pycom07g15220

Protein of unknown function (DUF4079)

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
17399369 .. 17399593
225 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 225 bp
ATGGCAGCCGCACTCAGCCTCCTCAGACTCCCCATTCTTCCCCAAAAGTCCACTCAATGCCTCTCAAAAATCCAACAGAGTTCATCAATCCCAACAAAACCCAGCAATGTCAAGGACTCAACAAAACTCCTCACAACCACCACTGACCGCCTTAAGTCAACTTCTCTCCCACTCACAGCTCTCACATTGCCCTTTTTGTTGGACACCAAGGCAAGTGCAATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

7.91

Weight (kDa)

10.14

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 9, 148
AflII CTTAAG 1 cut(s) 152
AluBI AGCT 1 cut(s) 179
AluI AGCT 1 cut(s) 179
ApeKI GCWGC 1 cut(s) 5
BbvI GCAGC 1 cut(s) 17
BfrI CTTAAG 1 cut(s) 152
BisI GCNGC 2 cut(s) 6, 9
BlsI GCNGC 2 cut(s) 7, 10
BsaJI CCNNGG 1 cut(s) 207
BsaXI ACNNNNNCTCC 1 cut(s) 33
Bse3DI GCAATG 2 cut(s) 112, 185
BseDI CCNNGG 1 cut(s) 207
BseMI GCAATG 2 cut(s) 112, 185
BseMII CTCAG 2 cut(s) 28, 37
BseRI GAGGAG 2 cut(s) 11, 119
BseXI GCAGC 1 cut(s) 17
BseYI CCCAGC 1 cut(s) 101
BspACI CCGC 2 cut(s) 9, 148
BspCNI CTCAG 2 cut(s) 27, 36
BspTI CTTAAG 1 cut(s) 152
BsrDI GCAATG 2 cut(s) 112, 185
BssECI CCNNGG 1 cut(s) 207
BssT1I CCWWGG 1 cut(s) 207
BstAFI CTTAAG 1 cut(s) 152
BstDEI CTNAG 2 cut(s) 14, 23
BstV1I GCAGC 1 cut(s) 17
BtsIMutI CAGTG 1 cut(s) 141
CviJI RGCY 3 cut(s) 8, 18, 179
CviKI_1 RGCY 3 cut(s) 8, 18, 179
DdeI CTNAG 2 cut(s) 14, 23
Eco130I CCWWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 207
ErhI CCWWGG 1 cut(s) 207
Fnu4HI GCNGC 2 cut(s) 6, 9
Fsp4HI GCNGC 2 cut(s) 6, 9
GluI GCNGC 2 cut(s) 6, 9
GsaI CCCAGC 1 cut(s) 105
HincII GTYRAC 1 cut(s) 159
HindII GTYRAC 1 cut(s) 159
HinfI GANTC 2 cut(s) 27, 116
Hpy166II GTNNAC 2 cut(s) 51, 159
Hpy188I TCNGA 1 cut(s) 26
Hpy8I GTNNAC 2 cut(s) 51, 159
HpyCH4V TGCA 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 14, 23
LpnPI CCDG 1 cut(s) 115
Lsp1109I GCAGC 1 cut(s) 17
MboII GAAGA 1 cut(s) 29
MluCI AATT 1 cut(s) 219
MlyI GAGTC 2 cut(s) 21, 110
MmeI TCCRAC 2 cut(s) 97, 180
MnlI CCTC 4 cut(s) 29, 32, 71, 140
MseI TTAA 1 cut(s) 153
MspCI CTTAAG 1 cut(s) 152
PkrI GCNGC 2 cut(s) 7, 10
PleI GAGTC 2 cut(s) 21, 110
PpsI GAGTC 2 cut(s) 21, 110
PspFI CCCAGC 1 cut(s) 101
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 2 cut(s) 6, 9
SchI GAGTC 2 cut(s) 21, 110
SetI ASST 1 cut(s) 181
SgeI CNNG 3 cut(s) 114, 124, 220
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
Sse9I AATT 1 cut(s) 219
SsiI CCGC 2 cut(s) 9, 148
StyI CCWWGG 1 cut(s) 207
TasI AATT 1 cut(s) 219
TauI GCSGC 1 cut(s) 11
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TscAI CASTG 1 cut(s) 148
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 1 cut(s) 72
TspRI CASTG 1 cut(s) 148
Vha464I CTTAAG 1 cut(s) 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.