeI	CATG	5 cut(s)	25, 122, 472, 539, 616
FatI	CATG	5 cut(s)	21, 118, 468, 535, 612
FauNDI	CATATG	1 cut(s)	511
Fnu4HI	GCNGC	1 cut(s)	610
FokI	GGATG	1 cut(s)	505
Fsp4HI	GCNGC	1 cut(s)	610
FspBI	CTAG	2 cut(s)	50, 149
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	610
HaeII	RGCGCY	1 cut(s)	344
HaeIII	GGCC	2 cut(s)	197, 438
HapII	CCGG	1 cut(s)	485
HhaI	GCGC	1 cut(s)	343
Hin1I	GRCGYC	1 cut(s)	291
Hin1II	CATG	5 cut(s)	25, 122, 472, 539, 616
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HindIII	AAGCTT	2 cut(s)	212, 239
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	1 cut(s)	512
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	2 cut(s)	492, 520
Hpy188III	TCNNGA	3 cut(s)	175, 208, 257
Hpy8I	GTNNAC	1 cut(s)	256
Hpy99I	CGWCG	1 cut(s)	293
HpyAV	CCTTC	1 cut(s)	368
HpyCH4III	ACNGT	1 cut(s)	575
HpyCH4IV	ACGT	3 cut(s)	37, 291, 336
HpyCH4V	TGCA	3 cut(s)	472, 535, 609
HpySE526I	ACGT	3 cut(s)	37, 291, 336
Hsp92I	GRCGYC	1 cut(s)	291
Hsp92II	CATG	5 cut(s)	25, 122, 472, 539, 616
HspAI	GCGC	1 cut(s)	341
Kzo9I	GATC	3 cut(s)	27, 139, 171
LmnI	GCTCC	1 cut(s)	445
LpnPI	CCDG	5 cut(s)	54, 322, 357, 471, 498
LweI	GCATC	1 cut(s)	522
MaeI	CTAG	2 cut(s)	50, 149
MaeII	ACGT	3 cut(s)	37, 291, 336
MaeIII	GTNAC	2 cut(s)	175, 311
MalI	GATC	3 cut(s)	29, 141, 173
MboI	GATC	3 cut(s)	27, 139, 171
MboII	GAAGA	8 cut(s)	196, 376, 379, 404, 409, 431, 533, 602
MflI	RGATCY	1 cut(s)	27
MhlI	GDGCHC	2 cut(s)	457, 467
MluCI	AATT	2 cut(s)	231, 414
MmeI	TCCRAC	2 cut(s)	251, 470
MnlI	CCTC	7 cut(s)	42, 56, 253, 436, 517, 564, 567
Mph1103I	ATGCAT	2 cut(s)	474, 537
MroXI	GAANNNNTTC	1 cut(s)	252
MseI	TTAA	2 cut(s)	216, 225
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	1 cut(s)	486
NciI	CCSGG	1 cut(s)	486
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	3 cut(s)	27, 139, 171
NlaIII	CATG	5 cut(s)	25, 122, 472, 539, 616
NlaIV	GGNNCC	2 cut(s)	456, 466
NmuCI	GTSAC	1 cut(s)	175
NsiI	ATGCAT	2 cut(s)	474, 537
NspI	RCATGY	1 cut(s)	122
PaeI	GCATGC	1 cut(s)	122
PdmI	GAANNNNTTC	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	611
PspN4I	GGNNCC	2 cut(s)	456, 466
PspPI	GGNCC	1 cut(s)	436
PsuI	RGATCY	1 cut(s)	27
RsaI	GTAC	1 cut(s)	130
RsaNI	GTAC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	216, 225
SatI	GCNGC	1 cut(s)	610
Sau3AI	GATC	3 cut(s)	27, 139, 171
Sau96I	GGNCC	1 cut(s)	436
ScrFI	CCNGG	1 cut(s)	486
SduI	GDGCHC	2 cut(s)	457, 467
SetI	ASST	7 cut(s)	40, 216, 243, 271, 294, 339, 460
SfaNI	GCATC	1 cut(s)	522
SfcI	CTRYAG	2 cut(s)	66, 571
SphI	GCATGC	1 cut(s)	122
Sse9I	AATT	2 cut(s)	231, 414
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	2 cut(s)	50, 149
StyD4I	CCNGG	1 cut(s)	484
TaaI	ACNGT	1 cut(s)	575
TaiI	ACGT	3 cut(s)	40, 294, 339
TaqI	TCGA	2 cut(s)	108, 189
TasI	AATT	2 cut(s)	231, 414
Tru1I	TTAA	2 cut(s)	216, 225
Tru9I	TTAA	2 cut(s)	216, 225
TscAI	CASTG	1 cut(s)	385
TseFI	GTSAC	1 cut(s)	175
TseI	GCWGC	1 cut(s)	609
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	387
TspRI	CASTG	1 cut(s)	385
XapI	RAATTY	1 cut(s)	231
XceI	RCATGY	1 cut(s)	122
XmnI	GAANNNNTTC	1 cut(s)	252
XspI	CTAG	2 cut(s)	50, 149
ZraI	GACGTC	1 cut(s)	292
Zsp2I	ATGCAT	2 cut(s)	474, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.