Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18362668 .. 18362964

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGATACCAAAAAATCAGCAGTTCCTAATGGAATAGGTAACAAAGCAACTTTGGAGGACCTTCTGCTTGGGCCGACTAGCCAAACCACCTCCGCCAACCGGTTACTCTCTGTCGAAATTCAAGCGTTTGAAGCAAGTTCAACTCCACCGGAAATTCCCAAATGCTATGTCTTTGAATCCATTGATCCTAGAGCGCTAGATTCATTTATTCTACATGCTTCCAAAGATCCACTTCTAATCCACCTGCCGAATTATGGAAGAGAGCTTGGAATCGAACCAAAAATCAAAGATGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004843 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006508 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009987 GO:0010033 GO:0016787 GO:0019538 GO:0019783 GO:0023052 GO:0032870 GO:0036459 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070011 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071704 GO:0101005 GO:0140096 GO:1901564 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko04340 ko04341 map04340 map04341

Pfam Domains

Protein Families

MATH

Protein Analysis

99

Amino Acids

10.67

Weight (kDa)

5.25

Isoelectric Point (pI)

34.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	252
Acc36I	ACCTGC	1 cut(s)	252
AciI	CCGC	1 cut(s)	93
AclWI	GGATC	2 cut(s)	179, 221
AcsI	RAATTY	2 cut(s)	117, 153
AfeI	AGCGCT	1 cut(s)	195
AfiI	CCNNNNNNNGG	2 cut(s)	99, 254
AgeI	ACCGGT	1 cut(s)	99
AgsI	TTSAA	4 cut(s)	122, 131, 141, 176
AluBI	AGCT	1 cut(s)	265
AluI	AGCT	1 cut(s)	265
AlwI	GGATC	2 cut(s)	179, 221
Aor51HI	AGCGCT	1 cut(s)	195
AoxI	GGCC	1 cut(s)	71
ApoI	RAATTY	2 cut(s)	117, 153
ArsI	GACNNNNNNTTYG	2 cut(s)	153, 185
AsiGI	ACCGGT	1 cut(s)	99
AspLEI	GCGC	1 cut(s)	196
AspS9I	GGNCC	2 cut(s)	58, 71
AvaII	GGWCC	1 cut(s)	58
BfaI	CTAG	4 cut(s)	78, 189, 197, 295
BfoI	RGCGCY	1 cut(s)	197
BfuAI	ACCTGC	1 cut(s)	252
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	58, 71
BsaWI	WCCGGW	2 cut(s)	99, 148
Bsc4I	CCNNNNNNNGG	2 cut(s)	99, 254
Bse118I	RCCGGY	1 cut(s)	99
BseLI	CCNNNNNNNGG	2 cut(s)	99, 254
BshFI	GGCC	1 cut(s)	73
BshTI	ACCGGT	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	100, 149
BslI	CCNNNNNNNGG	2 cut(s)	99, 254
BsnI	GGCC	1 cut(s)	73
Bsp143I	GATC	2 cut(s)	184, 226
BspACI	CCGC	1 cut(s)	93
BspANI	GGCC	1 cut(s)	73
BspMI	ACCTGC	1 cut(s)	252
BspPI	GGATC	2 cut(s)	179, 221
BsrFI	RCCGGY	1 cut(s)	99
BssAI	RCCGGY	1 cut(s)	99
BssMI	GATC	2 cut(s)	184, 226
Bst6I	CTCTTC	1 cut(s)	253
BstH2I	RGCGCY	1 cut(s)	197
BstHHI	GCGC	1 cut(s)	196
