pycom07g16820

Protein ENHANCED DISEASE RESISTANCE 2-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
N/A
Physical Location & Seq
Forward (+)
19302358 .. 19303500
1143 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 567 bp
ATGCAACTGGTTGGTGTAGATTGGCTAAGATCTGACAAGCGAGAAGATCATATTAGCAGCCGTTATGGTAGTATTGTTCAGAAATATGCAGAACGAGGTGGATCAGAGTTTTTCTTTATTGTTAATATGCAAATACCCGGAACAACCATGCATACCTTGGCGTTTTATTACATGATGAAAACTCCTCTGGAGGAAACTCCTTTGCTACATGACTTTGTCAATGGAGATGATTCCTATAGGAACTCGAGATTTAAGCTAATACCATACATTTCTAAGGGATCATGGATAGTCAAGCAGAGTGTAGGGAAGAAAGCCTGCTTGGTAGGGCAACGGCTCGAAATGCATTACTTCCGTGGGATGAACTATCTTGAGCTTGAGATCAATGTCGGGTCTTCAACAGTGGCAAGGGGGGTGGCAAATCTTGTTCTAGGCTACCTCAACAATTTGGTCATGGAAATGGCATTTCTGATACAGGCCAACACTGAAGAAGAACTGCCGGAAGTACTTCTTGGAACATGTAGACTTAACCAATTGGATGCATCGAAATCAGTTCTTGTAAAACCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1336 PH START

Protein Analysis

189

Amino Acids

21.41

Weight (kDa)

6.91

Isoelectric Point (pI)

42.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EDR2_C PF07059 1 - 179 2.8e-64 Protein ENHANCED DISEASE RESISTANCE 2, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes

No orthologs found for this gene in the current database.

