Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

16416816 .. 16417794

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGCCTCCTCACGTACGGAGTCTGAAGCCACTGTCAAGCGATCACTCTGAGCAGGAGCCAGATAAACTGTCTGCATATTTAAGGGTCGAGGACAGGAAGATTATGTCAAACAATATGCTTAGTATTGCCAAGAAGCAACTGAAGACCCAGTCTACTAATAATAATTCTCAGTTACTTGTAAAGGAAATGTCAAAGGGAAAAACAATCAGTAAATTTCCAGAACCTTACGGTGGCTTTGGTAGTCAGGTCGTAGGCCAGAATAATAGAAAACTCCGTTATGGTTCTGAGGTAGCTAGTGATGCAGAGGTGTTGCCTTGCAAGACTTACGAACATCATGCTTCATTTTTTTGCCATCAAATAATATTAAATACACAGGTGCATCAGCCATCGAAGAACCAATTAAGTATCGTGAACCGAGATTTGATTAACAAAAGGAAATTCGAGCAGGATGCACATGCTGAACGTATTTTAGGGGGAAAACAAATAAAAATGAGTGAAGGTAACGAGGATGAATATTTCATAGCTGGTCCAAAAGAATTTGGGTTTGGTGAACTCCAGTTTCAAATGAACTCATGCTACCTAAACAAATTGGTTGCAGCACAGCAAGGATCAACTTCTGTAATTGTTCAGTTGGAAGAGAAGTGGTATACCAGTCCGGAGGAGTTCAATGAGAGAGGTTGTACACTTTCATCAAATGTATATTCCCTTGGGGTCCTTTTTGAGGTGAGAATACATTTTCCACTATTTCTACAAGTTCTTTTCTTTTTAACTGTTTATTTTTTTTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006996 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009637 GO:0009639 GO:0009640 GO:0009648 GO:0009657 GO:0009658 GO:0009791 GO:0009987 GO:0010017 GO:0010099 GO:0010100 GO:0010114 GO:0010218 GO:0010228 GO:0016043 GO:0016604 GO:0022414 GO:0023052 GO:0031461 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0048519 GO:0048572 GO:0048573 GO:0048575 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051239 GO:0051241 GO:0051716 GO:0061458 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071840 GO:0080008 GO:0104004 GO:1902494 GO:1990234 GO:2000026 GO:2000028 GO:2000030 GO:2000241

KEGG Pathways

Metabolic & Signaling

ko04712 map04712

Pfam Domains

Protein Families

Pkinase WD40

Protein Analysis

264

Amino Acids

30.09

Weight (kDa)

8.19

Isoelectric Point (pI)

