Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

N/A

Physical Location & Seq

Genomic Coordinates Reverse (-)

18673083 .. 18675050

Gene Structure 1968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGCTAAAGTTGCCAAGCGTTACATTGATCGATGTATTTCTGCTGAGGTTAATGGAGTTGTTCGATTCGGAGGATCCCCGGGAACGCGAGTATTTGAAAACCCTTTTGCATAGGATTTATGGGAAGTTCATGGTTCATAGACCCTTTATTAGGAAGGCCATGAACAATGTGTTTTATAGGTTTATATTCGAGACACAGAAGCATTGTGGGATTGGTGAGTTGTTGGAGATTCTAGGGAGTATAATAAACGGCTTTGCGTTGCCGATGAAAGAGGAGCATAAGCTGTTCCTAATTAGGGCACTTATTCCCCTGCACAAACCCAAGTCCGTTTCTGCGTATCATTACCAGTTGGCCTATTGTATCATACAGTTTGTAGACAAGGATTCTAAGTTGGCCGAACCGGTGATCAAGGGGTTATTGAAGTATTGGCCGGTCACCAATTGTCAAAAGGAGGTTCTGTTTCTCGCAGAGTTGGAAGACGTTTTGCAGGCTACACAGGCTGATGAGTTTCAAAGATGTATGCTTCCGCTTTTTAGACAGATTGGACGCTGTCTTAATAGCCCTCATTTCCAGGTTGCTGAACGAGCTCTTTACTTGTGGAACAGTGAGCACATTGTAACTTTAATTTCTCAGAACCGTAATGTAATATTACCGTTAGTCTTTGAAGCGTTAGACAAGAATACGCAAGGTCACTGGAACCAAGCAATCCATGGATTGACAGGAAACGTCCGAAGGATGTTCCAGGAAATGGATACAGAATTGTTTGCAGAGTGCCAACAGCAATACTTAGAGAGAGAAAACAGGACTAGAGAATTGGAAGAGCAGCGGGAATTGACTTGGAAGAGAATAGAAGCAGTGGCGGCAAATGCAGGCGGTGAGGATATGGTCTTGGTTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000159 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0008287 GO:0019220 GO:0019222 GO:0031323 GO:0032991 GO:0042325 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051174 GO:0065007 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165

Pfam Domains

Protein Families

B56

Protein Analysis

300

Amino Acids

35.12

Weight (kDa)

6.57

Isoelectric Point (pI)