BstKTI	GATC	2 cut(s)	187, 229
BstMBI	GATC	2 cut(s)	184, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstNSI	RCATGY	1 cut(s)	218
BstX2I	RGATCY	1 cut(s)	226
BstYI	RGATCY	1 cut(s)	226
BsuRI	GGCC	1 cut(s)	73
BveI	ACCTGC	1 cut(s)	252
CfoI	GCGC	1 cut(s)	196
Cfr10I	RCCGGY	1 cut(s)	99
Cfr13I	GGNCC	2 cut(s)	58, 71
CspAI	ACCGGT	1 cut(s)	99
CviAII	CATG	1 cut(s)	215
CviJI	RGCY	3 cut(s)	73, 81, 265
CviKI_1	RGCY	3 cut(s)	73, 81, 265
DpnI	GATC	2 cut(s)	186, 228
DpnII	GATC	2 cut(s)	184, 226
Eam1104I	CTCTTC	1 cut(s)	253
EarI	CTCTTC	1 cut(s)	253
EciI	GGCGGA	1 cut(s)	82
Eco47I	GGWCC	1 cut(s)	58
Eco47III	AGCGCT	1 cut(s)	195
EcoO109I	RGGNCCY	1 cut(s)	58
FaeI	CATG	1 cut(s)	218
FaiI	YATR	3 cut(s)	168, 216, 255
FalI	AAGNNNNNCTT	2 cut(s)	216, 248
FatI	CATG	1 cut(s)	214
FspBI	CTAG	4 cut(s)	78, 189, 197, 295
GlaI	GCGC	1 cut(s)	195
HaeII	RGCGCY	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	2 cut(s)	100, 149
HhaI	GCGC	1 cut(s)	196
Hin1II	CATG	1 cut(s)	218
Hin6I	GCGC	1 cut(s)	194
HinP1I	GCGC	1 cut(s)	194
HinfI	GANTC	3 cut(s)	176, 200, 270
HpaII	CCGG	2 cut(s)	100, 149
HpyAV	CCTTC	1 cut(s)	71
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
Hsp92II	CATG	1 cut(s)	218
HspAI	GCGC	1 cut(s)	194
Kzo9I	GATC	2 cut(s)	184, 226
LpnPI	CCDG	3 cut(s)	113, 162, 257
MaeI	CTAG	4 cut(s)	78, 189, 197, 295
MaeIII	GTNAC	2 cut(s)	38, 102
MalI	GATC	2 cut(s)	186, 228
MboI	GATC	2 cut(s)	184, 226
MboII	GAAGA	1 cut(s)	270
MflI	RGATCY	1 cut(s)	226
MluCI	AATT	3 cut(s)	117, 153, 250
MnlI	CCTC	2 cut(s)	49, 100
MspI	CCGG	2 cut(s)	100, 149
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	2 cut(s)	184, 226
NlaIII	CATG	1 cut(s)	218
NspI	RCATGY	1 cut(s)	218
PaqCI	CACCTGC	1 cut(s)	252
PfeI	GAWTC	3 cut(s)	176, 200, 270
PinAI	ACCGGT	1 cut(s)	99
PpuMI	RGGWCCY	1 cut(s)	58
Psp5II	RGGWCCY	1 cut(s)	58
PspPI	GGNCC	2 cut(s)	58, 71
PspPPI	RGGWCCY	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	184, 226
Sau96I	GGNCC	2 cut(s)	58, 71
SetI	ASST	5 cut(s)	40, 63, 92, 246, 267
SinI	GGWCC	1 cut(s)	58
Sse9I	AATT	3 cut(s)	117, 153, 250
SsiI	CCGC	1 cut(s)	93
SspMI	CTAG	4 cut(s)	78, 189, 197, 295
TaqI	TCGA	2 cut(s)	114, 273
TasI	AATT	3 cut(s)	117, 153, 250
TfiI	GAWTC	3 cut(s)	176, 200, 270
TspDTI	ATGAA	1 cut(s)	192
VpaK11BI	GGWCC	1 cut(s)	58
XapI	RAATTY	2 cut(s)	117, 153
XceI	RCATGY	1 cut(s)	218
XspI	CTAG	4 cut(s)	78, 189, 197, 295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.