45.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	152, 647
AccIII	TCCGGA	1 cut(s)	655
AclWI	GGATC	1 cut(s)	616
AcsI	RAATTY	3 cut(s)	212, 437, 536
AcuI	CTGAAG	2 cut(s)	44, 161
AfaI	GTAC	2 cut(s)	15, 682
AfiI	CCNNNNNNNGG	2 cut(s)	230, 721
AgsI	TTSAA	2 cut(s)	563, 667
AjuI	GAANNNNNNNTTGG	2 cut(s)	528, 560
AluBI	AGCT	2 cut(s)	293, 524
AluI	AGCT	2 cut(s)	293, 524
AlwI	GGATC	1 cut(s)	616
Aor13HI	TCCGGA	1 cut(s)	655
AoxI	GGCC	1 cut(s)	253
ApeKI	GCWGC	1 cut(s)	596
ApoI	RAATTY	3 cut(s)	212, 437, 536
AspS9I	GGNCC	2 cut(s)	527, 712
AsuHPI	GGTGA	2 cut(s)	560, 736
AvaII	GGWCC	2 cut(s)	527, 712
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	1 cut(s)	608
BccI	CCATC	2 cut(s)	360, 394
BcgI	CGANNNNNNTGC	4 cut(s)	317, 351, 431, 465
BfaI	CTAG	1 cut(s)	294
BisI	GCNGC	1 cut(s)	597
BlsI	GCNGC	1 cut(s)	598
Bme18I	GGWCC	2 cut(s)	527, 712
BmgT120I	GGNCC	2 cut(s)	527, 712
BmiI	GGNNCC	2 cut(s)	57, 713
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	3 cut(s)	289, 388, 439
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	149
BpmI	CTGGAG	1 cut(s)	539
BsaAI	YACGTR	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	706
BsaWI	WCCGGW	1 cut(s)	655
Bsc4I	CCNNNNNNNGG	2 cut(s)	230, 721
Bse1I	ACTGG	3 cut(s)	148, 556, 651
BseAI	TCCGGA	1 cut(s)	655
BseDI	CCNNGG	1 cut(s)	706
BseGI	GGATG	2 cut(s)	454, 514
BseLI	CCNNNNNNNGG	2 cut(s)	230, 721
BseMII	CTCAG	3 cut(s)	39, 182, 276
BseNI	ACTGG	3 cut(s)	148, 556, 651
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	1 cut(s)	608
BshFI	GGCC	1 cut(s)	255
BsiSI	CCGG	1 cut(s)	656
BsiWI	CGTACG	1 cut(s)	13
BslI	CCNNNNNNNGG	2 cut(s)	230, 721
BsnI	GGCC	1 cut(s)	255
Bsp13I	TCCGGA	1 cut(s)	655
Bsp1407I	TGTACA	1 cut(s)	680
Bsp143I	GATC	2 cut(s)	40, 608
BspANI	GGCC	1 cut(s)	255
BspCNI	CTCAG	3 cut(s)	40, 181, 277
BspEI	TCCGGA	1 cut(s)	655
BspLI	GGNNCC	2 cut(s)	57, 713
BspPI	GGATC	1 cut(s)	616
BsrGI	TGTACA	1 cut(s)	680
BsrI	ACTGG	3 cut(s)	148, 556, 651
BssECI	CCNNGG	1 cut(s)	706
BssMI	GATC	2 cut(s)	40, 608
BssNAI	GTATAC	1 cut(s)	648
BssT1I	CCWWGG	1 cut(s)	706
Bst1107I	GTATAC	1 cut(s)	648
Bst4CI	ACNGT	4 cut(s)	33, 69, 230, 772
Bst6I	CTCTTC	1 cut(s)	630
BstAUI	TGTACA	1 cut(s)	680
BstBAI	YACGTR	1 cut(s)	13
BstDEI	CTNAG	4 cut(s)	48, 119, 168, 285
BstENI	CCTNNNNNAGG	1 cut(s)	719
BstF5I	GGATG	2 cut(s)	454, 514
BstKTI	GATC	2 cut(s)	43, 611
BstMBI	GATC	2 cut(s)	40, 608
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNSI	RCATGY	1 cut(s)	458
BstV1I	GCAGC	1 cut(s)	608
BstV2I	GAAGAC	1 cut(s)	149
BstZ17I	GTATAC	1 cut(s)	648
BsuRI	GGCC	1 cut(s)	255
BtsCI	GGATG	2 cut(s)	454, 514
BtsIMutI	CAGTG	1 cut(s)	29
Cfr13I	GGNCC	2 cut(s)	527, 712
Csp6I	GTAC	2 cut(s)	14, 681
CviAII	CATG	3 cut(s)	335, 455, 573
CviJI	RGCY	7 cut(s)	28, 58, 234, 255, 293, 385, 524
CviKI_1	RGCY	7 cut(s)	28, 58, 234, 255, 293, 385, 524
CviQI	GTAC	2 cut(s)	14, 681
DdeI	CTNAG	4 cut(s)	48, 119, 168, 285
DpnI	GATC	2 cut(s)	42, 610
DpnII	GATC	2 cut(s)	40, 608
Eam1104I	CTCTTC	1 cut(s)	630
EarI	CTCTTC	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	706
Eco47I	GGWCC	2 cut(s)	527, 712
Eco57I	CTGAAG	2 cut(s)	44, 161
EcoNI	CCTNNNNNAGG	1 cut(s)	719
EcoO109I	RGGNCCY	1 cut(s)	712