35.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
B56	PF01603	12 - 286	1.6e-130	Protein phosphatase 2A regulatory B subunit (B56 family)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	748
AccI	GTMKAC	1 cut(s)	375
AccII	CGCG	1 cut(s)	87
AciI	CCGC	4 cut(s)	527, 826, 860, 873
AclWI	GGATC	2 cut(s)	68, 81
AcoI	YGGCCR	2 cut(s)	393, 428
AfiI	CCNNNNNNNGG	3 cut(s)	150, 295, 748
AgeI	ACCGGT	1 cut(s)	400
AgsI	TTSAA	4 cut(s)	97, 421, 512, 665
AjnI	CCWGG	2 cut(s)	570, 741
AluBI	AGCT	2 cut(s)	283, 587
AluI	AGCT	2 cut(s)	283, 587
Alw21I	GWGCWC	2 cut(s)	589, 612
Alw26I	GTCTC	1 cut(s)	185
AlwI	GGATC	2 cut(s)	68, 81
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	4 cut(s)	156, 351, 393, 428
ApeKI	GCWGC	1 cut(s)	823
AsiGI	ACCGGT	1 cut(s)	400
AsuC2I	CCSGG	2 cut(s)	79, 80
AsuHPI	GGTGA	4 cut(s)	227, 415, 427, 887
AvaI	CYCGRG	1 cut(s)	78
BaeGI	GKGCMC	1 cut(s)	301
BamHI	GGATCC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	589
BbsI	GAAGAC	1 cut(s)	483
Bbv12I	GWGCWC	2 cut(s)	589, 612
BbvCI	CCTCAGC	1 cut(s)	44
BbvI	GCAGC	1 cut(s)	835
BceAI	ACGGC	1 cut(s)	265
BciT130I	CCWGG	2 cut(s)	572, 743
BciVI	GTATCC	1 cut(s)	745
BclI	TGATCA	1 cut(s)	405
BcnI	CCSGG	2 cut(s)	79, 80
BcoDI	GTCTC	1 cut(s)	185
BfaI	CTAG	2 cut(s)	233, 807
BfuI	GTATCC	1 cut(s)	745
BisI	GCNGC	2 cut(s)	824, 861
BlsI	GCNGC	2 cut(s)	825, 862
Bme1390I	CCNGG	4 cut(s)	79, 80, 572, 743
BmeT110I	CYCGRG	1 cut(s)	78
BmiI	GGNNCC	2 cut(s)	75, 698
BmrFI	CCNGG	4 cut(s)	79, 80, 572, 743
BpiI	GAAGAC	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	44
BpuMI	CCSGG	2 cut(s)	79, 80
Bsa29I	ATCGAT	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	77, 78, 709
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	3 cut(s)	150, 295, 748
Bse118I	RCCGGY	2 cut(s)	400, 430
Bse1I	ACTGG	2 cut(s)	346, 698
BseBI	CCWGG	2 cut(s)	572, 743
BseCI	ATCGAT	1 cut(s)	30
BseDI	CCNNGG	3 cut(s)	77, 78, 709
BseGI	GGATG	1 cut(s)	741
BseLI	CCNNNNNNNGG	3 cut(s)	150, 295, 748
BseMII	CTCAG	2 cut(s)	35, 644
BseNI	ACTGG	2 cut(s)	346, 698
BseRI	GAGGAG	1 cut(s)	287
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	835
BsgI	GTGCAG	1 cut(s)	296
Bsh1236I	CGCG	1 cut(s)	87
BshFI	GGCC	4 cut(s)	158, 353, 395, 430
BshTI	ACCGGT	1 cut(s)	400
BshVI	ATCGAT	1 cut(s)	30
BsiHKAI	GWGCWC	2 cut(s)	589, 612
BsiHKCI	CYCGRG	1 cut(s)	78
BsiSI	CCGG	3 cut(s)	79, 401, 431
BslI	CCNNNNNNNGG	3 cut(s)	150, 295, 748
BsmAI	GTCTC	1 cut(s)	185
BsnI	GGCC	4 cut(s)	158, 353, 395, 430
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	3 cut(s)	301, 589, 612
Bsp143I	GATC	3 cut(s)	27, 73, 405
Bsp19I	CCATGG	1 cut(s)	709
BspACI	CCGC	4 cut(s)	527, 826, 860, 873
BspANI	GGCC	4 cut(s)	158, 353, 395, 430
BspCNI	CTCAG	2 cut(s)	36, 643
BspDI	ATCGAT	1 cut(s)	30
BspFNI	CGCG	1 cut(s)	87
BspLI	GGNNCC	2 cut(s)	75, 698
BspPI	GGATC	2 cut(s)	68, 81
BspQI	GCTCTTC	1 cut(s)	813
BsrFI	RCCGGY	2 cut(s)	400, 430
BsrI	ACTGG	2 cut(s)	346, 698