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 520
AclWI GGATC 2 cut(s) 109, 286
AcuI CTGAAG 1 cut(s) 504
AfaI GTAC 1 cut(s) 504
AflIII ACRYGT 1 cut(s) 515
AgsI TTSAA 1 cut(s) 396
AjuI GAANNNNNNNTTGG 4 cut(s) 302, 334, 492, 524
AluBI AGCT 2 cut(s) 256, 373
AluI AGCT 2 cut(s) 256, 373
AlwI GGATC 2 cut(s) 109, 286
Ama87I CYCGRG 1 cut(s) 244
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 1 cut(s) 57
Asp700I GAANNNNTTC 1 cut(s) 504
AsuC2I CCSGG 1 cut(s) 138
AvaI CYCGRG 1 cut(s) 244
BbsI GAAGAC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 69
BceAI ACGGC 2 cut(s) 45, 347
BcnI CCSGG 1 cut(s) 138
BfaI CTAG 1 cut(s) 428
BfmI CTRYAG 1 cut(s) 235
BglII AGATCT 1 cut(s) 29
BisI GCNGC 1 cut(s) 58
BlsI GCNGC 1 cut(s) 59
BmcAI AGTACT 1 cut(s) 504
Bme1390I CCNGG 1 cut(s) 138
BmeT110I CYCGRG 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 526, 548
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 209
BpuEI CTTGAG 2 cut(s) 389, 395
BpuMI CCSGG 1 cut(s) 138
BsaJI CCNNGG 2 cut(s) 156, 352
Bse1I ACTGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 156, 352
BseGI GGATG 2 cut(s) 363, 541
BseNI ACTGG 1 cut(s) 12
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 69
BshFI GGCC 1 cut(s) 476
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 2 cut(s) 138, 497
BsnI GGCC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 244
Bsp143I GATC 5 cut(s) 29, 46, 101, 278, 378
BspANI GGCC 1 cut(s) 476
BspPI GGATC 2 cut(s) 109, 286
BsrI ACTGG 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 156, 352
BssMI GATC 5 cut(s) 29, 46, 101, 278, 378
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 400, 564
BstC8I GCNNGC 1 cut(s) 316
BstDEI CTNAG 2 cut(s) 26, 273
BstDSI CCRYGG 1 cut(s) 352
BstF5I GGATG 2 cut(s) 363, 541
BstKTI GATC 5 cut(s) 32, 49, 104, 281, 381
BstMBI GATC 5 cut(s) 29, 46, 101, 278, 378
BstMWI GCNNNNNNNGC 1 cut(s) 340
BstNSI RCATGY 1 cut(s) 519
BstSCI CCNGG 1 cut(s) 136
BstSFI CTRYAG 1 cut(s) 235
BstV1I GCAGC 1 cut(s) 69
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 1 cut(s) 29
BstYI RGATCY 1 cut(s) 29
BsuRI GGCC 1 cut(s) 476
BtgI CCRYGG 1 cut(s) 352
BtsCI GGATG 2 cut(s) 363, 541
BtsIMutI CAGTG 2 cut(s) 405, 480
Cac8I GCNNGC 1 cut(s) 316
Csp6I GTAC 1 cut(s) 503
CspCI CAANNNNNGTGG 2 cut(s) 393, 428
CviAII CATG 6 cut(s) 148, 172, 209, 282, 451, 516
CviJI RGCY 8 cut(s) 25, 60, 256, 314, 334, 373, 432, 476
CviKI_1 RGCY 8 cut(s) 25, 60, 256, 314, 334, 373, 432, 476
CviQI GTAC 1 cut(s) 503
DdeI CTNAG 2 cut(s) 26, 273
DpnI GATC 5 cut(s) 31, 48, 103, 280, 380
DpnII GATC 5 cut(s) 29, 46, 101, 278, 378
Eco130I CCWWGG 1 cut(s) 156
Eco57I CTGAAG 1 cut(s) 504
Eco88I CYCGRG 1 cut(s) 244
EcoT14I CCWWGG 1 cut(s) 156
EcoT22I ATGCAT 3 cut(s) 153, 345, 541
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 6 cut(s) 151, 175, 212, 285, 454, 519
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FatI CATG 6 cut(s) 147, 171, 208, 281, 450, 515
FblI GTMKAC 1 cut(s) 520
Fnu4HI GCNGC 1 cut(s) 58
FokI GGATG 2 cut(s) 370, 548
Fsp4HI GCNGC 1 cut(s) 58
FspBI CTAG 1 cut(s) 428
GluI GCNGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 209
HaeIII GGCC 1 cut(s) 476
HapII CCGG 2 cut(s) 138, 497
Hin1II CATG 6 cut(s) 151, 175, 212, 285, 454, 519
HinfI GANTC 1 cut(s) 230
HpaII CCGG 2 cut(s) 138, 497
Hpy166II GTNNAC 1 cut(s) 521
Hpy188I TCNGA 4 cut(s) 34, 81, 106, 468
Hpy188III TCNNGA 3 cut(s) 188, 246, 368
Hpy8I GTNNAC 1 cut(s) 521
HpyCH4III ACNGT 2 cut(s) 400, 564
HpyCH4V TGCA 6 cut(s) 4, 89, 130, 151, 343, 539
HpyF10VI GCNNNNNNNGC 1 cut(s) 340
HpyF3I CTNAG 2 cut(s) 26, 273
Hsp92II CATG 6 cut(s) 151, 175, 212, 285, 454, 519
Kzo9I GATC 5 cut(s) 29, 46, 101, 278, 378
LpnPI CCDG 5 cut(s) 151, 173, 328, 458, 510
Lsp1109I GCAGC 1 cut(s) 69
LweI GCATC 2 cut(s) 526, 548
MaeI CTAG 1 cut(s) 428
MalI GATC 5 cut(s) 31, 48, 103, 280, 380
MboI GATC 5 cut(s) 29, 46, 101, 278, 378
MboII GAAGA 5 cut(s) 56, 319, 384, 497, 500
MfeI CAATTG 1 cut(s) 530
MflI RGATCY 1 cut(s) 29
MluCI AATT 2 cut(s) 442, 530
MnlI CCTC 4 cut(s) 89, 184, 195, 446
Mph1103I ATGCAT 3 cut(s) 153, 345, 541
MroXI GAANNNNTTC 1 cut(s) 504
MseI TTAA 3 cut(s) 123, 252, 525
MslI CAYNNNNRTG 1 cut(s) 455
MspI CCGG 2 cut(s) 138, 497
MspR9I CCNGG 1 cut(s) 138
MunI CAATTG 1 cut(s) 530
MwoI GCNNNNNNNGC 1 cut(s) 340
NciI CCSGG 1 cut(s) 138
NdeII GATC 5 cut(s) 29, 46, 101, 278, 378
NlaIII CATG 6 cut(s) 151, 175, 212, 285, 454, 519
NsiI ATGCAT 3 cut(s) 153, 345, 541
NspI RCATGY 1 cut(s) 519
PaeR7I CTCGAG 1 cut(s) 244
PciI ACATGT 1 cut(s) 515
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 230
PflFI GACNNNGTC 1 cut(s) 215
PkrI GCNGC 1 cut(s) 59
PscI ACATGT 1 cut(s) 515
PsuI RGATCY 1 cut(s) 29
PsyI GACNNNGTC 1 cut(s) 215
RsaI GTAC 1 cut(s) 504
RsaNI GTAC 1 cut(s) 503
RseI CAYNNNNRTG 1 cut(s) 455
SaqAI TTAA 3 cut(s) 123, 252, 525
SatI GCNGC 1 cut(s) 58
Sau3AI GATC 5 cut(s) 29, 46, 101, 278, 378
ScaI AGTACT 1 cut(s) 504
ScrFI CCNGG 1 cut(s) 138
SetI ASST 5 cut(s) 100, 158, 258, 375, 438
SfaNI GCATC 2 cut(s) 526, 548
SfcI CTRYAG 1 cut(s) 235
Sfr274I CTCGAG 1 cut(s) 244
SlaI CTCGAG 1 cut(s) 244
SmiMI CAYNNNNRTG 1 cut(s) 455
SmlI CTYRAG 3 cut(s) 244, 368, 374
SmoI CTYRAG 3 cut(s) 244, 368, 374
Sse9I AATT 2 cut(s) 442, 530
SspMI CTAG 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 400, 564
TaqI TCGA 3 cut(s) 245, 336, 542
TasI AATT 2 cut(s) 442, 530
TatI WGTACW 1 cut(s) 502
TfiI GAWTC 1 cut(s) 230
Tru1I TTAA 3 cut(s) 123, 252, 525
Tru9I TTAA 3 cut(s) 123, 252, 525
TscAI CASTG 2 cut(s) 405, 487
TseI GCWGC 1 cut(s) 57
TspDTI ATGAA 2 cut(s) 191, 374
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 2 cut(s) 405, 487
Tth111I GACNNNGTC 1 cut(s) 215
XceI RCATGY 1 cut(s) 519
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XhoI CTCGAG 1 cut(s) 244
XmiI GTMKAC 1 cut(s) 520
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 1 cut(s) 428
ZrmI AGTACT 1 cut(s) 504
Zsp2I ATGCAT 3 cut(s) 153, 345, 541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.