EcoT14I	CCWWGG	1 cut(s)	706
ErhI	CCWWGG	1 cut(s)	706
FaeI	CATG	3 cut(s)	338, 458, 576
FatI	CATG	3 cut(s)	334, 454, 572
FblI	GTMKAC	2 cut(s)	152, 647
Fnu4HI	GCNGC	1 cut(s)	597
FokI	GGATG	2 cut(s)	461, 521
Fsp4HI	GCNGC	1 cut(s)	597
FspBI	CTAG	1 cut(s)	294
GluI	GCNGC	1 cut(s)	597
GsuI	CTGGAG	1 cut(s)	539
HaeIII	GGCC	1 cut(s)	255
HapII	CCGG	1 cut(s)	656
Hin1II	CATG	3 cut(s)	338, 458, 576
HinfI	GANTC	1 cut(s)	19
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	2 cut(s)	560, 736
Hpy166II	GTNNAC	5 cut(s)	153, 412, 551, 648, 683
Hpy188I	TCNGA	3 cut(s)	24, 49, 286
Hpy188III	TCNNGA	3 cut(s)	218, 409, 656
Hpy8I	GTNNAC	5 cut(s)	153, 412, 551, 648, 683
HpyAV	CCTTC	1 cut(s)	491
HpyCH4III	ACNGT	4 cut(s)	33, 69, 230, 772
HpyCH4IV	ACGT	2 cut(s)	12, 463
HpyCH4V	TGCA	6 cut(s)	74, 302, 318, 379, 452, 596
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	4 cut(s)	48, 119, 168, 285
HpySE526I	ACGT	2 cut(s)	12, 463
Hsp92II	CATG	3 cut(s)	338, 458, 576
Kpn2I	TCCGGA	1 cut(s)	655
Kzo9I	GATC	2 cut(s)	40, 608
LmnI	GCTCC	1 cut(s)	55
Lsp1109I	GCAGC	1 cut(s)	608
LweI	GCATC	3 cut(s)	289, 388, 439
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	2 cut(s)	12, 463
MaeIII	GTNAC	2 cut(s)	171, 500
MalI	GATC	2 cut(s)	42, 610
MboI	GATC	2 cut(s)	40, 608
MboII	GAAGA	4 cut(s)	109, 154, 403, 647
MluCI	AATT	7 cut(s)	163, 212, 398, 437, 536, 587, 621
MlyI	GAGTC	1 cut(s)	28
MmeI	TCCRAC	1 cut(s)	612
MnlI	CCTC	9 cut(s)	15, 18, 82, 280, 298, 499, 652, 668, 715
MroI	TCCGGA	1 cut(s)	655
MseI	TTAA	5 cut(s)	80, 365, 401, 426, 767
MspI	CCGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	2 cut(s)	40, 608
NlaIII	CATG	3 cut(s)	338, 458, 576
NlaIV	GGNNCC	2 cut(s)	57, 713
NspI	RCATGY	1 cut(s)	458
Pfl23II	CGTACG	1 cut(s)	13
PflFI	GACNNNGTC	1 cut(s)	148
PkrI	GCNGC	1 cut(s)	598
PleI	GAGTC	1 cut(s)	27
PpsI	GAGTC	1 cut(s)	27
Ppu21I	YACGTR	1 cut(s)	13
PpuMI	RGGWCCY	1 cut(s)	712
Psp5II	RGGWCCY	1 cut(s)	712
PspLI	CGTACG	1 cut(s)	13
PspN4I	GGNNCC	2 cut(s)	57, 713
PspPI	GGNCC	2 cut(s)	527, 712
PspPPI	RGGWCCY	1 cut(s)	712
PsrI	GAACNNNNNNTAC	2 cut(s)	560, 592
PsyI	GACNNNGTC	1 cut(s)	148
RsaI	GTAC	2 cut(s)	15, 682
RsaNI	GTAC	2 cut(s)	14, 681
SaqAI	TTAA	5 cut(s)	80, 365, 401, 426, 767
SatI	GCNGC	1 cut(s)	597
Sau3AI	GATC	2 cut(s)	40, 608
Sau96I	GGNCC	2 cut(s)	527, 712
SchI	GAGTC	1 cut(s)	28
SfaNI	GCATC	3 cut(s)	289, 388, 439
SinI	GGWCC	2 cut(s)	527, 712
Sse9I	AATT	7 cut(s)	163, 212, 398, 437, 536, 587, 621
SspI	AATATT	2 cut(s)	363, 515
SspMI	CTAG	1 cut(s)	294
StyI	CCWWGG	1 cut(s)	706
TaaI	ACNGT	4 cut(s)	33, 69, 230, 772
TaiI	ACGT	2 cut(s)	15, 466
TaqI	TCGA	3 cut(s)	87, 389, 441
TasI	AATT	7 cut(s)	163, 212, 398, 437, 536, 587, 621
TatI	WGTACW	1 cut(s)	680
Tru1I	TTAA	5 cut(s)	80, 365, 401, 426, 767
Tru9I	TTAA	5 cut(s)	80, 365, 401, 426, 767
TscAI	CASTG	1 cut(s)	36
TseI	GCWGC	1 cut(s)	596
TspDTI	ATGAA	5 cut(s)	330, 508, 525, 581, 678
TspGWI	ACGGA	2 cut(s)	31, 263
TspRI	CASTG	1 cut(s)	36
Tth111I	GACNNNGTC	1 cut(s)	148
VpaK11BI	GGWCC	2 cut(s)	527, 712
XagI	CCTNNNNNAGG	1 cut(s)	719
XapI	RAATTY	3 cut(s)	212, 437, 536
XceI	RCATGY	1 cut(s)	458
XmiI	GTMKAC	2 cut(s)	152, 647
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.