BssAI	RCCGGY	2 cut(s)	400, 430
BssECI	CCNNGG	3 cut(s)	77, 78, 709
BssMI	GATC	3 cut(s)	27, 73, 405
BssT1I	CCWWGG	1 cut(s)	709
Bst2UI	CCWGG	2 cut(s)	572, 743
Bst4CI	ACNGT	4 cut(s)	369, 605, 638, 654
Bst6I	CTCTTC	2 cut(s)	813, 836
BstC8I	GCNNGC	2 cut(s)	489, 871
BstDEI	CTNAG	4 cut(s)	44, 387, 630, 787
BstDSI	CCRYGG	1 cut(s)	709
BstEII	GGTNACC	1 cut(s)	433
BstENI	CCTNNNNNAGG	1 cut(s)	148
BstF5I	GGATG	1 cut(s)	741
BstFNI	CGCG	1 cut(s)	87
BstKTI	GATC	3 cut(s)	30, 76, 408
BstMAI	GTCTC	1 cut(s)	185
BstMBI	GATC	3 cut(s)	27, 73, 405
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 497, 584, 860, 866
BstNI	CCWGG	2 cut(s)	572, 743
BstPI	GGTNACC	1 cut(s)	433
BstSCI	CCNGG	4 cut(s)	77, 78, 570, 741
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	1 cut(s)	87
BstV1I	GCAGC	1 cut(s)	835
BstV2I	GAAGAC	1 cut(s)	483
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Bsu15I	ATCGAT	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	745
BsuRI	GGCC	4 cut(s)	158, 353, 395, 430
BsuTUI	ATCGAT	1 cut(s)	30
BtgI	CCRYGG	1 cut(s)	709
BtsCI	GGATG	1 cut(s)	741
BtsI	GCAGTG	1 cut(s)	861
BtsIMutI	CAGTG	3 cut(s)	610, 691, 861
Cac8I	GCNNGC	2 cut(s)	489, 871
Cfr10I	RCCGGY	2 cut(s)	400, 430
Cfr9I	CCCGGG	1 cut(s)	78
ClaI	ATCGAT	1 cut(s)	30
CseI	GACGC	1 cut(s)	555
CspAI	ACCGGT	1 cut(s)	400
CviAII	CATG	3 cut(s)	130, 160, 710
DdeI	CTNAG	4 cut(s)	44, 387, 630, 787
DpnI	GATC	3 cut(s)	29, 75, 407
DpnII	GATC	3 cut(s)	27, 73, 405
EaeI	YGGCCR	2 cut(s)	393, 428
Eam1104I	CTCTTC	2 cut(s)	813, 836
EarI	CTCTTC	2 cut(s)	813, 836
Ecl136II	GAGCTC	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	709
Eco24I	GRGCYC	1 cut(s)	589
Eco53kI	GAGCTC	1 cut(s)	587
Eco88I	CYCGRG	1 cut(s)	78
Eco91I	GGTNACC	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	587
EcoNI	CCTNNNNNAGG	1 cut(s)	148
EcoO65I	GGTNACC	1 cut(s)	433
EcoRII	CCWGG	2 cut(s)	570, 741
EcoT14I	CCWWGG	1 cut(s)	709
EcoT38I	GRGCYC	1 cut(s)	589
ErhI	CCWWGG	1 cut(s)	709
FaeI	CATG	3 cut(s)	133, 163, 713
FatI	CATG	3 cut(s)	129, 159, 709
FauI	CCCGC	1 cut(s)	819
FbaI	TGATCA	1 cut(s)	405
FblI	GTMKAC	1 cut(s)	375
Fnu4HI	GCNGC	2 cut(s)	824, 861
FokI	GGATG	1 cut(s)	748
FriOI	GRGCYC	1 cut(s)	589
Fsp4HI	GCNGC	2 cut(s)	824, 861
FspBI	CTAG	2 cut(s)	233, 807
GluI	GCNGC	2 cut(s)	824, 861
HaeIII	GGCC	4 cut(s)	158, 353, 395, 430
HapII	CCGG	3 cut(s)	79, 401, 431
HgaI	GACGC	1 cut(s)	555
Hin1II	CATG	3 cut(s)	133, 163, 713
HinfI	GANTC	3 cut(s)	65, 229, 383
HpaII	CCGG	3 cut(s)	79, 401, 431
HphI	GGTGA	4 cut(s)	227, 415, 427, 887
Hpy166II	GTNNAC	1 cut(s)	376
Hpy188I	TCNGA	3 cut(s)	70, 633, 731
Hpy188III	TCNNGA	1 cut(s)	190
Hpy8I	GTNNAC	1 cut(s)	376
HpyAV	CCTTC	2 cut(s)	148, 726
HpyCH4III	ACNGT	4 cut(s)	369, 605, 638, 654
HpyCH4IV	ACGT	2 cut(s)	480, 726
HpyCH4V	TGCA	5 cut(s)	109, 313, 487, 767, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 497, 584, 860, 866
HpyF3I	CTNAG	4 cut(s)	44, 387, 630, 787
HpySE526I	ACGT	2 cut(s)	480, 726
Hsp92II	CATG	3 cut(s)	133, 163, 713
Ksp22I	TGATCA	1 cut(s)	405
Kzo9I	GATC	3 cut(s)	27, 73, 405
LguI	GCTCTTC	1 cut(s)	813
LmnI	GCTCC	1 cut(s)	274
Lsp1109I	GCAGC	1 cut(s)	835
MaeI	CTAG	2 cut(s)	233, 807
MaeII	ACGT	2 cut(s)	480, 726
MaeIII	GTNAC	4 cut(s)	19, 433, 616, 689
MalI	GATC	3 cut(s)	29, 75, 407
MboI	GATC	3 cut(s)	27, 73, 405
MboII	GAAGA	3 cut(s)	488, 830, 853
MfeI	CAATTG	1 cut(s)	439
MflI	RGATCY	1 cut(s)	73
MhlI	GDGCHC	3 cut(s)	301, 589, 612
MluCI	AATT	7 cut(s)	291, 439, 624, 758, 812, 830, 895
MmeI	TCCRAC	2 cut(s)	204, 453
MnlI	CCTC	6 cut(s)	39, 64, 265, 445, 573, 871
MseI	TTAA	5 cut(s)	50, 555, 623, 894, 898
MspA1I	CMGCKG	1 cut(s)	826
MspI	CCGG	3 cut(s)	79, 401, 431
MspR9I	CCNGG	4 cut(s)	79, 80, 572, 743
MunI	CAATTG	1 cut(s)	439
MvaI	CCWGG	2 cut(s)	572, 743
MvnI	CGCG	1 cut(s)	87
MwoI	GCNNNNNNNGC	5 cut(s)	10, 497, 584, 860, 866
NciI	CCSGG	2 cut(s)	79, 80
NcoI	CCATGG	1 cut(s)	709
NdeII	GATC	3 cut(s)	27, 73, 405
NlaIII	CATG	3 cut(s)	133, 163, 713
NlaIV	GGNNCC	2 cut(s)	75, 698
NmuCI	GTSAC	2 cut(s)	433, 689
PacI	TTAATTAA	1 cut(s)	898
PciSI	GCTCTTC	1 cut(s)	813
PfeI	GAWTC	3 cut(s)	65, 229, 383
PflFI	GACNNNGTC	1 cut(s)	549
PflMI	CCANNNNNTGG	1 cut(s)	748
PfoI	TCCNGGA	1 cut(s)	741
PinAI	ACCGGT	1 cut(s)	400
PkrI	GCNGC	2 cut(s)	825, 862
Psp124BI	GAGCTC	1 cut(s)	589
Psp6I	CCWGG	2 cut(s)	570, 741
PspEI	GGTNACC	1 cut(s)	433
PspGI	CCWGG	2 cut(s)	570, 741
PspN4I	GGNNCC	2 cut(s)	75, 698
PsuI	RGATCY	1 cut(s)	73
PsyI	GACNNNGTC	1 cut(s)	549
SacI	GAGCTC	1 cut(s)	589
SapI	GCTCTTC	1 cut(s)	813
SaqAI	TTAA	5 cut(s)	50, 555, 623, 894, 898
SatI	GCNGC	2 cut(s)	824, 861
Sau3AI	GATC	3 cut(s)	27, 73, 405
ScrFI	CCNGG	4 cut(s)	79, 80, 572, 743
SduI	GDGCHC	3 cut(s)	301, 589, 612
SetI	ASST	9 cut(s)	50, 182, 285, 456, 483, 576, 589, 691, 729
SmaI	CCCGGG	1 cut(s)	80
Sse9I	AATT	7 cut(s)	291, 439, 624, 758, 812, 830, 895
SsiI	CCGC	4 cut(s)	527, 826, 860, 873
SspI	AATATT	1 cut(s)	648
SspMI	CTAG	2 cut(s)	233, 807
SstI	GAGCTC	1 cut(s)	589
StyD4I	CCNGG	4 cut(s)	77, 78, 570, 741
StyI	CCWWGG	1 cut(s)	709
TaaI	ACNGT	4 cut(s)	369, 605, 638, 654
TaiI	ACGT	2 cut(s)	483, 729
TaqI	TCGA	3 cut(s)	30, 63, 189
TasI	AATT	7 cut(s)	291, 439, 624, 758, 812, 830, 895
TauI	GCSGC	1 cut(s)	863
TfiI	GAWTC	3 cut(s)	65, 229, 383
Tru1I	TTAA	5 cut(s)	50, 555, 623, 894, 898
Tru9I	TTAA	5 cut(s)	50, 555, 623, 894, 898
TscAI	CASTG	3 cut(s)	610, 698, 861
TseFI	GTSAC	2 cut(s)	433, 689
TseI	GCWGC	1 cut(s)	823
Tsp45I	GTSAC	2 cut(s)	433, 689
TspDTI	ATGAA	4 cut(s)	118, 125, 176, 281
TspGWI	ACGGA	1 cut(s)	316
TspMI	CCCGGG	1 cut(s)	78
TspRI	CASTG	3 cut(s)	610, 698, 861
Tth111I	GACNNNGTC	1 cut(s)	549
Van91I	CCANNNNNTGG	1 cut(s)	748
XagI	CCTNNNNNAGG	1 cut(s)	148
XcmI	CCANNNNNNNNNTGG	1 cut(s)	707
XmaI	CCCGGG	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	375
XspI	CTAG	2 cut(s)	233, 807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.